View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4017-Insertion-6 (Length: 729)

Name: NF4017-Insertion-6
Description: NF4017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4017-Insertion-6
NF4017-Insertion-6
[»] chr1 (3 HSPs)
chr1 (143-429)||(8179556-8179844)
chr1 (505-729)||(8179919-8180141)
chr1 (8-145)||(8179366-8179503)
[»] chr3 (2 HSPs)
chr3 (299-403)||(32201048-32201152)
chr3 (289-403)||(43481597-43481711)
[»] chr7 (4 HSPs)
chr7 (343-421)||(7631295-7631373)
chr7 (333-421)||(23578083-23578171)
chr7 (356-421)||(23584640-23584705)
chr7 (288-421)||(35589747-35589880)
[»] chr8 (3 HSPs)
chr8 (288-403)||(5981476-5981591)
chr8 (288-421)||(2954542-2954675)
chr8 (336-377)||(2954307-2954348)
[»] chr2 (4 HSPs)
chr2 (336-421)||(19548135-19548220)
chr2 (335-420)||(35027895-35027980)
chr2 (271-369)||(10066574-10066672)
chr2 (289-379)||(40053195-40053285)
[»] chr6 (1 HSPs)
chr6 (290-373)||(963844-963927)


Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 143 - 429
Target Start/End: Original strand, 8179556 - 8179844
Alignment:
Q  143 gcatgaataaaacaaatccgtgtggagcactagnnnnnnn-catcaatttcattattcttatttgtttgagagtaaagttaccaaccattcaattgggga 241  Q
    |||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  8179556 gcatgaataaaacaaatccgtgtggagcactagaaaaaaaacatcaatttcattattcttatttgtttgagagtaaagttaccaaccattctgttgggga 8179655  T
Q  242 gttcgaggagcaccaga-gcgacaataagttaaatgtccacgatctttaagagattttgacaccacatttccatctaaaatcttatggcgtcaagtatat 340  Q
    |||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  8179656 gttcgaggagcaccggaagcgacaataagctaaatgtccacgatctttaagagattttgacaccatatttccatctaaaatcttatggcgtcaagtatat 8179755  T
Q  341 gagtctcctatcttatatatcaaacattttctccattttaaatcgatgtgtgacttaatcactaacgcttaaaacccaacacattcatt 429  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  8179756 gagtctcctatcttatatatcaaacattttctccattttaaatcgatgtgtgacttaatcactaacactcaaaacccaacacattcatt 8179844  T

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Target: chr1; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 505 - 729
Target Start/End: Original strand, 8179919 - 8180141
Alignment:
Q  505 accaacttttgaatttaatggtaatgaatcactacacgcacttaccaacttatatcactatgtgcaataaatcaagttgaattatgaaggtgattgaagt 604  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  8179919 accaacttttgaatttaatggtaatgaatcactacacgcacttaccaacttatatcact--gtgcaataaatcaagttgaattatgaaggtgattgaagt 8180016  T
Q  605 atgagttcacaaagtggtcgttggattttaataactaaacgtaattaatcacttctactaatacttacgcattaacaatttactaccatactaatattct 704  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8180017 atgagttcacaaagtggtcgttggattttaataactaaacgtaattaatcacttctactaatacttacgcattaacaatttactaccatactaatattct 8180116  T
Q  705 tccaaaattgtacttctgaaaccca 729  Q
    |||||||||||||||||||||||||    
T  8180117 tccaaaattgtacttctgaaaccca 8180141  T

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Target: chr1; HSP #3
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 8 - 145
Target Start/End: Original strand, 8179366 - 8179503
Alignment:
Q  8 gtaagaaacaatgatacaacaagtaattttggcacaacatcaatgttccttgatttaaaacactacatcgaagtgtcaagtaagtattaatatatataga 107  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  8179366 gtaagaaacaatgatacaacaagtaattttggcactacatcaatgttccttgatttaaaacactacatcaaagtgtcaagtaagtattaatatatataga 8179465  T
Q  108 cttagatttaagcatgagattttccacttcttcacgca 145  Q
    ||||||||||||||||||||||||||||||||||||||    
T  8179466 cttagatttaagcatgagattttccacttcttcacgca 8179503  T

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Target: chr3 (Bit Score: 45; Significance: 3e-16; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 299 - 403
Target Start/End: Complemental strand, 32201152 - 32201048
Alignment:
Q  299 gacaccacatttccatctaaaatcttatggcgtcaagtatatgagtctcctatcttatatatcaaacattttctccattttaaatcgatgtgtgacttaa 398  Q
    |||||||||| |||| | ||||||||| ||| ||||||||||  ||||||| |||| |||||||||||||| || |||||| | |||||||| ||| |||    
T  32201152 gacaccacatctccacccaaaatcttaaggcatcaagtatatatgtctcctctcttgtatatcaaacatttccttcatttttagtcgatgtgagacataa 32201053  T
Q  399 tcact 403  Q
    |||||    
T  32201052 tcact 32201048  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 289 - 403
Target Start/End: Complemental strand, 43481711 - 43481597
Alignment:
Q  289 aagagattttgacaccacatttccatctaaaatcttatggcgtcaagtatatgagtctcctatcttatatatcaaacattttctccattttaaatcgatg 388  Q
    |||||| || ||| |||||| |||| |||||||||||  || ||| ||||||| ||| ||| ||||||||||| ||||||| |||||||   | ||||||    
T  43481711 aagagacttagacgccacatctccacctaaaatcttaatgcatcaggtatatgggtcccctctcttatatatccaacatttcctccattcctagtcgatg 43481612  T
Q  389 tgtgacttaatcact 403  Q
    || ||| ||||||||    
T  43481611 tgagacataatcact 43481597  T

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Target: chr7 (Bit Score: 39; Significance: 0.000000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 343 - 421
Target Start/End: Original strand, 7631295 - 7631373
Alignment:
Q  343 gtctcctatcttatatatcaaacattttctccattttaaatcgatgtgtgacttaatcactaacgcttaaaacccaaca 421  Q
    ||||||| ||||||||||| ||||||||||||||||| | |||||||| |||||||  ||| || ||| ||||||||||    
T  7631295 gtctcctctcttatatatccaacattttctccattttcagtcgatgtgggacttaactactcacacttgaaacccaaca 7631373  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 333 - 421
Target Start/End: Original strand, 23578083 - 23578171
Alignment:
Q  333 aagtatatgagtctcctatcttatatatcaaacattttctccattttaaatcgatgtgtgacttaatcactaacgcttaaaacccaaca 421  Q
    ||||||||| ||| ||| ||||||||||| ||| ||||||||||||  | |||||||| |||||||||||| || | | ||||||||||    
T  23578083 aagtatatgtgtcacctctcttatatatccaacgttttctccatttctactcgatgtgggacttaatcactcacacatgaaacccaaca 23578171  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 356 - 421
Target Start/End: Original strand, 23584640 - 23584705
Alignment:
Q  356 tatatcaaacattttctccattttaaatcgatgtgtgacttaatcactaacgcttaaaacccaaca 421  Q
    ||||||||||||||||| ||||| |||| |||||| |||||||||||| ||  || ||||||||||    
T  23584640 tatatcaaacattttcttcatttcaaattgatgtgagacttaatcactcacatttgaaacccaaca 23584705  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 288 - 421
Target Start/End: Original strand, 35589747 - 35589880
Alignment:
Q  288 taagagattttgacaccacatttccatctaaaatcttatggcgtcaagtatatgagtctcctatcttatatatcaaacattttctccattttaaatcgat 387  Q
    ||||||| || |||||||||| || ||||||||||||| ||| ||| | |||||  |||||| | ||||||||| ||||||||  | |||   ||| |||    
T  35589747 taagagacttagacaccacatctcgatctaaaatcttaaggcatcacgcatatgtatctcctcttttatatatccaacatttttgcaattcctaattgat 35589846  T
Q  388 gtgtgacttaatcactaacgcttaaaacccaaca 421  Q
    ||| ||| |||||||| || ||| ||||||||||    
T  35589847 gtgagacataatcactcacacttgaaacccaaca 35589880  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000007; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 288 - 403
Target Start/End: Original strand, 5981476 - 5981591
Alignment:
Q  288 taagagattttgacaccacatttccatctaaaatcttatggcgtcaagtatatgagtctcctatcttatatatcaaacattttctccattttaaatcgat 387  Q
    ||||||| || ||||||||||||||| | |||| |||| ||| ||| ||| ||| ||| ||| ||||||||||| ||| |||||||||||   | |||||    
T  5981476 taagagacttagacaccacatttccacccaaaaccttaaggcatcaggtacatgggtcccctctcttatatatccaacgttttctccattcctagtcgat 5981575  T
Q  388 gtgtgacttaatcact 403  Q
    ||| ||| ||||||||    
T  5981576 gtgggacataatcact 5981591  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 288 - 421
Target Start/End: Original strand, 2954542 - 2954675
Alignment:
Q  288 taagagattttgacaccacatttccatctaaaatcttatggcgtcaagtatatgagtctcctatcttatatatcaaacattttctccattttaaatcgat 387  Q
    ||||||| || ||| |||||| |||| | |||| |||| ||| ||| | ||||| |||| || ||||||||||| |||||||||||||||   | || ||    
T  2954542 taagagacttagacgccacatctccaccgaaaaccttaaggcatcaggcatatgggtcttctctcttatatatccaacattttctccattcctagtctat 2954641  T
Q  388 gtgtgacttaatcactaacgcttaaaacccaaca 421  Q
    ||| ||| |||||||| || ||| ||||||||||    
T  2954642 gtgggacataatcactcacacttgaaacccaaca 2954675  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 336 - 377
Target Start/End: Original strand, 2954307 - 2954348
Alignment:
Q  336 tatatgagtctcctatcttatatatcaaacattttctccatt 377  Q
    |||||| ||||||| ||||||||||| |||||||||||||||    
T  2954307 tatatgggtctcctctcttatatatccaacattttctccatt 2954348  T

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Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 336 - 421
Target Start/End: Complemental strand, 19548220 - 19548135
Alignment:
Q  336 tatatgagtctcctatcttatatatcaaacattttctccattttaaatcgatgtgtgacttaatcactaacgcttaaaacccaaca 421  Q
    |||||| ||||||| ||||||||||| ||||||| ||| ||||  | |||||||| ||| ||| |||| |||||| ||||||||||    
T  19548220 tatatgggtctcctctcttatatatccaacatttcctctatttctagtcgatgtgggacataaccactcacgcttgaaacccaaca 19548135  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 335 - 420
Target Start/End: Complemental strand, 35027980 - 35027895
Alignment:
Q  335 gtatatgagtctcctatcttatatatcaaacattttctccattttaaatcgatgtgtgacttaatcactaacgcttaaaacccaac 420  Q
    |||||| |||||||| ||||||||||| ||||||| ||  ||| | ||||||||||  || ||||||||||| ||||||| |||||    
T  35027980 gtatataagtctcctctcttatatatccaacatttcctttattcttaatcgatgtggaacataatcactaacacttaaaatccaac 35027895  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 271 - 369
Target Start/End: Complemental strand, 10066672 - 10066574
Alignment:
Q  271 taaatgtccacgatctttaagagattttgacaccacatttccatctaaaatcttatggcgtcaagtatatgagtctcctatcttatatatcaaacattt 369  Q
    |||||||||| || |  ||||||||||  | ||||||| |||| | ||||||||| ||| | | |||||||  |||||||||||||||||| |||||||    
T  10066672 taaatgtccaggaccactaagagatttatataccacatctccacccaaaatcttaaggcattaggtatatggatctcctatcttatatatccaacattt 10066574  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 289 - 379
Target Start/End: Complemental strand, 40053285 - 40053195
Alignment:
Q  289 aagagattttgacaccacatttccatctaaaatcttatggcgtcaagtatatgagtctcctatcttatatatcaaacattttctccatttt 379  Q
    |||||| || ||| |||||| |||| |||||| |||| | | ||| ||||||| ||| ||| ||||||| ||| |||||||||||||||||    
T  40053285 aagagacttagacgccacatctccacctaaaaccttaagacatcatgtatatgggtcccctctcttataaatctaacattttctccatttt 40053195  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 290 - 373
Target Start/End: Original strand, 963844 - 963927
Alignment:
Q  290 agagattttgacaccacatttccatctaaaatcttatggcgtcaagtatatgagtctcctatcttatatatcaaacattttctc 373  Q
    |||||||| ||||||||||||||| | ||||||||  | | ||| || ||||| ||| |||||||||||||  |||||||||||    
T  963844 agagatttagacaccacatttccacccaaaatcttgagacatcatgtttatgaatcttctatcttatatattcaacattttctc 963927  T

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