View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4017-Insertion-7 (Length: 583)
Name: NF4017-Insertion-7
Description: NF4017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4017-Insertion-7 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 451; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 12 - 583
Target Start/End: Complemental strand, 36167980 - 36167387
Alignment:
| Q |
12 |
gaagaaggttggttgaatgtggacatcgttattctccaaagaatttacatgtaagaacttcaacgttcaagttagtgagagtttacgagagtcggatatc |
111 |
Q |
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| T |
36167980 |
gaagaaggttggttgaatgcggacatcgttattctccagagaatttacatgtaagaacttcaacgttcaaattagtgagagtttacgagagtcggatatc |
36167881 |
T |
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| Q |
112 |
taaccaaacttaagaat----------------------acttttatataaatgacgcgtaaataatgttggattttaagagatcattcagggcagggcc |
189 |
Q |
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| T |
36167880 |
taaccaaacttaagaatgtacctttaccaagggttaaaaacttttatataaatgacgcataaataatgttggattttaagaggtcattcagggcaaggcc |
36167781 |
T |
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| Q |
190 |
gacccaataacttttaaaagtaaccgaactctaaaccaattttgaatatatggggtttttcttattcgactataagacatttttgcatgtaaaactaatg |
289 |
Q |
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| T |
36167780 |
gacccaataacttttaaaagtaaccgaactctaaaacaattttgaatatatggggtttttcttattcgactataagacatttttgcatgtaaaactaatg |
36167681 |
T |
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| Q |
290 |
aaaaatattttatcattttcgttttaggccttacccttgagccaaccctgatttgggggctccaacgtttaagtttgtgagaattttatgagatctagag |
389 |
Q |
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|||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||||||||| ||||||| ||||||||||||||||| |||||| |
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| T |
36167680 |
aaaaatattttatcattttcgttttaggccttgcccttaagccaaccctaatttgggggctccaacgcttaagttagtgagaattttatgagacctagag |
36167581 |
T |
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| Q |
390 |
agcatggtgttgattcacatatcatcgtctaattatcattatagggtcattaagtaatggatcatgagggatgattcatggtgttgtcttgttggactgt |
489 |
Q |
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| T |
36167580 |
agcatggtgttaattcacatatcatcgtctaattatcattatagggtcattaattaatggatcatgagggatgattcatggtgttgtattgttggactgt |
36167481 |
T |
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| Q |
490 |
ggattcttcacgaattagatcataggtagtccaaaataaaggataacctttgtatttttcccaagaactcgtgtttttacagcatacattcata |
583 |
Q |
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| T |
36167480 |
ggatccttcacgaattagatcttaggtagtccaaaataaaggataacctttgtatttttcccaagaactcgtgtttttacagcatacattcata |
36167387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 188 - 307
Target Start/End: Original strand, 38703470 - 38703590
Alignment:
| Q |
188 |
ccgacccaataacttttaaaagtaaccgaactctaaaccaattttgaatatatggggtttttcttattcgactataagacatttttgcatgtaa-aacta |
286 |
Q |
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| T |
38703470 |
ccgacctaataatttttaaaagtaagtgaaatttaaaacaattttgaatatatgaggctatttttgttcgactataaggccattttgcttgtaatattta |
38703569 |
T |
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| Q |
287 |
atgaaaaatattttatcattt |
307 |
Q |
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| T |
38703570 |
atgaaaaataatttattattt |
38703590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 183 - 283
Target Start/End: Original strand, 7988883 - 7988984
Alignment:
| Q |
183 |
cagggccgacccaataacttttaaaagtaaccgaactctaaacca-attttgaatatatgggg-tttttcttattcgactataagacatttttgcatgta |
280 |
Q |
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|||| |||||||||||| |||||||||||| |||| ||||| || |||||||||||||||| ||||| || ||||||||| || | ||||||| |||| |
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| T |
7988883 |
caggaccgacccaataatttttaaaagtaa-cgaagcctaaagcagtttttgaatatatggggtttttttttgttcgactatgaggcctttttgcttgta |
7988981 |
T |
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| Q |
281 |
aaa |
283 |
Q |
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||| |
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| T |
7988982 |
aaa |
7988984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 220 - 307
Target Start/End: Complemental strand, 7584680 - 7584592
Alignment:
| Q |
220 |
ctaaaccaattttgaatatatggggtttttcttattcgactataagacatttttgcatgtaaaa-ctaatgaaaaatattttatcattt |
307 |
Q |
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||||| || ||||||||||||||||| | || ||||||| |||| ||||||||| ||||||| | |||||||||||||||| |||| |
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| T |
7584680 |
ctaaagcagttttgaatatatggggtcatgtttgttcgactctaaggcatttttgcttgtaaaatttgatgaaaaatattttattattt |
7584592 |
T |
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