View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4017-Insertion-8 (Length: 559)

Name: NF4017-Insertion-8
Description: NF4017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4017-Insertion-8
NF4017-Insertion-8
[»] chr4 (3 HSPs)
chr4 (8-556)||(37409934-37410484)
chr4 (8-132)||(2936930-2937053)
chr4 (410-463)||(51046399-51046452)
[»] chr5 (7 HSPs)
chr5 (418-486)||(10842625-10842693)
chr5 (411-499)||(6522148-6522235)
chr5 (420-497)||(38779441-38779518)
chr5 (421-461)||(38752631-38752671)
chr5 (421-466)||(38752571-38752616)
chr5 (436-500)||(38048862-38048926)
chr5 (420-464)||(38726818-38726862)
[»] chr1 (3 HSPs)
chr1 (421-499)||(34372457-34372535)
chr1 (421-462)||(37855003-37855044)
chr1 (405-462)||(28027049-28027106)
[»] chr8 (2 HSPs)
chr8 (411-499)||(11319333-11319420)
chr8 (409-501)||(43304345-43304437)
[»] chr6 (3 HSPs)
chr6 (421-473)||(4999903-4999955)
chr6 (416-470)||(33832808-33832862)
chr6 (512-554)||(1664210-1664252)
[»] chr7 (1 HSPs)
chr7 (412-483)||(49058861-49058931)
[»] chr2 (1 HSPs)
chr2 (513-541)||(37278080-37278108)


Alignment Details
Target: chr4 (Bit Score: 512; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 8 - 556
Target Start/End: Complemental strand, 37410484 - 37409934
Alignment:
Q  8 taatggaacaccaatgagtcccctgatttgctaccctccatcaaccaccttaaagccatttgaatattatatttcgtaggtatttttagtggatttcttt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37410484 taatggaacaccaatgagtcccctgatttgctaccctccatcaaccaccttaaagccatttgaatattatatttcgtaggtatttttagtggatttcttt 37410385  T
Q  108 cttccctatcatctgcaggtaggttttcaatattcatataaagactgaagtgatcttacattgcctaatagatgatactcatgctagtatcatttcaaaa 207  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37410384 cttccctatcatctgcaggtaggttttcaatgttcatataaagactgaagtgatcttacattgcctaatagatgatactcatgctagtatcatttcaaaa 37410285  T
Q  208 ttcaaactttgttctttgtttttgtgatcggattttgattagatgcagttaaaatatcatgtgagttgcctcatcttgatccgatgactaagatcattaa 307  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37410284 ttcaaactttgttctttgtttttgtgatcggatttggattagatgcagttaaaatatcatgtgagttgcctcatcttgatccgatgactaagatcattaa 37410185  T
Q  308 ccacacaatattttggcgacaaacaacctaaataatttattgttgcgtatggctcattgtttactaataaatgaccaggtagctcgagctggcgccccgc 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37410184 ccacacaatattttggcgacaaacaacctaaataatttattgttgcgtatggctcattgtttactaataaatgaccaggtagctcgagctggcgccccgc 37410085  T
Q  408 tatagttcaggagtaatcttgtaaattggaccgtagtatttaaaaacaagttgtaatatgtaaattctaagcttgaatagtataaaggtactgtaccgct 507  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||    
T  37410084 tataggtcaggagtaatcttgtaaattggaccgtagtatttaaaaacaaattgtaatatgtaaactctaagcttgaatagtataaaggtaccgtaccgct 37409985  T
Q  508 ttgcagtcagagac--agacacaattggccgaactctgggatcaaatctgc 556  Q
    ||||||||||||||  || ||||||||||||||||||||||||||||||||    
T  37409984 ttgcagtcagagacataggcacaattggccgaactctgggatcaaatctgc 37409934  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 8 - 132
Target Start/End: Original strand, 2936930 - 2937053
Alignment:
Q  8 taatggaacaccaatgagtcccctgatttgctaccctccatcaaccaccttaaagccatttgaatattatatttcgtaggtatttttagtggatttcttt 107  Q
    |||| ||||||| ||||||||| |||   |||||| || |||| ||||||||||||||||||||| |||||||| || || ||||| ||||||||||| |    
T  2936930 taattgaacacccatgagtcccatgacgggctacc-tcaatcagccaccttaaagccatttgaatgttatattttgttgggattttcagtggatttctct 2937028  T
Q  108 cttccctatcatctgcaggtaggtt 132  Q
    | ||| ||||| |||||||||||||    
T  2937029 cctccttatcagctgcaggtaggtt 2937053  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 410 - 463
Target Start/End: Original strand, 51046399 - 51046452
Alignment:
Q  410 tagttcaggagtaatcttgtaaattggaccgtagtatttaaaaacaagttgtaa 463  Q
    ||||| ||||||||||||||||| ||||||| ||||||| || ||| |||||||    
T  51046399 tagtttaggagtaatcttgtaaaatggaccgcagtatttgaacacatgttgtaa 51046452  T

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Target: chr5 (Bit Score: 49; Significance: 9e-19; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 418 - 486
Target Start/End: Complemental strand, 10842693 - 10842625
Alignment:
Q  418 gagtaatcttgtaaattggaccgtagtatttaaaaacaagttgtaatatgtaaattctaagcttgaata 486  Q
    |||||| ||| ||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||    
T  10842693 gagtaaccttataaattggaccgtagtatttaaacacaaattgtaatatgtaaatcctaagcttgaata 10842625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 411 - 499
Target Start/End: Complemental strand, 6522235 - 6522148
Alignment:
Q  411 agttcaggagtaatcttgtaaattggaccgtagtatttaaaaacaagttgtaatatgtaaattctaagcttgaatagtataaaggtact 499  Q
    |||||||| ||| ||||||||| | |||||||||||||||| |||||||||||| ||||||| ||||| ||||||| || |||||||||    
T  6522235 agttcagg-gtagtcttgtaaactagaccgtagtatttaaacacaagttgtaatttgtaaatcctaagtttgaataatagaaaggtact 6522148  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 420 - 497
Target Start/End: Original strand, 38779441 - 38779518
Alignment:
Q  420 gtaatcttgtaaattggaccgtagtatttaaaaacaagttgtaatatgtaaattctaagcttgaatagtataaaggta 497  Q
    ||||||||||||| ||||| |||||||||||| |||||||||| |||| |||  |||||||||| || || |||||||    
T  38779441 gtaatcttgtaaactggactgtagtatttaaacacaagttgtactatgcaaaccctaagcttgagtaatagaaaggta 38779518  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 421 - 461
Target Start/End: Complemental strand, 38752671 - 38752631
Alignment:
Q  421 taatcttgtaaattggaccgtagtatttaaaaacaagttgt 461  Q
    |||||||||||||||||| |||||||||||| |||||||||    
T  38752671 taatcttgtaaattggactgtagtatttaaacacaagttgt 38752631  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 421 - 466
Target Start/End: Complemental strand, 38752616 - 38752571
Alignment:
Q  421 taatcttgtaaattggaccgtagtatttaaaaacaagttgtaatat 466  Q
    ||||| ||||||||||||||||||||||||| | || |||||||||    
T  38752616 taatcatgtaaattggaccgtagtatttaaataaaatttgtaatat 38752571  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 436 - 500
Target Start/End: Original strand, 38048862 - 38048926
Alignment:
Q  436 gaccgtagtatttaaaaacaagttgtaatatgtaaattctaagcttgaatagtataaaggtactg 500  Q
    |||| ||||||||||| |||||||||||| |||||| ||| | |||||||| || ||| ||||||    
T  38048862 gaccatagtatttaaacacaagttgtaatctgtaaactcttaacttgaataatagaaatgtactg 38048926  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 420 - 464
Target Start/End: Complemental strand, 38726862 - 38726818
Alignment:
Q  420 gtaatcttgtaaattggaccgtagtatttaaaaacaagttgtaat 464  Q
    ||||| |||||| |||||||| |||||||||| ||||||||||||    
T  38726862 gtaattttgtaatttggaccgaagtatttaaacacaagttgtaat 38726818  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 421 - 499
Target Start/End: Complemental strand, 34372535 - 34372457
Alignment:
Q  421 taatcttgtaaattggaccgtagtatttaaaaacaagttgtaatatgtaaattctaagcttgaatagtataaaggtact 499  Q
    |||||||||||| |||| ||||||||||||| |||||||||| | ||||||  ||||||||||||| || || ||||||    
T  34372535 taatcttgtaaactggatcgtagtatttaaatacaagttgtactttgtaaaccctaagcttgaataatagaagggtact 34372457  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 421 - 462
Target Start/End: Original strand, 37855003 - 37855044
Alignment:
Q  421 taatcttgtaaattggaccgtagtatttaaaaacaagttgta 462  Q
    ||||||| ||||||||||||||||||||||||||| ||||||    
T  37855003 taatcttataaattggaccgtagtatttaaaaacatgttgta 37855044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 405 - 462
Target Start/End: Complemental strand, 28027106 - 28027049
Alignment:
Q  405 cgctatagttcaggagtaatcttgtaaattggaccgtagtatttaaaaacaagttgta 462  Q
    |||||| ||||| | |||| |||||||| || ||||||||||||||| ||||||||||    
T  28027106 cgctatggttcaagggtaaccttgtaaactgaaccgtagtatttaaacacaagttgta 28027049  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 411 - 499
Target Start/End: Original strand, 11319333 - 11319420
Alignment:
Q  411 agttcaggagtaatcttgtaaattggaccgtagtatttaaaaacaagttgtaatatgtaaattctaagcttgaatagtataaaggtact 499  Q
    |||||||  |||| ||||||||| | ||||| ||||||||  |||||||||||| |||||| |||||||||||||| || |||||||||    
T  11319333 agttcagcggtaaccttgtaaat-gaaccgtcgtatttaagcacaagttgtaatctgtaaactctaagcttgaataatagaaaggtact 11319420  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 409 - 501
Target Start/End: Complemental strand, 43304437 - 43304345
Alignment:
Q  409 atagttcaggagtaatcttgtaaattggaccgtagtatttaaaaacaagttgtaatatgtaaattctaagcttgaatagtataaaggtactgt 501  Q
    |||||||| | ||||||||||||| ||||   || |||||||| |||||||||| | | ||||  ||||| ||||||| || |||||||||||    
T  43304437 atagttcacgggtaatcttgtaaactggattttactatttaaacacaagttgtactttataaaccctaagtttgaatattagaaaggtactgt 43304345  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 421 - 473
Target Start/End: Complemental strand, 4999955 - 4999903
Alignment:
Q  421 taatcttgtaaattggaccgtagtatttaaaaacaagttgtaatatgtaaatt 473  Q
    ||||||||||||||||||||||||||||||| | ||||||||  |||||||||    
T  4999955 taatcttgtaaattggaccgtagtatttaaatataagttgtaccatgtaaatt 4999903  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 416 - 470
Target Start/End: Complemental strand, 33832862 - 33832808
Alignment:
Q  416 aggagtaatcttgtaaattggaccgtagtatttaaaaacaagttgtaatatgtaa 470  Q
    ||||||||||||||||||| |||||||||||||||| |||  |||||||| ||||    
T  33832862 aggagtaatcttgtaaattagaccgtagtatttaaacacacattgtaatacgtaa 33832808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 512 - 554
Target Start/End: Complemental strand, 1664252 - 1664210
Alignment:
Q  512 agtcagagacagacacaattggccgaactctgggatcaaatct 554  Q
    ||||||||||||||||||||||||||||||   ||||||||||    
T  1664252 agtcagagacagacacaattggccgaactccatgatcaaatct 1664210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 412 - 483
Target Start/End: Complemental strand, 49058931 - 49058861
Alignment:
Q  412 gttcaggagtaatcttgtaaattggaccgtagtatttaaaaacaagttgtaatatgtaaattctaagcttga 483  Q
    |||||||  ||||||||||||||||||||||||| ||||| |||||| ||| |||||| |  ||||||||||    
T  49058931 gttcagggataatcttgtaaattggaccgtagta-ttaaacacaagtcgtactatgtacaccctaagcttga 49058861  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 513 - 541
Target Start/End: Original strand, 37278080 - 37278108
Alignment:
Q  513 gtcagagacagacacaattggccgaactc 541  Q
    |||||||||||||||||||||||||||||    
T  37278080 gtcagagacagacacaattggccgaactc 37278108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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