View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4017-Insertion-9 (Length: 531)

Name: NF4017-Insertion-9
Description: NF4017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4017-Insertion-9
NF4017-Insertion-9
[»] chr1 (3 HSPs)
chr1 (8-305)||(13131331-13131634)
chr1 (463-531)||(13132416-13132487)
chr1 (246-314)||(13136137-13136205)
[»] scaffold0999 (2 HSPs)
scaffold0999 (320-463)||(1116-1259)
scaffold0999 (485-525)||(462-502)
[»] chr8 (7 HSPs)
chr8 (316-463)||(19946601-19946748)
chr8 (316-463)||(27830603-27830755)
chr8 (130-169)||(17981185-17981224)
chr8 (413-463)||(17030804-17030854)
chr8 (413-463)||(17031739-17031789)
chr8 (413-463)||(17561240-17561290)
chr8 (413-463)||(17562175-17562225)
[»] chr5 (1 HSPs)
chr5 (320-463)||(38962131-38962274)
[»] chr2 (1 HSPs)
chr2 (316-463)||(12820496-12820643)
[»] chr4 (1 HSPs)
chr4 (322-463)||(10077658-10077799)
[»] chr3 (2 HSPs)
chr3 (351-463)||(9020852-9020961)
chr3 (413-451)||(7471347-7471385)


Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 8 - 305
Target Start/End: Original strand, 13131331 - 13131634
Alignment:
Q  8 gattcaaagttaatatgcaggtggttctagtctgtgaaaggaccataccatgcattatgagctggtgggaagaaaaagtgatgtgccttcatgacttgat 107  Q
    |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  13131331 gattcaaagttaatatgcaggtggttcttgtctgtgaaaggacgataccatgcattatgagttggtgggaagaaaaagtgatgtgccttcatgacttgat 13131430  T
Q  108 ttcctcatttgaaatttggggcttcttcaacaaagttttctcatcttgttctttcttcttctcgtagactcttcctcaccctcagattttccatgttc-- 205  Q
     ||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||      
T  13131431 ctcctcatttgaaagttgagg-ttcttcaacaaagttttctcatcttgttctttcttcttctcatagactcttcctcaccctcggattttccatgttctt 13131529  T
Q  206 -----tccttgttgtcttcagtgttctcatttttctatgtgcttcttgaaagttcttactgtagtttgtttatttcgtgtaccttcaataagtcagcaga 300  Q
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  13131530 ctaaatccttgttgtcttcagtgttctcatttttctatgtgcttcttgaaagttcttactgtagtttgtttaattcgtgtaccttcaataagtcagcaga 13131629  T
Q  301 ataat 305  Q
    |||||    
T  13131630 ataat 13131634  T

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Target: chr1; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 463 - 531
Target Start/End: Original strand, 13132416 - 13132487
Alignment:
Q  463 tgtggagcctctacgattcgcatggtcctataaatctttctagcttccttgggtag---taattgttttgga 531  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||   |||||||||||||    
T  13132416 tgtggagcctctacgattcgcgtggtcctataaatctttctagcttccttgggtagtagtaattgttttgga 13132487  T

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Target: chr1; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 246 - 314
Target Start/End: Complemental strand, 13136205 - 13136137
Alignment:
Q  246 ttgaaagttcttactgtagtttgtttatttcgtgtaccttcaataagtcagcagaataatttttcacta 314  Q
    ||||||||||| || |||||||||||| |||||||||||||||||| ||||||||||||| ||||||||    
T  13136205 ttgaaagttctaacggtagtttgtttaattcgtgtaccttcaataattcagcagaataatatttcacta 13136137  T

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Target: scaffold0999 (Bit Score: 108; Significance: 5e-54; HSPs: 2)
Name: scaffold0999
Description:

Target: scaffold0999; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 320 - 463
Target Start/End: Complemental strand, 1259 - 1116
Alignment:
Q  320 tggtgatgtcttggtgtatgagtgtactttcatgtcatttttgaaaatttgatgtttatcaatatataattgtgacattcttgggagttagataaacata 419  Q
    ||||||||| ||| ||||||| ||||||||||||||| ||||| |||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||    
T  1259 tggtgatgttttgttgtatgactgtactttcatgtcacttttgcaaatttgatgtttatcaaaatataattgtgtcattcttgtgagttagataaacata 1160  T
Q  420 atgaatattttaaacattgttttggcactaaatatttggaatat 463  Q
    |||||||||||||||| |||||||||||||||||||||||||||    
T  1159 atgaatattttaaacactgttttggcactaaatatttggaatat 1116  T

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Target: scaffold0999; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 485 - 525
Target Start/End: Complemental strand, 502 - 462
Alignment:
Q  485 tggtcctataaatctttctagcttccttgggtagtaattgt 525  Q
    ||||||| |||||||| ||||||||||| ||||||||||||    
T  502 tggtcctgtaaatcttcctagcttccttaggtagtaattgt 462  T

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Target: chr8 (Bit Score: 96; Significance: 8e-47; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 316 - 463
Target Start/End: Original strand, 19946601 - 19946748
Alignment:
Q  316 tatgtggtgatgtcttggtgtatgagtgtactttcatgtcatttttgaaaatttgatgtttatcaatatataattgtgacattcttgggagttagataaa 415  Q
    ||||||||||||| ||| ||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||||  |||||||||||    
T  19946601 tatgtggtgatgttttgttgtatgagtgtactttcatgtcacttttgcaaatttgatgtttatcaaaatataattgtgacattcttgatagttagataaa 19946700  T
Q  416 cataatgaatattttaaacattgttttggcactaaatatttggaatat 463  Q
    |||||||||||| ||||||||| ||||  ||||||| ||||| |||||    
T  19946701 cataatgaatatcttaaacattattttaccactaaacatttgaaatat 19946748  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 316 - 463
Target Start/End: Original strand, 27830603 - 27830755
Alignment:
Q  316 tatgtggtgatgtcttggtgtatgagtgtactttcatgtcatttttgaaaatttgatgtttatcaatatataattgtgacattcttgggagttagata-- 413  Q
    ||||||| ||||| ||| |  ||||||||||||| |||| | ||||  |||| ||||||| ||||| |||| ||| ||||||||||| || |||||||      
T  27830603 tatgtggcgatgttttgttacatgagtgtacttttatgtaactttttcaaatatgatgttcatcaaaatattattatgacattcttgagacttagatatg 27830702  T
Q  414 ---aacataatgaatattttaaacattgttttggcactaaatatttggaatat 463  Q
       |||| ||||||||||||||||||| ||||  ||||||||||||| |||||    
T  27830703 gaaaacacaatgaatattttaaacattattttaacactaaatatttgaaatat 27830755  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 130 - 169
Target Start/End: Original strand, 17981185 - 17981224
Alignment:
Q  130 ttcttcaacaaagttttctcatcttgttctttcttcttct 169  Q
    |||||||||||||||||||| |||||||||||||| ||||    
T  17981185 ttcttcaacaaagttttctcgtcttgttctttctttttct 17981224  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 413 - 463
Target Start/End: Complemental strand, 17030854 - 17030804
Alignment:
Q  413 aaacataatgaatattttaaacattgttttggcactaaatatttggaatat 463  Q
    ||||| ||||||||| ||||||||| ||||||||||||| ||| |||||||    
T  17030854 aaacacaatgaatatgttaaacattattttggcactaaaaattaggaatat 17030804  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 413 - 463
Target Start/End: Original strand, 17031739 - 17031789
Alignment:
Q  413 aaacataatgaatattttaaacattgttttggcactaaatatttggaatat 463  Q
    ||||| ||||||||| ||||||||| ||||||||||||| ||| |||||||    
T  17031739 aaacacaatgaatatgttaaacattattttggcactaaaaattgggaatat 17031789  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 413 - 463
Target Start/End: Complemental strand, 17561290 - 17561240
Alignment:
Q  413 aaacataatgaatattttaaacattgttttggcactaaatatttggaatat 463  Q
    ||||| ||||||||| ||||||||| ||||||||||||| ||| |||||||    
T  17561290 aaacacaatgaatatgttaaacattattttggcactaaaaattaggaatat 17561240  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 413 - 463
Target Start/End: Original strand, 17562175 - 17562225
Alignment:
Q  413 aaacataatgaatattttaaacattgttttggcactaaatatttggaatat 463  Q
    ||||| ||||||||| ||||||||| ||||||||||||| ||| |||||||    
T  17562175 aaacacaatgaatatgttaaacattattttggcactaaaaattgggaatat 17562225  T

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Target: chr5 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 320 - 463
Target Start/End: Complemental strand, 38962274 - 38962131
Alignment:
Q  320 tggtgatgtcttggtgtatgagtgtactttcatgtcatttttgaaaatttgatgtttatcaatatataattgtgacattcttgggagttagataaacata 419  Q
    ||||||||| ||| ||||||||||||||||||||||| ||||| ||||||||| |||| ||| |||||||||| |||||||||  ||||||||||||| |    
T  38962274 tggtgatgttttgttgtatgagtgtactttcatgtcacttttgcaaatttgatatttaccaaaatataattgtaacattcttgaaagttagataaacaaa 38962175  T
Q  420 atgaatattttaaacattgttttggcactaaatatttggaatat 463  Q
    |||||||||||||||||| |||| ||||||||||||||||||||    
T  38962174 atgaatattttaaacattattttagcactaaatatttggaatat 38962131  T

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Target: chr2 (Bit Score: 84; Significance: 1e-39; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 316 - 463
Target Start/End: Complemental strand, 12820643 - 12820496
Alignment:
Q  316 tatgtggtgatgtcttggtgtatgagtgtactttcatgtcatttttgaaaatttgatgtttatcaatatataattgtgacattcttgggagttagataaa 415  Q
    ||||||||||||| ||| ||||||||||||||||||||||| ||||| ||||||||||||| |||| |||||||| ||||||| |||  |||||||||||    
T  12820643 tatgtggtgatgttttgttgtatgagtgtactttcatgtcacttttgcaaatttgatgtttctcaaaatataattatgacatttttgatagttagataaa 12820544  T
Q  416 cataatgaatattttaaacattgttttggcactaaatatttggaatat 463  Q
    |||||||||||| ||||||||| ||||  ||||||| ||||| |||||    
T  12820543 cataatgaatatcttaaacattattttaccactaaacatttgaaatat 12820496  T

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Target: chr4 (Bit Score: 66; Significance: 6e-29; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 322 - 463
Target Start/End: Complemental strand, 10077799 - 10077658
Alignment:
Q  322 gtgatgtcttggtgtatgagtgtactttcatgtcatttttgaaaatttgatgtttatcaatatataattgtgacattcttgggagttagataaacataat 421  Q
    ||||||| ||| || ||||||| |||||||||||| ||||  |||| ||||||||||||| |||||||||||||||||||| |||||  ||||||||| |    
T  10077799 gtgatgttttgttgaatgagtgcactttcatgtcacttttacaaatctgatgtttatcaaaatataattgtgacattcttgagagtttaataaacatatt 10077700  T
Q  422 gaatattttaaacattgttttggcactaaatatttggaatat 463  Q
    ||||||| | |||||| |||| ||| |||||||||| |||||    
T  10077699 gaatattattaacattattttagcattaaatatttgaaatat 10077658  T

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Target: chr3 (Bit Score: 51; Significance: 6e-20; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 351 - 463
Target Start/End: Complemental strand, 9020961 - 9020852
Alignment:
Q  351 atgtcatttttgaaaatttgatgtttatcaatatataattgtgacattcttgggagttagataaacataatgaatattttaaacattgttttggcactaa 450  Q
    |||||||||||| |||||||||||||||||| |||||| | ||||||| | | ||| |||||||||||||| || ||||||||||| ||||| ||   ||    
T  9020961 atgtcatttttgcaaatttgatgtttatcaaaatataagtatgacattatcgagagctagataaacataataaaaattttaaacatcgttttagc---aa 9020865  T
Q  451 atatttggaatat 463  Q
    |||||||||||||    
T  9020864 atatttggaatat 9020852  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 413 - 451
Target Start/End: Complemental strand, 7471385 - 7471347
Alignment:
Q  413 aaacataatgaatattttaaacattgttttggcactaaa 451  Q
    ||||| |||||||||||||||||||||||| ||||||||    
T  7471385 aaacacaatgaatattttaaacattgttttagcactaaa 7471347  T

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