View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4017_high_11 (Length: 510)
Name: NF4017_high_11
Description: NF4017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4017_high_11 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 477; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 10 - 510
Target Start/End: Original strand, 9679284 - 9679784
Alignment:
| Q |
10 |
aagaatatggaaatagcaatgttcatgaaaacctcttctaaacactttcctaaattctatccatcaatctaacaatgcaagatcaattcatcatcctatc |
109 |
Q |
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| T |
9679284 |
aagaaaatggaaatagcaatgttcatgaaaacctcttctaaacactttcctaaattctatccatcaatctaacaatgcaagatcaattcatcatcctatc |
9679383 |
T |
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| Q |
110 |
tttgtttcttgttctttttggtccaatccaagtgatctcacaaaaccaacctttcaatgaagatatgctagggttgattgtgttcaaagcaggtctagaa |
209 |
Q |
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| T |
9679384 |
tttgtttcttgttctttttggtccactccaagtgatctcacaaaaccaacctttcaatgaagatatgctagggttgattgtgttcaaagcaggtctagaa |
9679483 |
T |
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| Q |
210 |
gatccgaaaaacaaactttcttcttggaatgaagatgattatagtccttgcaattgggaaggtgtcaaatgtgatccttcaacaaatagggtatcttctc |
309 |
Q |
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| T |
9679484 |
gatccgaaaaacaaactttcttcttggaatgaagatgattatagtccttgcaattgggaaggtgttaaatgtgatccttcaacaaatagggtatcttctc |
9679583 |
T |
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| Q |
310 |
ttgttcttgatggattctctctttcaggacatatcggtaaaagccttatgaaattgcagttccttcaaattctttcactttctcggaacaacttcacggg |
409 |
Q |
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| T |
9679584 |
ttgttcttgatggattctctctttcaggacatattggtaaaagccttatgagattacagttccttcaaattctttcactttctcggaacaacttcacggg |
9679683 |
T |
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| Q |
410 |
gagaataaaccatgatcttcttattacactttggaatctaaaagttgttgatttgagtgaaaacaatctcgttggaacaattccggatgaactttttaaa |
509 |
Q |
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| T |
9679684 |
gagaataaaccatgatcttcttattacactttggaatctaaaagttgttgatttgagtgaaaacaatctcgttggaacaattccggatgaactttttaaa |
9679783 |
T |
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| Q |
510 |
c |
510 |
Q |
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| T |
9679784 |
c |
9679784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 161 - 406
Target Start/End: Complemental strand, 27380394 - 27380149
Alignment:
| Q |
161 |
tttcaatgaagatatgctagggttgattgtgttcaaagcaggtctagaagatccgaaaaacaaactttcttcttggaatgaagatgattatagtccttgc |
260 |
Q |
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| T |
27380394 |
tttcaatgatgatatattaggcttaattgtgtttaaagctggtttacaagatcctaaacacaaactcatttcatggaatgaagatgattacactccttgt |
27380295 |
T |
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| Q |
261 |
aattgggaaggtgtcaaatgtgatccttcaacaaatagggtatcttctcttgttcttgatggattctctctttcaggacatatcggtaaaagccttatga |
360 |
Q |
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| T |
27380294 |
aattgggaaggtgtgaaatgtgattcttcaaacaatagagtcacttctgttatacttgatggattctctctttcaggtcacattgatagaggcttattga |
27380195 |
T |
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| Q |
361 |
aattgcagttccttcaaattctttcactttctcggaacaacttcac |
406 |
Q |
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| T |
27380194 |
gattgcagtttcttcaaactctatcactttctggtaacaatttcac |
27380149 |
T |
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