View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4017_high_12 (Length: 482)
Name: NF4017_high_12
Description: NF4017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4017_high_12 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 17 - 474
Target Start/End: Original strand, 30464067 - 30464540
Alignment:
| Q |
17 |
aagtagaagagaagaattcaaagaaagattatgaggataaaacaagttgttcgggtcaaggctcggaagagatagcgagtaaaagagatgaatctgtggt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30464067 |
aagtagaagagaagaattcaaagaaagattatgaggataaaacaagttgttcgggtcaaggctcggaagagatagcgagtaaaagagatgaatctgtggt |
30464166 |
T |
|
| Q |
117 |
tgtgaatccattgttaaaag---------------gaaggaaatcatcgagtaaatctaagaatcctcaagggaagagaaaagtcaaggtatacttaaat |
201 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30464167 |
tgtgaatccattgttaaaagatgcaggtggaaaaggaaggaaatcatcgagtaaatctaagtatcctcaagggaagagaaaagtcaaggtatacttaaat |
30464266 |
T |
|
| Q |
202 |
aaggaaactatagagttttattcttgctaagtggttt-atctaaatttggtaattaaattcagtgtaactggagttcatcatgtgtagtactaacttttt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
30464267 |
aaggaaactatagagttttattcttgctaagtggttttatctaaatttggtaattaaattcagtgtagctagagttcatcatgtgtagtactaacttttt |
30464366 |
T |
|
| Q |
301 |
agctaaggttctgtcactgtctttttgttaccactctttacaaagagtctcagtttgtctaaagagctcacgggtaccctaacggtagatacacaataaa |
400 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30464367 |
agctaaggttctctcactgtctttttgttaccactcttgacaaagagtctcagtttgtctaaagagctcacgggtaccctaacggtagatacacaataaa |
30464466 |
T |
|
| Q |
401 |
aaataatagaagattgcaatttttcaaaattttgctggtaattcgtagtaagtgtatgtttggtattctgtgct |
474 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
30464467 |
aaataatagaagattgcaatttttcaaaattttgctggtaattcgtagtaagtgtatgtttggtattatgtgct |
30464540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University