View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4017_high_14 (Length: 476)
Name: NF4017_high_14
Description: NF4017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4017_high_14 |
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Alignment Details
Target: chr6 (Bit Score: 346; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 113 - 462
Target Start/End: Original strand, 257724 - 258073
Alignment:
| Q |
113 |
ttcatgaatgaatttcatcatgaagataagaaaaacatagtactagcacaaaacttatagtactaatagtagtacactcttgaataactaatttctaaac |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
257724 |
ttcatgaatgaatttcatcatgaagataagaaaaacatagtactagcacaaaacttatagtactaatagtagtacactcttgaataactaatttctaaac |
257823 |
T |
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| Q |
213 |
tataagcaactttaaaatttatggacccggtgtattggagagttcttcaatccaactatcaatctcttcatcatcaacaaattcagcaccaaaatttaaa |
312 |
Q |
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| T |
257824 |
tataagcaactttaaaatttatggacccggtgtattggagagttcttcaatccaactatcaatctcttcatcatcaacaaattcagcaccaaaatttaaa |
257923 |
T |
|
| Q |
313 |
tcgggaagatcaattgatccattcttatatcaaagtcacaaaattgaaggtcatcaaggcaatcaagatcatccaagacctgttccaaaccatcaaatgg |
412 |
Q |
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| T |
257924 |
tcgggaagatcaattgatccattcttatatcaaagtcacaaaattgaaggtcatcaaggcaatcaagatcatccaagacctgttccaaaccatcaaatgg |
258023 |
T |
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| Q |
413 |
taatcgatccaattcaaactgaaacaaattcaaacttccaaccacatcca |
462 |
Q |
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| T |
258024 |
taatcaatccaattcaaactgaaacaaattcaaacttccaaccacatcca |
258073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 10 - 74
Target Start/End: Original strand, 257622 - 257686
Alignment:
| Q |
10 |
aagaatatgtcaatcaacttctatatgctaaacaatatcaaaaccatatcttttttattttattt |
74 |
Q |
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| T |
257622 |
aagaaaatgtcaatcaacttcaatatgctaaacaatatcaaaaccatatcttttttattttattt |
257686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 339 - 410
Target Start/End: Original strand, 23782208 - 23782279
Alignment:
| Q |
339 |
atatcaaagtcacaaaattgaaggtcatcaaggcaatcaagatcatccaagacctgttccaaaccatcaaat |
410 |
Q |
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| T |
23782208 |
atatcaaaatcaaatagttgaaggtcatcaaggcaaccaagatcatccaaaccctgccctaaaccatcaaat |
23782279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 339 - 410
Target Start/End: Original strand, 23869161 - 23869232
Alignment:
| Q |
339 |
atatcaaagtcacaaaattgaaggtcatcaaggcaatcaagatcatccaagacctgttccaaaccatcaaat |
410 |
Q |
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| T |
23869161 |
atatcaaaatcaaatagttgaaggtcatcaaggcaaccaagatcatccaaaccctgccctaaaccatcaaat |
23869232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 228 - 300
Target Start/End: Original strand, 23782042 - 23782114
Alignment:
| Q |
228 |
aatttatggacccggtgtattggagagttcttcaatccaactatcaatctcttcatcatcaacaaattcagca |
300 |
Q |
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| T |
23782042 |
aatttatggagacggtgtattatagggttcttcaatccagctagcaatctcatcttcgtcaacagattcagca |
23782114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 228 - 300
Target Start/End: Original strand, 23868995 - 23869067
Alignment:
| Q |
228 |
aatttatggacccggtgtattggagagttcttcaatccaactatcaatctcttcatcatcaacaaattcagca |
300 |
Q |
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|||||||||| ||||||||| || ||||||||||||| ||| ||||||| || || |||||| |||||||| |
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| T |
23868995 |
aatttatggagacggtgtattatagggttcttcaatccagctagcaatctcatcttcgtcaacagattcagca |
23869067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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