View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4017_high_15 (Length: 467)
Name: NF4017_high_15
Description: NF4017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4017_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-156; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 18 - 325
Target Start/End: Original strand, 23643906 - 23644212
Alignment:
| Q |
18 |
tgaacaatttttacgctaccctttagtaaatgttcttaagggacaaactcaacacatcaatatacataagagacatttaataaatattttaaatttgcag |
117 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |||| |||||||||||| |||||||||||||||| |
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| T |
23643906 |
tgaacaatttttacgctacc-tttagtaaatgttcttaagggacaaacacaacacatcaatatacttaagtgacatttaataagtattttaaatttgcag |
23644004 |
T |
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| Q |
118 |
aggtttttaacaactccttaaatgctaaaaatatttgattatttcaagcacaacatgcgcttaacacactataaagtgagcaaactatgttctattagtt |
217 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23644005 |
aggtttttaagaactccttaaatgctaaaaatatttgattatttcaagcacaacatgcgcttaacacactataaagtgagcaaactatgttctattagtt |
23644104 |
T |
|
| Q |
218 |
acatgtaaagacaggaaaaatatggctaaaactcttaagaatatttattccataattatatttctttccatatttcttgttgtaatgaacgttgacggtg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23644105 |
acatgtaaagacaggaaaaatatggctaaaactcttaagaatatttattccataattatatttctttccatatttcttgttgtaatgaacgttgacggtg |
23644204 |
T |
|
| Q |
318 |
gtaagcta |
325 |
Q |
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|||||||| |
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| T |
23644205 |
gtaagcta |
23644212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 26 - 325
Target Start/End: Original strand, 23653701 - 23654001
Alignment:
| Q |
26 |
ttttacgctaccc-tttagtaaatgttcttaagggacaaactcaacacatcaatatacataagagacatttaataaatattttaaatttgcagagg-ttt |
123 |
Q |
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||||||||||||| |||||||||||| || ||| ||||| ||||||||| ||||| || ||||||||| ||| |||| ||| ||| || ||| ||| |
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| T |
23653701 |
ttttacgctacccctttagtaaatgtactaaagcgacaaggacaacacatcgatatattcaaaagacatttagtaattattctaattttacatagggttt |
23653800 |
T |
|
| Q |
124 |
ttaacaactccttaaatgctaaaaatatttgattatttcaagcacaacatgcgcttaacacactataaagtgagcaaactatgttctattagttacatgt |
223 |
Q |
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|||||||||| |||| |||||||||||||| |||| || |||||| ||| | ||||| |||||||||| ||||||||| | || ||| |||| || | |
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| T |
23653801 |
ttaacaactctttaagtgctaaaaatatttcattaatttgagcacaccatccacttaatacactataaaaagagcaaactgtattaaatttgttatatat |
23653900 |
T |
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| Q |
224 |
aaagacaggaaaaatatggctaaaactcttaagaatatttattccataattatatttctttccatatttcttgttgtaatgaacgttgacggtggtaagc |
323 |
Q |
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|||| ||| |||||||||| |||||| | ||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
23653901 |
aaaggcag-aaaaatatggttaaaacattcaagtttatttattctataattatatttctttctccatttcttgttgtaatgaacgttgacggtggtaagc |
23653999 |
T |
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| Q |
324 |
ta |
325 |
Q |
| |
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|| |
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| T |
23654000 |
ta |
23654001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 365 - 455
Target Start/End: Original strand, 23644251 - 23644341
Alignment:
| Q |
365 |
gttcatacacaatattttatctcaatctattaatattattatattctctttatctactttagagcttatcaattgtataacggatgatgat |
455 |
Q |
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|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23644251 |
gttcatacacaatattttatctcattttattaatattattatattctctttatctactttagagcttatcaattgtataacggatgatgat |
23644341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 234 - 295
Target Start/End: Complemental strand, 23618471 - 23618410
Alignment:
| Q |
234 |
aaaatatggctaaaactcttaagaatatttattccataattatatttctttccatatttctt |
295 |
Q |
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||||||||||||||||||||||| | | ||| | || ||||||||||||||| |||||||| |
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| T |
23618471 |
aaaatatggctaaaactcttaagtttgtgtatgctatgattatatttctttccttatttctt |
23618410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 53 - 105
Target Start/End: Complemental strand, 10980848 - 10980796
Alignment:
| Q |
53 |
ttaagggacaaactcaacacatcaatatacataagagacatttaataaatatt |
105 |
Q |
| |
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||||||||||||| | |||||| ||||||| |||||||| |||||||| |||| |
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| T |
10980848 |
ttaagggacaaacacgacacattaatatacttaagagacttttaataattatt |
10980796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 109
Target Start/End: Complemental strand, 4230737 - 4230668
Alignment:
| Q |
40 |
ttagtaaatgttcttaagggacaaactcaacacatcaatatacataagagacatttaataaatattttaa |
109 |
Q |
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||||||| |||| | ||||||||||| |||||||| |||||| ||| ||| |||||| ||||||||||| |
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| T |
4230737 |
ttagtaagtgttataaagggacaaacacaacacattgatatacctaaaagatatttaaaaaatattttaa |
4230668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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