View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4017_high_17 (Length: 416)
Name: NF4017_high_17
Description: NF4017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4017_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 384; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 1 - 400
Target Start/End: Complemental strand, 37410879 - 37410480
Alignment:
| Q |
1 |
tcatcacaagctgaaatacaaattgctacccctccttttgtgccttcataatttcttgaatttgtattatcctcccatgcataatactcttccctgttaa |
100 |
Q |
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| T |
37410879 |
tcatcacaagctgaaatacaaattgctacccctccttttgtgccttcataatttcttgaatttgtattatcctcccatgtataatacccttccctgttaa |
37410780 |
T |
|
| Q |
101 |
aatagattcagctcacaagaaaagagtatcaacacttaatacttcactaaataagcattattcataaacttacctgttcatcttgcacacaaatgataaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37410779 |
aatagattcagctcacaagaaaagagtatcaacacttaatacttcactaaataagcattattcataaacttacctgttcatcttgcacacaaatgataaa |
37410680 |
T |
|
| Q |
201 |
tcaagaacattcccactgtgacatgcatcaataatggcatgaagtttagcaccaaatggtagtggcctaacaattgttgcattaatctcattattcagta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
37410679 |
tcaagaacattcccactgtgacatgcatcaataatggcatgaagtttagcaccaaatggtagtggcctaacaattgttgcattaatctcattattcagca |
37410580 |
T |
|
| Q |
301 |
tcttccccttgtgctcatgatcaacaggacaaattgcattatcatacctatgatcaatctcattcatgttcacttcctgtgtgccatgtcctgagtaatg |
400 |
Q |
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| T |
37410579 |
tcttccccttgtgctcatgatcaacaggacaaattgcattatcatacctatcatcaatctcattcatgttcacttcctgtgtgccatgtcctgagtaatg |
37410480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 2936622 - 2936688
Alignment:
| Q |
1 |
tcatcacaagctgaaatacaaattgctacccctccttttgtgccttcataatttcttgaatttgtat |
67 |
Q |
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|||||||||| ||||||||||||||||||||| |||||||| || || | || |||||||||||| |
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| T |
2936622 |
tcatcacaagatgaaatacaaattgctaccccaacttttgtgtatttatcagttattgaatttgtat |
2936688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 223 - 348
Target Start/End: Original strand, 1716576 - 1716701
Alignment:
| Q |
223 |
atgcatcaataatggcatgaagtttagcaccaaatggtagtggcctaacaattgttgcattaatctcattattcagtatcttccccttgtgctcatgatc |
322 |
Q |
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||||||||| || |||||| ||||| |||||| ||||| |||||||||||||| ||||| || |||| || |||||| |||||| ||||||| ||| |
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| T |
1716576 |
atgcatcaacaagggcatgtagtttggcaccatgaggtagaggcctaacaattgtagcattgatttcatcatcgagtatcatcccctcctgctcataatc |
1716675 |
T |
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| Q |
323 |
aacaggacaaattgcattatcatacc |
348 |
Q |
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||||| || ||||| | |||||||| |
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| T |
1716676 |
gacagggcatattgcttcatcatacc |
1716701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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