View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4017_high_19 (Length: 381)
Name: NF4017_high_19
Description: NF4017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4017_high_19 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 15 - 362
Target Start/End: Complemental strand, 44995100 - 44994753
Alignment:
| Q |
15 |
atcaccaaattcataaaaccctgtaacaacagtacaataagcaacagcatttgaaaaacaacccagcaccggcatattccgaagcagcctcaaagcagca |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44995100 |
atcaccaaattcataaaaccctgtaacaacagtacaataagcaacagcatttgaaaaacaacccagcaccggcatattccgaagcagcctcaaagcagca |
44995001 |
T |
|
| Q |
115 |
taaggcctacccgttctacaaaaactcttaatccttatagtataagtatacacatctgattcaacctttttatctttcatcctcatataaaccttatgag |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44995000 |
taaggcctacccgttctacaaaaactcttaatccttatagtataagtatacacatctgattcaacctttttatctttcatcctcatataaaccttatgag |
44994901 |
T |
|
| Q |
215 |
cttgattaaaataaccaaactcaacaagaatattcataatagcattataagaataaacagatgggtcacagttgaataaatccatgcgttcaaatgtatc |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44994900 |
cttgattaaaataaccaaactcaacaagaatattcataatagcattataagaataaacagatgggtcacagttgaataaatccatgcgttcaaatgtatc |
44994801 |
T |
|
| Q |
315 |
aacagcttcttgaatttttccttttcttccgtagaatctcatggcttc |
362 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44994800 |
aacagcttcttgaatttttccttttcttccgtagaatctcatggcttc |
44994753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University