View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4017_high_20 (Length: 378)
Name: NF4017_high_20
Description: NF4017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4017_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 12 - 232
Target Start/End: Complemental strand, 49484064 - 49483844
Alignment:
| Q |
12 |
ataggagacatgataaaaggaaagacagcaggtgaaattgcccagttatttgacattaaagatgtttgtacacaggaagagtaaaaccagtaaagtcttg |
111 |
Q |
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| T |
49484064 |
ataggagacatgataaaaggaaagacagcaggtgaaattgcccagttatttgacattaaagatgtttgtacacaggaagagcaaaaccagtgaagtcttg |
49483965 |
T |
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| Q |
112 |
aaattttcagctaaaaaatatacctgaagttttattcctgtttcgtttatcatttaatattcaatggctctttgtttgttggagagaatataacatgttg |
211 |
Q |
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| T |
49483964 |
aaattttcagctaaaaaatatacctgaagtttatttcctgtttcgtttatcatttaatcttcaatggctctttgtttgttggagcgaatataacatgttg |
49483865 |
T |
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| Q |
212 |
tctagtatttcagatcattac |
232 |
Q |
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| T |
49483864 |
tctagtatttcagatcattac |
49483844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 326 - 363
Target Start/End: Complemental strand, 49483840 - 49483803
Alignment:
| Q |
326 |
ggcaagaccaaataaaataaaaagcaaaccctcatatt |
363 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
49483840 |
ggcaagaccaaataaaataaaaagcaaaccctcatatt |
49483803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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