View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4017_high_23 (Length: 348)
Name: NF4017_high_23
Description: NF4017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4017_high_23 |
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Alignment Details
Target: chr5 (Bit Score: 300; Significance: 1e-169; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 19 - 338
Target Start/End: Original strand, 40277158 - 40277477
Alignment:
| Q |
19 |
tgttttaagtctagagaggagacttcagatcaacttttagaggcattgaaggatgatgattgttctatgattgggttgtatggtaagcagggatctggta |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
40277158 |
tgttttaagtctagagaggagacttcagatcaacttttagaggcattcaaggatgatgattgttctatgattggcttgtatggtaagcagggatctggta |
40277257 |
T |
|
| Q |
119 |
aaacagcattggtgaaagcaatgggtgagaaagtcaagtatttaaatatttttcatgaaattttatttgtcagtgtgaccaaaatcccaaatatcacagc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
40277258 |
aaacagcattggtgaaagcaatgggtgagaaagtcaagtatttaaatatttttcatgaaattttatttgtcagtgtgaccaaaaacccaaatatcacagc |
40277357 |
T |
|
| Q |
219 |
aatgcaagatgaaattgctgactccttgaatataagatttgatgaagccgaaagagcaagactaatatcttccaccatagaaaatatggatcgtccaatg |
318 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40277358 |
aatgcaagatgaaattgctgactccttgaatattagatttgatgaagccgaaagagcaagactaatatcttccaccatagaaaatatggatcgtccaata |
40277457 |
T |
|
| Q |
319 |
cttgtgatctttgatgatgt |
338 |
Q |
| |
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|||||||||||||||||||| |
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| T |
40277458 |
cttgtgatctttgatgatgt |
40277477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 19 - 338
Target Start/End: Original strand, 40376303 - 40376631
Alignment:
| Q |
19 |
tgttttaagtctagagaggagacttcagatcaacttttagaggcattgaaggatgatgattgttctatgattgggttgtatggtaagcagggatctggta |
118 |
Q |
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||||| ||||| | |||| || |||||||| ||||||| || ||| || | |||||| ||||| ||| || || ||||| |||| || | ||||||| |
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| T |
40376303 |
tgtttcaagtcgacagagaaggcttcagatgaacttttggaagcactgcaagatgataattgtcgtataataggattgtacggtaggcgtgactctggta |
40376402 |
T |
|
| Q |
119 |
aaacagcattggtgaaagcaatgggtgagaaagtcaagtatttaaatatttttcatgaaattttatttgtcagtgtgaccaaaatcccaaatatcacagc |
218 |
Q |
| |
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|||| ||||||||| || ||||||||||||||||| || ||||||||||||| |||| ||||||||||||| ||||||||||| ||||||||||||||| |
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| T |
40376403 |
aaactacattggtgagagtaatgggtgagaaagtcatgtttttaaatatttttgatgagattttatttgtcaatgtgaccaaaaacccaaatatcacagc |
40376502 |
T |
|
| Q |
219 |
aatgcaagatgaaattgctgactccttgaatataagatttga---------tgaagccgaaagagcaagactaatatcttccaccatagaaaatatggat |
309 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| ||||| ||||| ||||||||||||||| |
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| T |
40376503 |
aatgcaagatgaaattgctgactccttgaatataagatttgatagaaacagtgaagctgaaagagcaagaaaaatattatccacaatagaaaatatggat |
40376602 |
T |
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| Q |
310 |
cgtccaatgcttgtgatctttgatgatgt |
338 |
Q |
| |
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| ||| || |||||||||||||||||||| |
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| T |
40376603 |
catcctatacttgtgatctttgatgatgt |
40376631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 41 - 338
Target Start/End: Original strand, 40386570 - 40386876
Alignment:
| Q |
41 |
cttcagatcaacttttagaggcattgaaggatgatgattgttctatgattgggttgtatggtaagcagggatctggtaaaacagcattggtgaaagcaat |
140 |
Q |
| |
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|||||||| ||||||| |||||| || | |||||| |||||| |||||| || ||||| |||| || | ||||||||||| | |||||||||| ||| |
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| T |
40386570 |
cttcagatgaacttttggaggcactgcaagatgataattgttgtatgataggattgtacggtaggcgtgactctggtaaaactacgttggtgaaagtaat |
40386669 |
T |
|
| Q |
141 |
gggtgagaaagtcaagtatttaaatatttttcatgaaattttatttgtcagtgtgaccaaaatcccaaatatcacagcaatgcaagatgaaattgctgac |
240 |
Q |
| |
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|| |||||||| | ||||| ||||||||| |||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
40386670 |
ggaacagaaagtccaatatttgaatatttttgatgagattttatttgtcaatgtgaccaaaaacccaaatatcacagcaatgcaagatgaaattgctgac |
40386769 |
T |
|
| Q |
241 |
tccttgaatataagatttga---------tgaagccgaaagagcaagactaatatcttccaccatagaaaatatggatcgtccaatgcttgtgatctttg |
331 |
Q |
| |
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|||||||||||||||||||| |||||| | |||||||||| ||||| ||||| |||||| |||||||||||||||| ||||| ||||||| |
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| T |
40386770 |
tccttgaatataagatttgatagaaacagtgaagctggaagagcaagaagaatattatccacaatagaagatatggatcgtccaatacttgttatctttg |
40386869 |
T |
|
| Q |
332 |
atgatgt |
338 |
Q |
| |
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||||||| |
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|
| T |
40386870 |
atgatgt |
40386876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 41 - 338
Target Start/End: Original strand, 40333292 - 40333598
Alignment:
| Q |
41 |
cttcagatcaacttttagaggcattgaaggatgatgattgttctatgattgggttgtatggtaagcagggatctggtaaaacagcattggtgaaagcaat |
140 |
Q |
| |
|
|||||||| ||||||| |||||| || | |||||| |||||| |||||| || ||||| |||| || | ||||||||||| | |||||||||| ||| |
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| T |
40333292 |
cttcagatgaacttttggaggcactgcaagatgataattgttgtatgataggattgtacggtaggcgtgactctggtaaaactacgttggtgaaagtaat |
40333391 |
T |
|
| Q |
141 |
gggtgagaaagtcaagtatttaaatatttttcatgaaattttatttgtcagtgtgaccaaaatcccaaatatcacagcaatgcaagatgaaattgctgac |
240 |
Q |
| |
|
|| |||||||| | ||||| ||||||||| |||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
40333392 |
ggaacagaaagtccaatatttgaatatttttgatgagattttatttgtcaatgtgaccaaaaacccaaatatcacagcaatgcaagatgaaattgctgac |
40333491 |
T |
|
| Q |
241 |
tccttgaatataagatttga---------tgaagccgaaagagcaagactaatatcttccaccatagaaaatatggatcgtccaatgcttgtgatctttg |
331 |
Q |
| |
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| ||||||||||||||| || |||| | | |||||||||| ||||| ||||| |||||| |||||||||||||||| ||||||||||||| |
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| T |
40333492 |
ttcttgaatataagattagatagaaacagtgaaactggaagagcaagaaaaatattatccacaatagaagatatggatcgtccaatacttgtgatctttg |
40333591 |
T |
|
| Q |
332 |
atgatgt |
338 |
Q |
| |
|
||||||| |
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|
| T |
40333592 |
atgatgt |
40333598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 19 - 241
Target Start/End: Complemental strand, 40598430 - 40598208
Alignment:
| Q |
19 |
tgttttaagtctagagaggagacttcagatcaacttttagaggcattgaaggatgatgattgttctatgattgggttgtatggtaagcagggatctggta |
118 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||||||||||| || |||||| |||| ||||||||||| |||||||||| |||| ||||||| |
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| T |
40598430 |
tgttttaagtctagagataagacttcagatcaaattttagaggcactgcgagatgataattgctctatgattggattgtatggtagcaagggctctggta |
40598331 |
T |
|
| Q |
119 |
aaacagcattggtgaaagcaatgggtgagaaagtcaagtatttaaatatttttcatgaaattttatttgtcagtgtgaccaaaatcccaaatatcacagc |
218 |
Q |
| |
|
| ||||| |||| |||||||||||||||||||| ||| || |||| ||||||||||| ||||||||| || ||||| ||| || ||||||| | | |
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| T |
40598330 |
agacagcgttggcaaaagcaatgggtgagaaagttaagcatctaaagatttttcatgaggttttatttgccacggtgacgcaaaacctgaatatcagaac |
40598231 |
T |
|
| Q |
219 |
aatgcaagatgaaattgctgact |
241 |
Q |
| |
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|||||||| ||||||||||||| |
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| T |
40598230 |
tatgcaagaagaaattgctgact |
40598208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 41 - 171
Target Start/End: Complemental strand, 40257737 - 40257607
Alignment:
| Q |
41 |
cttcagatcaacttttagaggcattgaaggatgatgattgttctatgattgggttgtatggtaagcagggatctggtaaaacagcattggtgaaagcaat |
140 |
Q |
| |
|
|||| ||||||||||| |||||| || | || | | |||| | ||| ||||| || ||||| ||| |||| |||||||||||| |||||||||||| | |
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|
| T |
40257737 |
cttcggatcaacttttggaggcactgcaagacggtaattgctatataattggattatatgggaagaagggctctggtaaaacaaagttggtgaaagcagt |
40257638 |
T |
|
| Q |
141 |
gggtgagaaagtcaagtatttaaatattttt |
171 |
Q |
| |
|
|||||||||| |||||||||||| |||||| |
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|
| T |
40257637 |
tggtgagaaagccaagtatttaaagattttt |
40257607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 209
Target Start/End: Original strand, 40325801 - 40325898
Alignment:
| Q |
112 |
tctggtaaaacagcattggtgaaagcaatgggtgagaaagtcaagtatttaaatatttttcatgaaattttatttgtcagtgtgaccaaaatcccaaa |
209 |
Q |
| |
|
|||||||||||| |||| ||||||||| ||| |||||||| |||||| | || ||||| ||||| |||||||| ||| |||| || ||| |||||| |
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| T |
40325801 |
tctggtaaaacaacattagtgaaagcagtggctgagaaagccaagtactccaagttttttgatgaagttttatttatcaatgtgtcccaaaacccaaa |
40325898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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