View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4017_high_28 (Length: 328)
Name: NF4017_high_28
Description: NF4017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4017_high_28 |
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Alignment Details
Target: chr2 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 19 - 312
Target Start/End: Original strand, 44265584 - 44265877
Alignment:
| Q |
19 |
gaaccatgtttgctgttttaagaaggcgaaggaggaagttgcatggaatggaatctttgtctggtggaagaacactgactaaggtttcaacaaagaacct |
118 |
Q |
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| T |
44265584 |
gaaccatgtttgctgttttaagaaggcgaaggaggaagttgcatggaatggaatctttgtctggtggaagaacactgactaaggtttcaacaaagaacct |
44265683 |
T |
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| Q |
119 |
tttcttcatccatgatgttgttgcactttcaggtgaattcgcatttgcatttgaatttgaatttgaagattcaaggtcagggagccatttggaagcatag |
218 |
Q |
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| T |
44265684 |
tttcttcatccatgatgttgttacactttcaggtgaatttgcatttgcatttgaatttgaatttgaagattcaaggtcagggagccatttggaagcatag |
44265783 |
T |
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| Q |
219 |
tgagtgatgatggaaccgattaaatcggaacgaacacctttttgtttgatgtttgaaagggtcttaatgaagcaatccatgtcaaggatgcatg |
312 |
Q |
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| T |
44265784 |
tgagtgatgatggaaccgattaaatcggaacgaacacctttttgtttgatgtttgaaagggtcttaatgaagcaatccatgtcaaggatgcatg |
44265877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 64; Significance: 6e-28; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 47 - 154
Target Start/End: Complemental strand, 2835355 - 2835248
Alignment:
| Q |
47 |
aaggaggaagttgcatggaatggaatctttgtctggtggaagaacactgactaaggtttcaacaaagaaccttttcttcatccatgatgttgttgcactt |
146 |
Q |
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| T |
2835355 |
aaggagaaagttacatggaattgaatctttctctggtggtagaacattaactaaggtttctacaaagaaccttttcttcatccatgatgttgttacactc |
2835256 |
T |
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| Q |
147 |
tcaggtga |
154 |
Q |
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| T |
2835255 |
tctggtga |
2835248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 194 - 241
Target Start/End: Complemental strand, 2835214 - 2835167
Alignment:
| Q |
194 |
gtcagggagccatttggaagcatagtgagtgatgatggaaccgattaa |
241 |
Q |
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| T |
2835214 |
gtcagggagccatttggaggcatagtgtgtgattatggaaccgattaa |
2835167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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