View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4017_high_29 (Length: 307)

Name: NF4017_high_29
Description: NF4017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4017_high_29
NF4017_high_29
[»] chr5 (6 HSPs)
chr5 (97-288)||(32621370-32621560)
chr5 (81-283)||(32621629-32621831)
chr5 (1-72)||(31402071-31402145)
chr5 (1-71)||(31397214-31397287)
chr5 (78-116)||(32621334-32621372)
chr5 (1-46)||(2785191-2785239)
[»] chr6 (4 HSPs)
chr6 (1-72)||(6438292-6438364)
chr6 (1-71)||(5343271-5343344)
chr6 (1-46)||(6005233-6005281)
chr6 (1-46)||(33336165-33336213)
[»] chr4 (3 HSPs)
chr4 (1-45)||(5732481-5732525)
chr4 (1-70)||(45348039-45348109)
chr4 (1-70)||(45357518-45357588)
[»] chr3 (6 HSPs)
chr3 (1-45)||(18656251-18656295)
chr3 (1-71)||(8516886-8516959)
chr3 (1-71)||(10207724-10207797)
chr3 (1-46)||(8512031-8512079)
chr3 (1-45)||(2673153-2673200)
chr3 (1-45)||(2677309-2677356)
[»] chr1 (3 HSPs)
chr1 (1-72)||(39445290-39445363)
chr1 (5-70)||(25445315-25445382)
chr1 (1-72)||(43988687-43988761)
[»] scaffold0464 (1 HSPs)
scaffold0464 (1-71)||(154-226)
[»] scaffold0197 (1 HSPs)
scaffold0197 (1-71)||(19386-19459)
[»] scaffold0028 (1 HSPs)
scaffold0028 (1-71)||(149177-149250)
[»] chr8 (1 HSPs)
chr8 (1-71)||(35745182-35745255)
[»] scaffold0259 (1 HSPs)
scaffold0259 (1-46)||(2472-2520)
[»] scaffold0479 (1 HSPs)
scaffold0479 (30-71)||(13140-13181)


Alignment Details
Target: chr5 (Bit Score: 124; Significance: 8e-64; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 97 - 288
Target Start/End: Original strand, 32621370 - 32621560
Alignment:
Q  97 tctattggtttcaataatctcagcagcagaggatcagaaaccactgatcatctaatcaatcatcgacatccacatcaatatcgtggaaacacaaacacca 196  Q
    |||| ||||||||| |||||||  || ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  32621370 tctaatggtttcaacaatctcaatagtagaggatcagaaaccactgctcatctaatcaatcgtcgacatccacatcaatatcgtggaaacacaaacacca 32621469  T
Q  197 cgactatttatggtatatcatccatcctggtcatagataacatgtcattctcgtccttatatccaactattggaacacaacttggagttgga 288  Q
     ||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||| ||| |||||| ||||| ||||    
T  32621470 tgactatttatggtgtatcatccatcctggtcatagataacaagtcattctcctccttatatcc-actatcggagcacaacctggagctgga 32621560  T

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Target: chr5; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 81 - 283
Target Start/End: Complemental strand, 32621831 - 32621629
Alignment:
Q  81 ttcttcttcttcgttttctattggtttcaataatctcagcagcagaggatcagaaaccactgatcatctaatcaatcatcgacatccacatcaatatcgt 180  Q
    |||||||| ||||| || | ||||||||||| |||| || |  |||||  ||| ||||| |||||| || ||||||||||  |||||| |||||||||||    
T  32621831 ttcttctttttcgtattttgttggtttcaatgatcttagtaatagagggccaggaaccattgatcagctgatcaatcatcaccatccatatcaatatcgt 32621732  T
Q  181 ggaaacacaaacaccacgactatttatggtatatcatccatcctggtcatagataacatgtcattctcgtccttatatccaactattggaacacaacttg 280  Q
    ||||||| |||||||||| ||| | |||||  ||| |||||| ||| |||||||| |||||||||||| |||||||||||||||||||||  |||| |||    
T  32621731 ggaaacataaacaccacggctactaatggtgaatcgtccatcatgggcatagataccatgtcattctcctccttatatccaactattggaggacaaattg 32621632  T
Q  281 gag 283  Q
    |||    
T  32621631 gag 32621629  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 31402071 - 31402145
Alignment:
Q  1 atcacttgctccacacatcattg---tattcccattggtgtgaaggttcgtttgtagatccgaatacacaacaaa 72  Q
    |||||||||||||||||||||||   ||||| ||||||||||||||||| || || || |||||| |||||||||    
T  31402071 atcacttgctccacacatcattgatttattctcattggtgtgaaggttcattagttgagccgaattcacaacaaa 31402145  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 31397214 - 31397287
Alignment:
Q  1 atcacttgctccacacatcattg---tattcccattggtgtgaaggttcgtttgtagatccgaatacacaacaa 71  Q
    |||||||||||||||||||||||   ||||| ||||||||||||||||| || || || |||||| ||||||||    
T  31397214 atcacttgctccacacatcattgatttattctcattggtgtgaaggttcattagttgagccgaattcacaacaa 31397287  T

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Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 116
Target Start/End: Original strand, 32621334 - 32621372
Alignment:
Q  78 ttcttcttcttcttcgttttctattggtttcaataatct 116  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  32621334 ttcttcttcttcttcattttctattggtttcaataatct 32621372  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 2785239 - 2785191
Alignment:
Q  1 atcacttgctccacacatcattg---tattcccattggtgtgaaggttc 46  Q
    |||||||||||||||||||||||   ||||| |||||||||||||||||    
T  2785239 atcacttgctccacacatcattggtttattctcattggtgtgaaggttc 2785191  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 6438364 - 6438292
Alignment:
Q  1 atcacttgctccacacatcattgtat-tcccattggtgtgaaggttcgtttgtagatccgaatacacaacaaa 72  Q
    |||||||||||||||||||||||| | |  |||||||||||||||||||||||||| ||| |  |||||||||    
T  6438364 atcacttgctccacacatcattgtttatttcattggtgtgaaggttcgtttgtagaaccggaatcacaacaaa 6438292  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 5343344 - 5343271
Alignment:
Q  1 atcacttgctccacacatcattg---tattcccattggtgtgaaggttcgtttgtagatccgaatacacaacaa 71  Q
    |||||||||||||||||||||||   ||||| ||||||||||||||||| || || || ||| || ||||||||    
T  5343344 atcacttgctccacacatcattgacttattctcattggtgtgaaggttcattagttgagccggattcacaacaa 5343271  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 6005281 - 6005233
Alignment:
Q  1 atcacttgctccacacatcattg---tattcccattggtgtgaaggttc 46  Q
    |||||||||||||||||||||||   ||||| |||||||||||||||||    
T  6005281 atcacttgctccacacatcattggtttattctcattggtgtgaaggttc 6005233  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 33336165 - 33336213
Alignment:
Q  1 atcacttgctccacacatcattg---tattcccattggtgtgaaggttc 46  Q
    |||||||||||||||||||||||   ||||| |||||||||||||||||    
T  33336165 atcacttgctccacacatcattggtttattctcattggtgtgaaggttc 33336213  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 5732525 - 5732481
Alignment:
Q  1 atcacttgctccacacatcattgtattcccattggtgtgaaggtt 45  Q
    |||||||||||||||||||||||||||  ||||||||||||||||    
T  5732525 atcacttgctccacacatcattgtattttcattggtgtgaaggtt 5732481  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 45348039 - 45348109
Alignment:
Q  1 atcacttgctccacacatcattgtat-tcccattggtgtgaaggttcgtttgtagatccgaatacacaaca 70  Q
    |||||||||||||||||||||||| | |  ||||||||||||||||  |||||||| ||| || |||||||    
T  45348039 atcacttgctccacacatcattgtttatttcattggtgtgaaggtttctttgtagaaccggattcacaaca 45348109  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 45357518 - 45357588
Alignment:
Q  1 atcacttgctccacacatcattgtat-tcccattggtgtgaaggttcgtttgtagatccgaatacacaaca 70  Q
    |||||||||||||||||||||||| | |  ||||||||||||||||  |||||||| ||| || |||||||    
T  45357518 atcacttgctccacacatcattgtttatttcattggtgtgaaggtttctttgtagaaccggattcacaaca 45357588  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 18656295 - 18656251
Alignment:
Q  1 atcacttgctccacacatcattgtattcccattggtgtgaaggtt 45  Q
    |||||||||||||||||||||||||||  ||||||||||||||||    
T  18656295 atcacttgctccacacatcattgtattttcattggtgtgaaggtt 18656251  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 8516959 - 8516886
Alignment:
Q  1 atcacttgctccacacatcattg---tattcccattggtgtgaaggttcgtttgtagatccgaatacacaacaa 71  Q
    |||||||||||||||||||||||   ||||| ||||||||||||||||| || || || ||| || ||||||||    
T  8516959 atcacttgctccacacatcattgatttattctcattggtgtgaaggttcattagttgagccggattcacaacaa 8516886  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 10207797 - 10207724
Alignment:
Q  1 atcacttgctccacacatcattg---tattcccattggtgtgaaggttcgtttgtagatccgaatacacaacaa 71  Q
    |||||||||||||||||||||||   ||||| ||||||||||||||||| || || || ||| || ||||||||    
T  10207797 atcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattcacaacaa 10207724  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 8512079 - 8512031
Alignment:
Q  1 atcacttgctccacacatcattg---tattcccattggtgtgaaggttc 46  Q
    |||||||||||||||||||||||   ||||| |||||||||||||||||    
T  8512079 atcacttgctccacacatcattgatttattctcattggtgtgaaggttc 8512031  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 2673153 - 2673200
Alignment:
Q  1 atcacttgctccacacatcattg---tattcccattggtgtgaaggtt 45  Q
    |||||||||||||||||||||||   ||||| ||||||||||||||||    
T  2673153 atcacttgctccacacatcattggtttattctcattggtgtgaaggtt 2673200  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 2677309 - 2677356
Alignment:
Q  1 atcacttgctccacacatcattg---tattcccattggtgtgaaggtt 45  Q
    |||||||||||||||||||||||   ||||| ||||||||||||||||    
T  2677309 atcacttgctccacacatcattggtttattctcattggtgtgaaggtt 2677356  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 39445363 - 39445290
Alignment:
Q  1 atcacttgctccacacatcattg---tattcccattggtgtgaaggttcgtttgtagatccgaatacacaacaaa 72  Q
    |||||||||||||||||||||||   |||| | ||||||||||||||||||||||||| ||| || |||||||||    
T  39445363 atcacttgctccacacatcattggtttatttc-attggtgtgaaggttcgtttgtagaaccggattcacaacaaa 39445290  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 70
Target Start/End: Original strand, 25445315 - 25445382
Alignment:
Q  5 cttgctccacacatcattg---tattcccattggtgtgaaggttcgtttgtagatccgaatacacaaca 70  Q
    |||||||||||||||||||   |||| | ||||||||||||||||||||||||| ||| || |||||||    
T  25445315 cttgctccacacatcattggtttatttc-attggtgtgaaggttcgtttgtagaaccggattcacaaca 25445382  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 43988687 - 43988761
Alignment:
Q  1 atcacttgctccacacatcattg---tattcccattggtgtgaaggttcgtttgtagatccgaatacacaacaaa 72  Q
    |||||||||||||||||||||||   ||||| |||||| |||||||||| || || || ||| || |||||||||    
T  43988687 atcacttgctccacacatcattgatttattctcattggcgtgaaggttcattagttgagccggattcacaacaaa 43988761  T

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Target: scaffold0464 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 226 - 154
Alignment:
Q  1 atcacttgctccacacatcattg---tattcccattggtgtgaaggttcgtttgtagatccgaatacacaacaa 71  Q
    ||||||||||||||||||| |||   |||| | ||||||||||||||||||||||||| ||| || ||||||||    
T  226 atcacttgctccacacatctttggtttatttc-attggtgtgaaggttcgtttgtagaaccggattcacaacaa 154  T

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Target: scaffold0197 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 19386 - 19459
Alignment:
Q  1 atcacttgctccacacatcattg---tattcccattggtgtgaaggttcgtttgtagatccgaatacacaacaa 71  Q
    |||||||||||||||||||||||   ||||| ||||||||||||||||| || || || ||| || ||||||||    
T  19386 atcacttgctccacacatcattgatttattctcattggtgtgaaggttcattagttgagccggattcacaacaa 19459  T

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Target: scaffold0028 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 149177 - 149250
Alignment:
Q  1 atcacttgctccacacatcattg---tattcccattggtgtgaaggttcgtttgtagatccgaatacacaacaa 71  Q
    |||||||||||||||||||||||   ||||| ||||||||||||||||| || || || ||| || ||||||||    
T  149177 atcacttgctccacacatcattgatttattctcattggtgtgaaggttcattagttgagccggattcacaacaa 149250  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 35745255 - 35745182
Alignment:
Q  1 atcacttgctccacacatcattg---tattcccattggtgtgaaggttcgtttgtagatccgaatacacaacaa 71  Q
    |||||||||||||||||||||||   ||||| ||||||||||||||||| || || || ||| || ||||||||    
T  35745255 atcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattcacaacaa 35745182  T

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Target: scaffold0259 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 2472 - 2520
Alignment:
Q  1 atcacttgctccacacatcattg---tattcccattggtgtgaaggttc 46  Q
    |||||||||||||||||||||||   ||||| |||||||||||||||||    
T  2472 atcacttgctccacacatcattgatttattctcattggtgtgaaggttc 2520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0479 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0479
Description:

Target: scaffold0479; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 71
Target Start/End: Complemental strand, 13181 - 13140
Alignment:
Q  30 cattggtgtgaaggttcgtttgtagatccgaatacacaacaa 71  Q
    |||||||||||||||||||||||||| ||| || ||||||||    
T  13181 cattggtgtgaaggttcgtttgtagaaccggattcacaacaa 13140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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