View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4017_high_30 (Length: 300)
Name: NF4017_high_30
Description: NF4017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4017_high_30 |
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Alignment Details
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 21 - 283
Target Start/End: Original strand, 49993195 - 49993457
Alignment:
| Q |
21 |
aatttatactgtcctgctaatccaccagcaccatgacagcatggcatagcaccaaaccaaccacccaaaagattcattaacccaactgtcactgagagtg |
120 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
49993195 |
aatttatactgtcctgctaatcctccagcaccatgacagcatggcatagcaccaaaccaaccacccaaaagattcattaacccaactgtcactgaaagtg |
49993294 |
T |
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| Q |
121 |
aagttactgaaaagtccttggttggaaataaatcagaggatagtttgcaaacagctatcactgagttcaaaattgacaagggtagttgtggaatagtacc |
220 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
49993295 |
aagttactgaaaagtccttggttggaaataaatcagaggatagtttgcaaacagctatcaccgagttcaaaattgacaagggtagttgtggaatagtacc |
49993394 |
T |
|
| Q |
221 |
ctttataaaaccttgtttccatgcatgtttggaaaatttcactaactctatattagaaggtcc |
283 |
Q |
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| T |
49993395 |
ctttataaaaccttgtttccatgcatgtttagaaaatttcactaactctatattagaaggtcc |
49993457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 21 - 271
Target Start/End: Original strand, 25798038 - 25798288
Alignment:
| Q |
21 |
aatttatactgtcctgctaatccaccagcaccatgacagcatggcatagcaccaaaccaaccacccaaaagattcattaacccaactgtcactgagagtg |
120 |
Q |
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| T |
25798038 |
aatttatattgtcctgcgagtccaccggcaccatgacaagttggcacacaaccaaaccaacaaccgatcaaattcattagtccaactgtcactgaaattg |
25798137 |
T |
|
| Q |
121 |
aagttactgaaaagtccttggttggaaataaatcagaggatagtttgcaaacagctatcactgagttcaaaattgacaagggtagttgtggaatagtacc |
220 |
Q |
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| T |
25798138 |
aagtaactgaaaattccttttctggaaaaagatctgttgataacttacaaacagctatgacagagttcaaaattgacaatggaagttgaggaattgcacc |
25798237 |
T |
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| Q |
221 |
ctttataaaaccttgtttccatgcatgtttggaaaatttcactaactctat |
271 |
Q |
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| T |
25798238 |
tttgacaaaacctttcttccatgcatgtttagtgaatttcaccaattctat |
25798288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 21 - 250
Target Start/End: Complemental strand, 1875778 - 1875549
Alignment:
| Q |
21 |
aatttatactgtcctgctaatccaccagcaccatgacagcatggcatagcaccaaaccaaccacccaaaagattcattaacccaactgtcactgagagtg |
120 |
Q |
| |
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||||||||||||||||||| ||||||||||||||| || ||||||| ||||||||||||| ||| | | |||||| ||||||||||||||||| |||| |
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| T |
1875778 |
aatttatactgtcctgctagtccaccagcaccatggcaagatggcattgcaccaaaccaacaaccaaccaaattcatcaacccaactgtcactgaaagtg |
1875679 |
T |
|
| Q |
121 |
aagttactgaaaagtccttggttggaaataaatcagaggatagtttgcaaacagctatcactgagttcaaaattgacaagggtagttgtggaatagtacc |
220 |
Q |
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|||| |||||||||||||| ||||| ||||| || | || |||||||||||||| |||||||| |||| ||| || ||||| ||||| ||||| |
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| T |
1875678 |
aagtgactgaaaagtccttttcaggaaacaaatcctttgacaacttacaaacagctatcacagagttcaagattgtcaaaggaagttgaggaattgtacc |
1875579 |
T |
|
| Q |
221 |
ctttataaaaccttgtttccatgcatgttt |
250 |
Q |
| |
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|| |||||||||| ||||| |||||||| |
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| T |
1875578 |
tttgataaaacctttcttccaagcatgttt |
1875549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 21 - 234
Target Start/End: Complemental strand, 1808174 - 1807961
Alignment:
| Q |
21 |
aatttatactgtcctgctaatccaccagcaccatgacagcatggcatagcaccaaaccaaccacccaaaagattcattaacccaactgtcactgagagtg |
120 |
Q |
| |
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||||||||||||||||||| ||| |||||||||||||| ||||| ||||||||||||| ||| | | |||||||| |||||||||||||| | || |
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| T |
1808174 |
aatttatactgtcctgctagtcctccagcaccatgacaagttggcacagcaccaaaccaagaaccaactaaattcattagtccaactgtcactgaaattg |
1808075 |
T |
|
| Q |
121 |
aagttactgaaaagtccttggttggaaataaatcagaggatagtttgcaaacagctatcactgagttcaaaattgacaagggtagttgtggaatagtacc |
220 |
Q |
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| || |||||||| ||| | || || | ||| | |||| ||| ||||||||||||||||||||||| |||||||| || ||||||||||| | ||| |
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| T |
1808074 |
atgtaactgaaaattccctttcagggaaaagatctgttgataatttacaaacagctatcactgagttcaacattgacaatggaagttgtggaattgcacc |
1807975 |
T |
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| Q |
221 |
ctttataaaacctt |
234 |
Q |
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|| |||||||||| |
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| T |
1807974 |
tttaataaaacctt |
1807961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 2862239 - 2862183
Alignment:
| Q |
25 |
tatactgtcctgctaatccaccagcaccatgacagcatggcatagcaccaaaccaac |
81 |
Q |
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||||||| || || ||||||||||| ||||| || || ||||||||||||||||||| |
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| T |
2862239 |
tatactgaccagccaatccaccagctccatggcaacaaggcatagcaccaaaccaac |
2862183 |
T |
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