View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4017_high_31 (Length: 300)
Name: NF4017_high_31
Description: NF4017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4017_high_31 |
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Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 32 - 288
Target Start/End: Complemental strand, 36759549 - 36759293
Alignment:
| Q |
32 |
aagagcataaacaattgaactttgaggaattaaaacaaccttcctagttcctatgagttatgattctcccttggttcttctcccacagtacagtgcaaca |
131 |
Q |
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| T |
36759549 |
aagagcataaacaattgaacttggaggaattaaaacaaccttcctagttcctatgagttatgattctccgttggttcttctcccacagtacagtgcaaca |
36759450 |
T |
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| Q |
132 |
attttcattttaacgtttttactataataacannnnnnnacagaaaaattaataatataatagcattttactataacagtaccacctccgacagtagctt |
231 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36759449 |
attttcattttaacgtttttactataataacatttttttacagaaaaattaataatataatagcattttactataacagtaccacctccgacagtagctt |
36759350 |
T |
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| Q |
232 |
ttttacaggtaaaagaatttgctacactattggagataatccaagtatttctctgtg |
288 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36759349 |
ttttacaggtaaaagaatttgctacactattggagataatccaagtatttctctgtg |
36759293 |
T |
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