View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4017_high_37 (Length: 253)

Name: NF4017_high_37
Description: NF4017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4017_high_37
NF4017_high_37
[»] chr4 (18 HSPs)
chr4 (86-171)||(26593974-26594059)
chr4 (202-253)||(50052485-50052536)
chr4 (87-172)||(47951951-47952036)
chr4 (213-253)||(6034047-6034087)
chr4 (213-253)||(11511519-11511559)
chr4 (213-253)||(50526228-50526268)
chr4 (202-253)||(480504-480555)
chr4 (202-253)||(29234302-29234353)
chr4 (215-253)||(40574784-40574822)
chr4 (215-253)||(55475196-55475234)
chr4 (213-253)||(29239889-29239929)
chr4 (213-253)||(41236350-41236390)
chr4 (213-253)||(48183106-48183146)
chr4 (204-251)||(42044426-42044473)
chr4 (215-253)||(8343220-8343258)
chr4 (215-253)||(31910197-31910235)
chr4 (213-253)||(3481657-3481697)
chr4 (213-253)||(54473590-54473630)
[»] chr2 (24 HSPs)
chr2 (203-253)||(28863448-28863498)
chr2 (210-253)||(19930877-19930920)
chr2 (215-253)||(40613959-40613997)
chr2 (213-253)||(9058483-9058523)
chr2 (213-253)||(20700818-20700858)
chr2 (213-253)||(30915466-30915506)
chr2 (213-253)||(33436157-33436197)
chr2 (206-253)||(33436207-33436254)
chr2 (208-253)||(5574545-5574590)
chr2 (208-253)||(7465792-7465837)
chr2 (213-253)||(17473023-17473063)
chr2 (213-253)||(27864707-27864747)
chr2 (213-253)||(40701481-40701521)
chr2 (213-253)||(41575140-41575180)
chr2 (213-248)||(28381717-28381752)
chr2 (215-253)||(2533129-2533167)
chr2 (213-246)||(17823787-17823820)
chr2 (208-253)||(32505705-32505750)
chr2 (215-252)||(38273200-38273237)
chr2 (213-253)||(4060688-4060728)
chr2 (213-253)||(10249439-10249479)
chr2 (213-253)||(13438346-13438386)
chr2 (94-157)||(19149879-19149943)
chr2 (213-253)||(38882871-38882910)
[»] chr8 (20 HSPs)
chr8 (19-61)||(38862266-38862308)
chr8 (213-252)||(4854921-4854960)
chr8 (206-253)||(37038475-37038522)
chr8 (215-253)||(15048238-15048276)
chr8 (170-207)||(38862169-38862206)
chr8 (213-253)||(5957833-5957873)
chr8 (213-253)||(20074991-20075031)
chr8 (215-253)||(10621144-10621182)
chr8 (213-253)||(504178-504218)
chr8 (213-253)||(1179997-1180037)
chr8 (213-249)||(9122198-9122234)
chr8 (213-253)||(12831050-12831090)
chr8 (213-253)||(15197336-15197376)
chr8 (213-253)||(34012353-34012393)
chr8 (213-253)||(40424000-40424040)
chr8 (215-253)||(30479531-30479569)
chr8 (215-253)||(43414638-43414676)
chr8 (207-252)||(44507145-44507190)
chr8 (217-253)||(14547929-14547965)
chr8 (213-253)||(23122654-23122694)
[»] chr7 (27 HSPs)
chr7 (207-253)||(3434559-3434605)
chr7 (213-253)||(8080440-8080480)
chr7 (213-253)||(19329845-19329885)
chr7 (215-253)||(21234406-21234444)
chr7 (207-253)||(36361970-36362016)
chr7 (213-251)||(38837220-38837258)
chr7 (215-252)||(31735889-31735926)
chr7 (215-252)||(46374860-46374897)
chr7 (213-253)||(7389392-7389432)
chr7 (213-253)||(11044191-11044231)
chr7 (213-253)||(19436244-19436284)
chr7 (213-253)||(35137536-35137576)
chr7 (211-246)||(3783996-3784031)
chr7 (202-252)||(26296636-26296686)
chr7 (204-246)||(35468919-35468961)
chr7 (207-253)||(36362023-36362069)
chr7 (215-249)||(40846174-40846208)
chr7 (215-248)||(18207185-18207218)
chr7 (215-248)||(35522881-35522914)
chr7 (215-248)||(39255985-39256018)
chr7 (215-252)||(46033859-46033896)
chr7 (213-253)||(4999571-4999611)
chr7 (91-166)||(21774055-21774131)
chr7 (213-253)||(38267043-38267083)
chr7 (213-253)||(40957710-40957750)
chr7 (202-246)||(45223034-45223078)
chr7 (92-147)||(49101323-49101379)
[»] chr5 (17 HSPs)
chr5 (203-253)||(18520941-18520991)
chr5 (208-253)||(2740272-2740317)
chr5 (215-253)||(28177780-28177818)
chr5 (215-252)||(26720521-26720558)
chr5 (215-252)||(26990270-26990307)
chr5 (213-253)||(36875660-36875700)
chr5 (213-252)||(40145410-40145449)
chr5 (213-253)||(14831817-14831857)
chr5 (213-253)||(33149695-33149735)
chr5 (213-253)||(35785202-35785242)
chr5 (213-253)||(36732999-36733039)
chr5 (215-246)||(10356639-10356670)
chr5 (210-249)||(21370014-21370053)
chr5 (215-249)||(2252229-2252263)
chr5 (215-253)||(6679703-6679741)
chr5 (91-166)||(11777416-11777492)
chr5 (213-253)||(42414359-42414399)
[»] chr6 (11 HSPs)
chr6 (215-253)||(31110816-31110854)
chr6 (212-253)||(22880715-22880756)
chr6 (206-252)||(31976244-31976290)
chr6 (207-244)||(22422084-22422121)
chr6 (213-249)||(31953091-31953127)
chr6 (217-253)||(32869685-32869721)
chr6 (213-247)||(6209528-6209562)
chr6 (213-246)||(17598557-17598590)
chr6 (209-246)||(28536550-28536587)
chr6 (217-253)||(946383-946419)
chr6 (213-253)||(31109457-31109497)
[»] chr3 (25 HSPs)
chr3 (215-252)||(26141590-26141627)
chr3 (205-253)||(8956757-8956805)
chr3 (213-253)||(11095410-11095450)
chr3 (213-249)||(14623900-14623936)
chr3 (213-253)||(49607417-49607457)
chr3 (213-253)||(53982014-53982054)
chr3 (215-253)||(52629305-52629343)
chr3 (208-253)||(24700011-24700056)
chr3 (208-253)||(35536624-35536669)
chr3 (213-253)||(33644203-33644243)
chr3 (213-253)||(54868952-54868992)
chr3 (203-246)||(21746247-21746290)
chr3 (96-169)||(47595056-47595131)
chr3 (214-253)||(48587148-48587187)
chr3 (215-253)||(11347979-11348017)
chr3 (215-253)||(33118908-33118946)
chr3 (215-248)||(47531870-47531903)
chr3 (213-253)||(8076396-8076436)
chr3 (213-249)||(13898116-13898152)
chr3 (208-248)||(17470403-17470443)
chr3 (215-251)||(26754700-26754736)
chr3 (213-253)||(27714948-27714988)
chr3 (213-253)||(31456692-31456732)
chr3 (213-253)||(36707481-36707521)
chr3 (215-251)||(45058611-45058647)
[»] chr1 (16 HSPs)
chr1 (215-252)||(32813252-32813289)
chr1 (208-253)||(51898740-51898785)
chr1 (213-253)||(2581918-2581958)
chr1 (213-253)||(9474933-9474973)
chr1 (213-253)||(27564792-27564832)
chr1 (213-253)||(3000322-3000362)
chr1 (213-253)||(23597148-23597188)
chr1 (213-253)||(37649201-37649241)
chr1 (213-253)||(44548433-44548473)
chr1 (213-253)||(47452377-47452417)
chr1 (213-253)||(48716339-48716379)
chr1 (213-248)||(38632383-38632418)
chr1 (215-249)||(41608554-41608588)
chr1 (209-246)||(26274431-26274468)
chr1 (208-253)||(50630456-50630501)
chr1 (213-253)||(38595157-38595197)
[»] scaffold1268 (1 HSPs)
scaffold1268 (213-252)||(987-1026)
[»] scaffold1267 (1 HSPs)
scaffold1267 (213-252)||(987-1026)


Alignment Details
Target: chr4 (Bit Score: 82; Significance: 8e-39; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 86 - 171
Target Start/End: Complemental strand, 26594059 - 26593974
Alignment:
Q  86 tggacttgtgaaattaccaaattaccctgccactagggtgtgtataaaagtggtatggaaaagggtgtttatgaataatttctctt 171  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  26594059 tggacttgtgaaattaccaaattaccctgccactagggtgtgtataaaagtggtatggaaaagggtgtttatgaatcatttctctt 26593974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 202 - 253
Target Start/End: Complemental strand, 50052536 - 50052485
Alignment:
Q  202 aaaaaatagaataatgatacatagacatccttaggtggcaatacaccctttg 253  Q
    |||||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  50052536 aaaaaaaagagtaatgatacatagacatccttaggtggcaatacaccctttg 50052485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 87 - 172
Target Start/End: Complemental strand, 47952036 - 47951951
Alignment:
Q  87 ggacttgtgaaattaccaaattaccctgccactagggtgtgtataaaagtggtatggaaaagggtgtttatgaataatttctcttt 172  Q
    |||||||||||||||||||| |||||| |   |||||||| || ||||||| ||||||||||||||| || |||| ||||||||||    
T  47952036 ggacttgtgaaattaccaaaataccctacgcatagggtgtataaaaaagtgttatggaaaagggtgtataggaatcatttctcttt 47951951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 213 - 253
Target Start/End: Original strand, 6034047 - 6034087
Alignment:
Q  213 taatgatacatagacatccttaggtggcaatacaccctttg 253  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  6034047 taatgatacatagacacccttaggtggcaatacaccctttg 6034087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 213 - 253
Target Start/End: Complemental strand, 11511559 - 11511519
Alignment:
Q  213 taatgatacatagacatccttaggtggcaatacaccctttg 253  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  11511559 taatgatacatagacacccttaggtggcaatacaccctttg 11511519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 213 - 253
Target Start/End: Complemental strand, 50526268 - 50526228
Alignment:
Q  213 taatgatacatagacatccttaggtggcaatacaccctttg 253  Q
    |||||||||||||||||| ||||||||||||||||||||||    
T  50526268 taatgatacatagacatctttaggtggcaatacaccctttg 50526228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 202 - 253
Target Start/End: Complemental strand, 480555 - 480504
Alignment:
Q  202 aaaaaatagaataatgatacatagacatccttaggtggcaatacaccctttg 253  Q
    |||||| ||| |||||||||||||||| ||||||||| ||||||||||||||    
T  480555 aaaaaaaagagtaatgatacatagacacccttaggtgacaatacaccctttg 480504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 202 - 253
Target Start/End: Complemental strand, 29234353 - 29234302
Alignment:
Q  202 aaaaaatagaataatgatacatagacatccttaggtggcaatacaccctttg 253  Q
    ||||| |||| |||||||||||||||| |||||| |||||||||||||||||    
T  29234353 aaaaattagagtaatgatacatagacacccttagatggcaatacaccctttg 29234302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 215 - 253
Target Start/End: Original strand, 40574784 - 40574822
Alignment:
Q  215 atgatacatagacatccttaggtggcaatacaccctttg 253  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  40574784 atgatacatagacatccttaggtggtaatacaccctttg 40574822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 215 - 253
Target Start/End: Original strand, 55475196 - 55475234
Alignment:
Q  215 atgatacatagacatccttaggtggcaatacaccctttg 253  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  55475196 atgatacataaacatccttaggtggcaatacaccctttg 55475234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 213 - 253
Target Start/End: Original strand, 29239889 - 29239929
Alignment:
Q  213 taatgatacatagacatccttaggtggcaatacaccctttg 253  Q
    |||||||||||||||| ||||||||||||||||||| ||||    
T  29239889 taatgatacatagacacccttaggtggcaatacaccatttg 29239929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 213 - 253
Target Start/End: Original strand, 41236350 - 41236390
Alignment:
Q  213 taatgatacatagacatccttaggtggcaatacaccctttg 253  Q
    |||||||||||||||| ||||||||||||||||||| ||||    
T  41236350 taatgatacatagacacccttaggtggcaatacaccttttg 41236390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 213 - 253
Target Start/End: Complemental strand, 48183146 - 48183106
Alignment:
Q  213 taatgatacatagacatccttaggtggcaatacaccctttg 253  Q
    |||||||||||||||| ||||| ||||||||||||||||||    
T  48183146 taatgatacatagacacccttacgtggcaatacaccctttg 48183106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 204 - 251
Target Start/End: Complemental strand, 42044473 - 42044426
Alignment:
Q  204 aaaatagaataatgatacatagacatccttaggtggcaatacaccctt 251  Q
    |||| ||| |||||||||||||||| ||||||||||||||||| ||||    
T  42044473 aaaaaagagtaatgatacatagacacccttaggtggcaatacatcctt 42044426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 253
Target Start/End: Complemental strand, 8343258 - 8343220
Alignment:
Q  215 atgatacatagacatccttaggtggcaatacaccctttg 253  Q
    |||||||||| ||||||||||||||||||||| ||||||    
T  8343258 atgatacataaacatccttaggtggcaatacatcctttg 8343220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 253
Target Start/End: Original strand, 31910197 - 31910235
Alignment:
Q  215 atgatacatagacatccttaggtggcaatacaccctttg 253  Q
    |||||||||||||||||||||||| |||||||| |||||    
T  31910197 atgatacatagacatccttaggtgacaatacactctttg 31910235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 213 - 253
Target Start/End: Original strand, 3481657 - 3481697
Alignment:
Q  213 taatgatacatagacatccttaggtggcaatacaccctttg 253  Q
    |||||||||||||||| | |||||||||||||||| |||||    
T  3481657 taatgatacatagacacctttaggtggcaatacactctttg 3481697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 213 - 253
Target Start/End: Complemental strand, 54473630 - 54473590
Alignment:
Q  213 taatgatacatagacatccttaggtggcaatacaccctttg 253  Q
    |||||||||||||||| ||||||||| ||||||||| ||||    
T  54473630 taatgatacatagacacccttaggtgacaatacaccatttg 54473590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 203 - 253
Target Start/End: Original strand, 28863448 - 28863498
Alignment:
Q  203 aaaaatagaataatgatacatagacatccttaggtggcaatacaccctttg 253  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  28863448 aaaaatagaataatgatacatagacacccttaggtggcaatacaccctttg 28863498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 210 - 253
Target Start/End: Complemental strand, 19930920 - 19930877
Alignment:
Q  210 gaataatgatacatagacatccttaggtggcaatacaccctttg 253  Q
    ||||||||||||||||||| ||||||||||||||||||||||||    
T  19930920 gaataatgatacatagacacccttaggtggcaatacaccctttg 19930877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 215 - 253
Target Start/End: Complemental strand, 40613997 - 40613959
Alignment:
Q  215 atgatacatagacatccttaggtggcaatacaccctttg 253  Q
    |||||||||||||||||||||||||||||||||||||||    
T  40613997 atgatacatagacatccttaggtggcaatacaccctttg 40613959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 213 - 253
Target Start/End: Original strand, 9058483 - 9058523
Alignment:
Q  213 taatgatacatagacatccttaggtggcaatacaccctttg 253  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  9058483 taatgatacatagacacccttaggtggcaatacaccctttg 9058523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 213 - 253
Target Start/End: Original strand, 20700818 - 20700858
Alignment:
Q  213 taatgatacatagacatccttaggtggcaatacaccctttg 253  Q
    |||||||||||||||||||||| ||||||||||||||||||    
T  20700818 taatgatacatagacatccttatgtggcaatacaccctttg 20700858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 213 - 253
Target Start/End: Original strand, 30915466 - 30915506
Alignment:
Q  213 taatgatacatagacatccttaggtggcaatacaccctttg 253  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  30915466 taatgatacatagacacccttaggtggcaatacaccctttg 30915506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 213 - 253
Target Start/End: Complemental strand, 33436197 - 33436157
Alignment:
Q  213 taatgatacatagacatccttaggtggcaatacaccctttg 253  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  33436197 taatgatacatagacacccttaggtggcaatacaccctttg 33436157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 206 - 253
Target Start/End: Original strand, 33436207 - 33436254
Alignment:
Q  206 aatagaataatgatacatagacatccttaggtggcaatacaccctttg 253  Q
    |||||| ||||||||||||||||||||||| |||||||||||| ||||    
T  33436207 aatagagtaatgatacatagacatccttagatggcaatacaccttttg 33436254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 208 - 253
Target Start/End: Complemental strand, 5574590 - 5574545
Alignment:
Q  208 tagaataatgatacatagacatccttaggtggcaatacaccctttg 253  Q
    |||| ||||||||||||||||  |||||||||||||||||||||||    
T  5574590 tagagtaatgatacatagacactcttaggtggcaatacaccctttg 5574545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 208 - 253
Target Start/End: Complemental strand, 7465837 - 7465792
Alignment:
Q  208 tagaataatgatacatagacatccttaggtggcaatacaccctttg 253  Q
    |||| |||||||||||||||| |||||| |||||||||||||||||    
T  7465837 tagagtaatgatacatagacacccttagatggcaatacaccctttg 7465792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 213 - 253
Target Start/End: Original strand, 17473023 - 17473063
Alignment:
Q  213 taatgatacatagacatccttaggtggcaatacaccctttg 253  Q
    |||||||||||||||| |||||| |||||||||||||||||    
T  17473023 taatgatacatagacacccttagatggcaatacaccctttg 17473063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 213 - 253
Target Start/End: Original strand, 27864707 - 27864747
Alignment:
Q  213 taatgatacatagacatccttaggtggcaatacaccctttg 253  Q
    |||||||||||||||| ||||| ||||||||||||||||||    
T  27864707 taatgatacatagacacccttatgtggcaatacaccctttg 27864747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 213 - 253
Target Start/End: Original strand, 40701481 - 40701521
Alignment:
Q  213 taatgatacatagacatccttaggtggcaatacaccctttg 253  Q
    |||||||||||||||| ||||||||||||||||||| ||||    
T  40701481 taatgatacatagacacccttaggtggcaatacaccttttg 40701521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 213 - 253
Target Start/End: Original strand, 41575140 - 41575180
Alignment:
Q  213 taatgatacatagacatccttaggtggcaatacaccctttg 253  Q
    ||||||||||||||||||||||| ||| |||||||||||||    
T  41575140 taatgatacatagacatccttagatggtaatacaccctttg 41575180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 213 - 248
Target Start/End: Complemental strand, 28381752 - 28381717
Alignment:
Q  213 taatgatacatagacatccttaggtggcaatacacc 248  Q
    |||||||||||||||| |||||||||||||||||||    
T  28381752 taatgatacatagacacccttaggtggcaatacacc 28381717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 253
Target Start/End: Original strand, 2533129 - 2533167
Alignment:
Q  215 atgatacatagacatccttaggtggcaatacaccctttg 253  Q
    |||||||||||||||||||| ||||||||||| ||||||    
T  2533129 atgatacatagacatccttaagtggcaatacatcctttg 2533167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 213 - 246
Target Start/End: Original strand, 17823787 - 17823820
Alignment:
Q  213 taatgatacatagacatccttaggtggcaataca 246  Q
    |||||||||||| |||||||||||||||||||||    
T  17823787 taatgatacatatacatccttaggtggcaataca 17823820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 208 - 253
Target Start/End: Complemental strand, 32505750 - 32505705
Alignment:
Q  208 tagaataatgatacatagacatccttaggtggcaatacaccctttg 253  Q
    |||| |||||||||||||||| ||||||||| ||||||||| ||||    
T  32505750 tagagtaatgatacatagacacccttaggtgacaatacaccttttg 32505705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 215 - 252
Target Start/End: Complemental strand, 38273237 - 38273200
Alignment:
Q  215 atgatacatagacatccttaggtggcaatacacccttt 252  Q
    ||||||||||||||| ||||| ||||||||||||||||    
T  38273237 atgatacatagacattcttagatggcaatacacccttt 38273200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 213 - 253
Target Start/End: Original strand, 4060688 - 4060728
Alignment:
Q  213 taatgatacatagacatccttaggtggcaatacaccctttg 253  Q
    |||||||||||||||| ||||||||| ||||||||| ||||    
T  4060688 taatgatacatagacacccttaggtgacaatacaccttttg 4060728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 213 - 253
Target Start/End: Complemental strand, 10249479 - 10249439
Alignment:
Q  213 taatgatacatagacatccttaggtggcaatacaccctttg 253  Q
    |||||||||||||||| ||||||||| ||||||||| ||||    
T  10249479 taatgatacatagacacccttaggtgacaatacaccttttg 10249439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 213 - 253
Target Start/End: Original strand, 13438346 - 13438386
Alignment:
Q  213 taatgatacatagacatccttaggtggcaatacaccctttg 253  Q
    |||||||||||||||| ||||||||| ||||||| ||||||    
T  13438346 taatgatacatagacacccttaggtgacaatacatcctttg 13438386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 157
Target Start/End: Original strand, 19149879 - 19149943
Alignment:
Q  94 tgaaattaccaaattaccctgccactagggtgtgtataaa-agtggtatggaaaagggtgtttat 157  Q
    |||||||||||||  ||||| ||| |  |||||||| ||| ||||||||||||||||||||||||    
T  19149879 tgaaattaccaaaacaccctcccaatgaggtgtgtacaaagagtggtatggaaaagggtgtttat 19149943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 213 - 253
Target Start/End: Complemental strand, 38882910 - 38882871
Alignment:
Q  213 taatgatacatagacatccttaggtggcaatacaccctttg 253  Q
    |||||||||||||||| ||||||||||||||| ||||||||    
T  38882910 taatgatacatagacacccttaggtggcaata-accctttg 38882871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 38862308 - 38862266
Alignment:
Q  19 gctaggcgagtgggcgaccatataatattacacacatataata 61  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  38862308 gctaggcgagtgggcgaccatataatattacacacatataata 38862266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 213 - 252
Target Start/End: Complemental strand, 4854960 - 4854921
Alignment:
Q  213 taatgatacatagacatccttaggtggcaatacacccttt 252  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  4854960 taatgatacatagacatccttaggtggcaatacacccttt 4854921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 206 - 253
Target Start/End: Original strand, 37038475 - 37038522
Alignment:
Q  206 aatagaataatgatacatagacatccttaggtggcaatacaccctttg 253  Q
    |||||| |||||||||||||||||| ||||||||||||||||||||||    
T  37038475 aatagagtaatgatacatagacatctttaggtggcaatacaccctttg 37038522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 215 - 253
Target Start/End: Complemental strand, 15048276 - 15048238
Alignment:
Q  215 atgatacatagacatccttaggtggcaatacaccctttg 253  Q
    |||||||||||||||||||||||||||||||||||||||    
T  15048276 atgatacatagacatccttaggtggcaatacaccctttg 15048238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 170 - 207
Target Start/End: Complemental strand, 38862206 - 38862169
Alignment:
Q  170 tttaatttaagtaacaagcaaataggccaatcaaaaaa 207  Q
    ||||||||||||||||||||||||||||||||||||||    
T  38862206 tttaatttaagtaacaagcaaataggccaatcaaaaaa 38862169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 213 - 253
Target Start/End: Original strand, 5957833 - 5957873
Alignment:
Q  213 taatgatacatagacatccttaggtggcaatacaccctttg 253  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  5957833 taatgatacatagacattcttaggtggcaatacaccctttg 5957873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 213 - 253
Target Start/End: Complemental strand, 20075031 - 20074991
Alignment:
Q  213 taatgatacatagacatccttaggtggcaatacaccctttg 253  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  20075031 taatgatacatagacatccttaggtggcaatacactctttg 20074991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 215 - 253
Target Start/End: Complemental strand, 10621182 - 10621144
Alignment:
Q  215 atgatacatagacatccttaggtggcaatacaccctttg 253  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  10621182 atgatacatagacatccttaggtggtaatacaccctttg 10621144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 213 - 253
Target Start/End: Complemental strand, 504218 - 504178
Alignment:
Q  213 taatgatacatagacatccttaggtggcaatacaccctttg 253  Q
    |||||||||||||||| ||||||||||||||||||| ||||    
T  504218 taatgatacatagacacccttaggtggcaatacaccttttg 504178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 213 - 253
Target Start/End: Complemental strand, 1180037 - 1179997
Alignment:
Q  213 taatgatacatagacatccttaggtggcaatacaccctttg 253  Q
    |||||||||||||||| |||||||||| |||||||||||||    
T  1180037 taatgatacatagacacccttaggtggtaatacaccctttg 1179997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 213 - 249
Target Start/End: Original strand, 9122198 - 9122234
Alignment:
Q  213 taatgatacatagacatccttaggtggcaatacaccc 249  Q
    |||||||||||||||| ||||||||||||||||||||    
T  9122198 taatgatacatagacacccttaggtggcaatacaccc 9122234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 213 - 253
Target Start/End: Original strand, 12831050 - 12831090
Alignment:
Q  213 taatgatacatagacatccttaggtggcaatacaccctttg 253  Q
    |||||||||||||||| ||||||||| ||||||||||||||    
T  12831050 taatgatacatagacacccttaggtgacaatacaccctttg 12831090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 213 - 253
Target Start/End: Original strand, 15197336 - 15197376
Alignment:
Q  213 taatgatacatagacatccttaggtggcaatacaccctttg 253  Q
    ||||||||||||||||  |||||||||||||||||||||||    
T  15197336 taatgatacatagacactcttaggtggcaatacaccctttg 15197376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 213 - 253
Target Start/End: Complemental strand, 34012393 - 34012353
Alignment:
Q  213 taatgatacatagacatccttaggtggcaatacaccctttg 253  Q
    |||||||||||||||| |||||||||| |||||||||||||    
T  34012393 taatgatacatagacacccttaggtggtaatacaccctttg 34012353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 213 - 253
Target Start/End: Complemental strand, 40424040 - 40424000
Alignment:
Q  213 taatgatacatagacatccttaggtggcaatacaccctttg 253  Q
    |||||||||||||| | ||||||||||||||||||||||||    
T  40424040 taatgatacatagatacccttaggtggcaatacaccctttg 40424000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 253
Target Start/End: Complemental strand, 30479569 - 30479531
Alignment:
Q  215 atgatacatagacatccttaggtggcaatacaccctttg 253  Q
    |||||||||| ||| ||||||||||||||||||||||||    
T  30479569 atgatacataaacacccttaggtggcaatacaccctttg 30479531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 253
Target Start/End: Complemental strand, 43414676 - 43414638
Alignment:
Q  215 atgatacatagacatccttaggtggcaatacaccctttg 253  Q
    ||||||||||||||||||||| |||||| ||||||||||    
T  43414676 atgatacatagacatccttagatggcaacacaccctttg 43414638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 207 - 252
Target Start/End: Complemental strand, 44507190 - 44507145
Alignment:
Q  207 atagaataatgatacatagacatccttaggtggcaatacacccttt 252  Q
    ||||| |||||||||||||||| |||||||||| ||||||| ||||    
T  44507190 atagagtaatgatacatagacacccttaggtggtaatacactcttt 44507145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 217 - 253
Target Start/End: Original strand, 14547929 - 14547965
Alignment:
Q  217 gatacatagacatccttaggtggcaatacaccctttg 253  Q
    |||||||||||| ||||||||||||||||||| ||||    
T  14547929 gatacatagacacccttaggtggcaatacaccatttg 14547965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 213 - 253
Target Start/End: Complemental strand, 23122694 - 23122654
Alignment:
Q  213 taatgatacatagacatccttaggtggcaatacaccctttg 253  Q
    |||||||||||||||| ||||| ||||||||||||| ||||    
T  23122694 taatgatacatagacacccttaagtggcaatacaccttttg 23122654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 207 - 253
Target Start/End: Original strand, 3434559 - 3434605
Alignment:
Q  207 atagaataatgatacatagacatccttaggtggcaatacaccctttg 253  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||    
T  3434559 atagagtaatgatacatagacatccttaggtggcaatacaccctttg 3434605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 213 - 253
Target Start/End: Complemental strand, 8080480 - 8080440
Alignment:
Q  213 taatgatacatagacatccttaggtggcaatacaccctttg 253  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  8080480 taatgatacatagacacccttaggtggcaatacaccctttg 8080440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 213 - 253
Target Start/End: Original strand, 19329845 - 19329885
Alignment:
Q  213 taatgatacatagacatccttaggtggcaatacaccctttg 253  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  19329845 taatgatacatagacatccttaggtggcaatacaccttttg 19329885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 215 - 253
Target Start/End: Original strand, 21234406 - 21234444
Alignment:
Q  215 atgatacatagacatccttaggtggcaatacaccctttg 253  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  21234406 atgatacatagacatccttaggtgacaatacaccctttg 21234444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 207 - 253
Target Start/End: Complemental strand, 36362016 - 36361970
Alignment:
Q  207 atagaataatgatacatagacatccttaggtggcaatacaccctttg 253  Q
    ||||| |||||||||||||||| ||||||||||||||||| ||||||    
T  36362016 atagagtaatgatacatagacacccttaggtggcaatacatcctttg 36361970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 213 - 251
Target Start/End: Original strand, 38837220 - 38837258
Alignment:
Q  213 taatgatacatagacatccttaggtggcaatacaccctt 251  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  38837220 taatgatacatagacacccttaggtggcaatacaccctt 38837258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 215 - 252
Target Start/End: Original strand, 31735889 - 31735926
Alignment:
Q  215 atgatacatagacatccttaggtggcaatacacccttt 252  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  31735889 atgatacatagacatccttaggtggcaatacactcttt 31735926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 215 - 252
Target Start/End: Complemental strand, 46374897 - 46374860
Alignment:
Q  215 atgatacatagacatccttaggtggcaatacacccttt 252  Q
    |||||||||||||||||||||||||||| |||||||||    
T  46374897 atgatacatagacatccttaggtggcaacacacccttt 46374860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 213 - 253
Target Start/End: Original strand, 7389392 - 7389432
Alignment:
Q  213 taatgatacatagacatccttaggtggcaatacaccctttg 253  Q
    |||||||||||||||| |||||||||||||||||| |||||    
T  7389392 taatgatacatagacacccttaggtggcaatacactctttg 7389432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 213 - 253
Target Start/End: Original strand, 11044191 - 11044231
Alignment:
Q  213 taatgatacatagacatccttaggtggcaatacaccctttg 253  Q
    |||||||||||||||| ||||||||||||||||| ||||||    
T  11044191 taatgatacatagacacccttaggtggcaatacatcctttg 11044231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 213 - 253
Target Start/End: Complemental strand, 19436284 - 19436244
Alignment:
Q  213 taatgatacatagacatccttaggtggcaatacaccctttg 253  Q
    |||||||||||||||||||||||||| ||||||||| ||||    
T  19436284 taatgatacatagacatccttaggtgacaatacaccttttg 19436244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 213 - 253
Target Start/End: Original strand, 35137536 - 35137576
Alignment:
Q  213 taatgatacatagacatccttaggtggcaatacaccctttg 253  Q
    |||||||| ||||||| ||||||||||||||||||||||||    
T  35137536 taatgataaatagacacccttaggtggcaatacaccctttg 35137576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 211 - 246
Target Start/End: Original strand, 3783996 - 3784031
Alignment:
Q  211 aataatgatacatagacatccttaggtggcaataca 246  Q
    |||||||||||||||||| |||||||||||||||||    
T  3783996 aataatgatacatagacacccttaggtggcaataca 3784031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 252
Target Start/End: Original strand, 26296636 - 26296686
Alignment:
Q  202 aaaaaatagaataatgatacatagacatccttaggtggcaatacacccttt 252  Q
    |||| ||||| | |||||||||||||||||||||||| ||||| |||||||    
T  26296636 aaaagatagagttatgatacatagacatccttaggtgacaatatacccttt 26296686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 246
Target Start/End: Complemental strand, 35468961 - 35468919
Alignment:
Q  204 aaaatagaataatgatacatagacatccttaggtggcaataca 246  Q
    |||| ||| ||||||||||||||||||||||| ||||||||||    
T  35468961 aaaaaagagtaatgatacatagacatccttagatggcaataca 35468919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 253
Target Start/End: Original strand, 36362023 - 36362069
Alignment:
Q  207 atagaataatgatacatagacatccttaggtggcaatacaccctttg 253  Q
    ||||| |||||||||||||||| |||||||||| |||||| ||||||    
T  36362023 atagagtaatgatacatagacacccttaggtggtaatacatcctttg 36362069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 249
Target Start/End: Complemental strand, 40846208 - 40846174
Alignment:
Q  215 atgatacatagacatccttaggtggcaatacaccc 249  Q
    |||||||||| ||||||||||||||||||||||||    
T  40846208 atgatacataaacatccttaggtggcaatacaccc 40846174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 215 - 248
Target Start/End: Original strand, 18207185 - 18207218
Alignment:
Q  215 atgatacatagacatccttaggtggcaatacacc 248  Q
    |||||||||||||| |||||||||||||||||||    
T  18207185 atgatacatagacaaccttaggtggcaatacacc 18207218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 215 - 248
Target Start/End: Original strand, 35522881 - 35522914
Alignment:
Q  215 atgatacatagacatccttaggtggcaatacacc 248  Q
    |||||||||||||||||||| |||||||||||||    
T  35522881 atgatacatagacatccttaagtggcaatacacc 35522914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 215 - 248
Target Start/End: Complemental strand, 39256018 - 39255985
Alignment:
Q  215 atgatacatagacatccttaggtggcaatacacc 248  Q
    |||||||||||||| |||||||||||||||||||    
T  39256018 atgatacatagacaaccttaggtggcaatacacc 39255985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 215 - 252
Target Start/End: Complemental strand, 46033896 - 46033859
Alignment:
Q  215 atgatacatagacatccttaggtggcaatacacccttt 252  Q
    |||||||||||| || ||||||||||||||||||||||    
T  46033896 atgatacatagatattcttaggtggcaatacacccttt 46033859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 213 - 253
Target Start/End: Complemental strand, 4999611 - 4999571
Alignment:
Q  213 taatgatacatagacatccttaggtggcaatacaccctttg 253  Q
    |||||||||||||||| |||||| |||||||||||| ||||    
T  4999611 taatgatacatagacacccttagatggcaatacaccttttg 4999571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 166
Target Start/End: Complemental strand, 21774131 - 21774055
Alignment:
Q  91 ttgtgaaattaccaaattaccctgccactagggtgtgtataaaagtggtat-ggaaaagggtgtttatgaataattt 166  Q
    |||||||| ||||||| | |||| | | | ||||||||| ||||||||||| ||| |||||||||||||||| ||||    
T  21774131 ttgtgaaaataccaaaatgcccttctaatggggtgtgtacaaaagtggtatgggacaagggtgtttatgaatcattt 21774055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 213 - 253
Target Start/End: Original strand, 38267043 - 38267083
Alignment:
Q  213 taatgatacatagacatccttaggtggcaatacaccctttg 253  Q
    |||||||||||||||| ||||| ||| ||||||||||||||    
T  38267043 taatgatacatagacacccttatgtgacaatacaccctttg 38267083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 213 - 253
Target Start/End: Original strand, 40957710 - 40957750
Alignment:
Q  213 taatgatacatagacatccttaggtggcaatacaccctttg 253  Q
    ||||||||||||||||  ||||||||||||||||| |||||    
T  40957710 taatgatacatagacactcttaggtggcaatacactctttg 40957750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 246
Target Start/End: Original strand, 45223034 - 45223078
Alignment:
Q  202 aaaaaatagaataatgatacatagacatccttaggtggcaataca 246  Q
    |||||| ||| |||||||| ||| |||||||||||||||||||||    
T  45223034 aaaaaaaagagtaatgatatatatacatccttaggtggcaataca 45223078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 147
Target Start/End: Original strand, 49101323 - 49101379
Alignment:
Q  92 tgtgaaattaccaaattaccctgccac-tagggtgtgtataaaagtggtatggaaaa 147  Q
    ||||||||||||||| |||||| |||| |||| ||||||||  ||||||||||||||    
T  49101323 tgtgaaattaccaaaataccctaccacataggatgtgtatatgagtggtatggaaaa 49101379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 203 - 253
Target Start/End: Complemental strand, 18520991 - 18520941
Alignment:
Q  203 aaaaatagaataatgatacatagacatccttaggtggcaatacaccctttg 253  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  18520991 aaaaaaagaataatgatacatagacacccttaggtggcaatacaccctttg 18520941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 208 - 253
Target Start/End: Original strand, 2740272 - 2740317
Alignment:
Q  208 tagaataatgatacatagacatccttaggtggcaatacaccctttg 253  Q
    |||| |||||||||||||||||||||||||||||||||||||||||    
T  2740272 tagagtaatgatacatagacatccttaggtggcaatacaccctttg 2740317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 215 - 253
Target Start/End: Original strand, 28177780 - 28177818
Alignment:
Q  215 atgatacatagacatccttaggtggcaatacaccctttg 253  Q
    |||||||||||||||||||||||||||||||||||||||    
T  28177780 atgatacatagacatccttaggtggcaatacaccctttg 28177818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 215 - 252
Target Start/End: Original strand, 26720521 - 26720558
Alignment:
Q  215 atgatacatagacatccttaggtggcaatacacccttt 252  Q
    ||||||||||||||||||||||||||||||||||||||    
T  26720521 atgatacatagacatccttaggtggcaatacacccttt 26720558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 215 - 252
Target Start/End: Original strand, 26990270 - 26990307
Alignment:
Q  215 atgatacatagacatccttaggtggcaatacacccttt 252  Q
    ||||||||||||||||||||||||||||||||||||||    
T  26990270 atgatacatagacatccttaggtggcaatacacccttt 26990307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 213 - 253
Target Start/End: Complemental strand, 36875700 - 36875660
Alignment:
Q  213 taatgatacatagacatccttaggtggcaatacaccctttg 253  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  36875700 taatgatacatagacacccttaggtggcaatacaccctttg 36875660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 213 - 252
Target Start/End: Original strand, 40145410 - 40145449
Alignment:
Q  213 taatgatacatagacatccttaggtggcaatacacccttt 252  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  40145410 taatgatacatagacacccttaggtggcaatacacccttt 40145449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 213 - 253
Target Start/End: Original strand, 14831817 - 14831857
Alignment:
Q  213 taatgatacatagacatccttaggtggcaatacaccctttg 253  Q
    ||||||||||||||||  |||||||||||||||||||||||    
T  14831817 taatgatacatagacactcttaggtggcaatacaccctttg 14831857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 213 - 253
Target Start/End: Complemental strand, 33149735 - 33149695
Alignment:
Q  213 taatgatacatagacatccttaggtggcaatacaccctttg 253  Q
    |||||||||||||||| |||||||||| |||||||||||||    
T  33149735 taatgatacatagacacccttaggtggtaatacaccctttg 33149695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 213 - 253
Target Start/End: Original strand, 35785202 - 35785242
Alignment:
Q  213 taatgatacatagacatccttaggtggcaatacaccctttg 253  Q
    |||||||||||||||| ||||||||||||||||||| ||||    
T  35785202 taatgatacatagacacccttaggtggcaatacaccttttg 35785242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 213 - 253
Target Start/End: Complemental strand, 36733039 - 36732999
Alignment:
Q  213 taatgatacatagacatccttaggtggcaatacaccctttg 253  Q
    |||||||||||||||| |||||||| |||||||||||||||    
T  36733039 taatgatacatagacacccttaggtagcaatacaccctttg 36732999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 215 - 246
Target Start/End: Original strand, 10356639 - 10356670
Alignment:
Q  215 atgatacatagacatccttaggtggcaataca 246  Q
    ||||||||||||||||||||||||||||||||    
T  10356639 atgatacatagacatccttaggtggcaataca 10356670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 210 - 249
Target Start/End: Original strand, 21370014 - 21370053
Alignment:
Q  210 gaataatgatacatagacatccttaggtggcaatacaccc 249  Q
    |||| ||||||||||||||||||||||||| |||||||||    
T  21370014 gaattatgatacatagacatccttaggtggtaatacaccc 21370053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 249
Target Start/End: Complemental strand, 2252263 - 2252229
Alignment:
Q  215 atgatacatagacatccttaggtggcaatacaccc 249  Q
    |||||||||| ||||||||||||||||||||||||    
T  2252263 atgatacataaacatccttaggtggcaatacaccc 2252229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 253
Target Start/End: Original strand, 6679703 - 6679741
Alignment:
Q  215 atgatacatagacatccttaggtggcaatacaccctttg 253  Q
    |||||||||||||||| ||||||||||||||||| ||||    
T  6679703 atgatacatagacatctttaggtggcaatacaccttttg 6679741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 166
Target Start/End: Complemental strand, 11777492 - 11777416
Alignment:
Q  91 ttgtgaaattaccaaattaccctgccactagggtgtgtataaaagtggtatg-gaaaagggtgtttatgaataattt 166  Q
    ||||||||| |||||| | |||||| | | ||||||||| |||||||||||| || |||||||| ||||||| ||||    
T  11777492 ttgtgaaatgaccaaaatgccctgctaatggggtgtgtacaaaagtggtatgagacaagggtgtctatgaatcattt 11777416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 213 - 253
Target Start/End: Complemental strand, 42414399 - 42414359
Alignment:
Q  213 taatgatacatagacatccttaggtggcaatacaccctttg 253  Q
    |||||||||||||||| |  |||||||||||||||||||||    
T  42414399 taatgatacatagacaccagtaggtggcaatacaccctttg 42414359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 215 - 253
Target Start/End: Complemental strand, 31110854 - 31110816
Alignment:
Q  215 atgatacatagacatccttaggtggcaatacaccctttg 253  Q
    |||||||||||||||||||||||||||||||||||||||    
T  31110854 atgatacatagacatccttaggtggcaatacaccctttg 31110816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 212 - 253
Target Start/End: Complemental strand, 22880756 - 22880715
Alignment:
Q  212 ataatgatacatagacatccttaggtggcaatacaccctttg 253  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  22880756 ataatgatacatagacacccttaggtggcaatacaccctttg 22880715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 206 - 252
Target Start/End: Original strand, 31976244 - 31976290
Alignment:
Q  206 aatagaataatgatacatagacatccttaggtggcaatacacccttt 252  Q
    |||||| | |||||||||||||||||||||||||||||| |||||||    
T  31976244 aatagagttatgatacatagacatccttaggtggcaatatacccttt 31976290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 207 - 244
Target Start/End: Complemental strand, 22422121 - 22422084
Alignment:
Q  207 atagaataatgatacatagacatccttaggtggcaata 244  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  22422121 atagagtaatgatacatagacatccttaggtggcaata 22422084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 213 - 249
Target Start/End: Complemental strand, 31953127 - 31953091
Alignment:
Q  213 taatgatacatagacatccttaggtggcaatacaccc 249  Q
    |||||||| ||||||||||||||||||||||||||||    
T  31953127 taatgatagatagacatccttaggtggcaatacaccc 31953091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 217 - 253
Target Start/End: Original strand, 32869685 - 32869721
Alignment:
Q  217 gatacatagacatccttaggtggcaatacaccctttg 253  Q
    |||||||||||| ||||||||||||||||||||||||    
T  32869685 gatacatagacacccttaggtggcaatacaccctttg 32869721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 213 - 247
Target Start/End: Complemental strand, 6209562 - 6209528
Alignment:
Q  213 taatgatacatagacatccttaggtggcaatacac 247  Q
    |||||||||||||||| ||||||||||||||||||    
T  6209562 taatgatacatagacacccttaggtggcaatacac 6209528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 213 - 246
Target Start/End: Original strand, 17598557 - 17598590
Alignment:
Q  213 taatgatacatagacatccttaggtggcaataca 246  Q
    |||||||||||||||| |||||||||||||||||    
T  17598557 taatgatacatagacacccttaggtggcaataca 17598590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 209 - 246
Target Start/End: Complemental strand, 28536587 - 28536550
Alignment:
Q  209 agaataatgatacatagacatccttaggtggcaataca 246  Q
    |||| ||||||||||| |||||||||||||||||||||    
T  28536587 agaaaaatgatacataaacatccttaggtggcaataca 28536550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 217 - 253
Target Start/End: Original strand, 946383 - 946419
Alignment:
Q  217 gatacatagacatccttaggtggcaatacaccctttg 253  Q
    ||||||||||||||||||||||  |||||||||||||    
T  946383 gatacatagacatccttaggtgataatacaccctttg 946419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 213 - 253
Target Start/End: Complemental strand, 31109497 - 31109457
Alignment:
Q  213 taatgatacatagacatccttaggtggcaatacaccctttg 253  Q
    |||||||  ||||||| ||||||||||||||||||||||||    
T  31109497 taatgattaatagacacccttaggtggcaatacaccctttg 31109457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 215 - 252
Target Start/End: Complemental strand, 26141627 - 26141590
Alignment:
Q  215 atgatacatagacatccttaggtggcaatacacccttt 252  Q
    ||||||||||||||||||||||||||||||||||||||    
T  26141627 atgatacatagacatccttaggtggcaatacacccttt 26141590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 205 - 253
Target Start/End: Original strand, 8956757 - 8956805
Alignment:
Q  205 aaatagaataatgatacatagacatccttaggtggcaatacaccctttg 253  Q
    ||||||| |||||||||||||||||||||| ||||||||||| ||||||    
T  8956757 aaatagagtaatgatacatagacatccttatgtggcaatacatcctttg 8956805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 213 - 253
Target Start/End: Complemental strand, 11095450 - 11095410
Alignment:
Q  213 taatgatacatagacatccttaggtggcaatacaccctttg 253  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  11095450 taatgatacatagacacccttaggtggcaatacaccctttg 11095410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 213 - 249
Target Start/End: Complemental strand, 14623936 - 14623900
Alignment:
Q  213 taatgatacatagacatccttaggtggcaatacaccc 249  Q
    |||||||||||||||||||||||||||||||||||||    
T  14623936 taatgatacatagacatccttaggtggcaatacaccc 14623900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 213 - 253
Target Start/End: Original strand, 49607417 - 49607457
Alignment:
Q  213 taatgatacatagacatccttaggtggcaatacaccctttg 253  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  49607417 taatgatacatagacacccttaggtggcaatacaccctttg 49607457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 213 - 253
Target Start/End: Original strand, 53982014 - 53982054
Alignment:
Q  213 taatgatacatagacatccttaggtggcaatacaccctttg 253  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  53982014 taatgatacatagacacccttaggtggcaatacaccctttg 53982054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 215 - 253
Target Start/End: Original strand, 52629305 - 52629343
Alignment:
Q  215 atgatacatagacatccttaggtggcaatacaccctttg 253  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  52629305 atgatacatagacacccttaggtggcaatacaccctttg 52629343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 208 - 253
Target Start/End: Complemental strand, 24700056 - 24700011
Alignment:
Q  208 tagaataatgatacatagacatccttaggtggcaatacaccctttg 253  Q
    |||| ||||||||||||||||||||||| |||||||||||| ||||    
T  24700056 tagagtaatgatacatagacatccttagttggcaatacaccttttg 24700011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 208 - 253
Target Start/End: Original strand, 35536624 - 35536669
Alignment:
Q  208 tagaataatgatacatagacatccttaggtggcaatacaccctttg 253  Q
    |||| |||||||||||||||||||||| ||||||||||||| ||||    
T  35536624 tagagtaatgatacatagacatccttatgtggcaatacaccatttg 35536669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 213 - 253
Target Start/End: Original strand, 33644203 - 33644243
Alignment:
Q  213 taatgatacatagacatccttaggtggcaatacaccctttg 253  Q
    |||||||||||||||| |||| |||||||||||||||||||    
T  33644203 taatgatacatagacacccttgggtggcaatacaccctttg 33644243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 213 - 253
Target Start/End: Complemental strand, 54868992 - 54868952
Alignment:
Q  213 taatgatacatagacatccttaggtggcaatacaccctttg 253  Q
    |||||||||||||||| ||||||||||||||||||| ||||    
T  54868992 taatgatacatagacacccttaggtggcaatacaccttttg 54868952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 203 - 246
Target Start/End: Complemental strand, 21746290 - 21746247
Alignment:
Q  203 aaaaatagaataatgatacatagacatccttaggtggcaataca 246  Q
    |||| |||| |||||||||||| |||||||||||||||||||||    
T  21746290 aaaattagagtaatgatacatatacatccttaggtggcaataca 21746247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 96 - 169
Target Start/End: Original strand, 47595056 - 47595131
Alignment:
Q  96 aaattaccaaattaccctgccactaggg-tgtgtataaaagtggtat-ggaaaagggtgtttatgaataatttctc 169  Q
    ||||||||||| ||| |||||||  ||| |||||||||||||||||| ||||| |||||| ||||||| |||||||    
T  47595056 aaattaccaaaatactctgccacatgggatgtgtataaaagtggtatgggaaaggggtgtctatgaattatttctc 47595131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 214 - 253
Target Start/End: Complemental strand, 48587187 - 48587148
Alignment:
Q  214 aatgatacatagacatccttaggtggcaatacaccctttg 253  Q
    ||||||||||||| | ||||||||||||||||||||||||    
T  48587187 aatgatacatagatacccttaggtggcaatacaccctttg 48587148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 253
Target Start/End: Complemental strand, 11348017 - 11347979
Alignment:
Q  215 atgatacatagacatccttaggtggcaatacaccctttg 253  Q
    |||||||||||||||||||||||| ||||||| ||||||    
T  11348017 atgatacatagacatccttaggtgacaatacatcctttg 11347979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 253
Target Start/End: Complemental strand, 33118946 - 33118908
Alignment:
Q  215 atgatacatagacatccttaggtggcaatacaccctttg 253  Q
    |||||||||||||| ||||||||| ||||||||||||||    
T  33118946 atgatacatagacacccttaggtgacaatacaccctttg 33118908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 215 - 248
Target Start/End: Original strand, 47531870 - 47531903
Alignment:
Q  215 atgatacatagacatccttaggtggcaatacacc 248  Q
    ||||||||||||||||||||| ||||||||||||    
T  47531870 atgatacatagacatccttagatggcaatacacc 47531903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 213 - 253
Target Start/End: Original strand, 8076396 - 8076436
Alignment:
Q  213 taatgatacatagacatccttaggtggcaatacaccctttg 253  Q
    |||||||||||| ||| |||||||||||| |||||||||||    
T  8076396 taatgatacataaacacccttaggtggcagtacaccctttg 8076436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 213 - 249
Target Start/End: Complemental strand, 13898152 - 13898116
Alignment:
Q  213 taatgatacatagacatccttaggtggcaatacaccc 249  Q
    |||||||| ||| ||||||||||||||||||||||||    
T  13898152 taatgatagataaacatccttaggtggcaatacaccc 13898116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 248
Target Start/End: Original strand, 17470403 - 17470443
Alignment:
Q  208 tagaataatgatacatagacatccttaggtggcaatacacc 248  Q
    |||| |||||||||||||||| | |||||||||||||||||    
T  17470403 tagagtaatgatacatagacacctttaggtggcaatacacc 17470443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 215 - 251
Target Start/End: Original strand, 26754700 - 26754736
Alignment:
Q  215 atgatacatagacatccttaggtggcaatacaccctt 251  Q
    ||||| |||||||| ||||||||||||||||||||||    
T  26754700 atgattcatagacacccttaggtggcaatacaccctt 26754736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 213 - 253
Target Start/End: Complemental strand, 27714988 - 27714948
Alignment:
Q  213 taatgatacatagacatccttaggtggcaatacaccctttg 253  Q
    |||||||||||||||| | |||||||| |||||||||||||    
T  27714988 taatgatacatagacacctttaggtggtaatacaccctttg 27714948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 213 - 253
Target Start/End: Original strand, 31456692 - 31456732
Alignment:
Q  213 taatgatacatagacatccttaggtggcaatacaccctttg 253  Q
    |||||||||||||||| || |||| ||||||||||||||||    
T  31456692 taatgatacatagacacccataggcggcaatacaccctttg 31456732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 213 - 253
Target Start/End: Complemental strand, 36707521 - 36707481
Alignment:
Q  213 taatgatacatagacatccttaggtggcaatacaccctttg 253  Q
    |||||||||||||| | ||||||||| ||||||||||||||    
T  36707521 taatgatacatagatacccttaggtgacaatacaccctttg 36707481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 215 - 251
Target Start/End: Complemental strand, 45058647 - 45058611
Alignment:
Q  215 atgatacatagacatccttaggtggcaatacaccctt 251  Q
    |||||||||| ||| ||||||||||||||||||||||    
T  45058647 atgatacataaacacccttaggtggcaatacaccctt 45058611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 215 - 252
Target Start/End: Original strand, 32813252 - 32813289
Alignment:
Q  215 atgatacatagacatccttaggtggcaatacacccttt 252  Q
    ||||||||||||||||||||||||||||||||||||||    
T  32813252 atgatacatagacatccttaggtggcaatacacccttt 32813289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 208 - 253
Target Start/End: Complemental strand, 51898785 - 51898740
Alignment:
Q  208 tagaataatgatacatagacatccttaggtggcaatacaccctttg 253  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||    
T  51898785 tagagtaatgatacatagacatctttaggtggcaatacaccctttg 51898740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 213 - 253
Target Start/End: Original strand, 2581918 - 2581958
Alignment:
Q  213 taatgatacatagacatccttaggtggcaatacaccctttg 253  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  2581918 taatgatacatagacacccttaggtggcaatacaccctttg 2581958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 213 - 253
Target Start/End: Complemental strand, 9474973 - 9474933
Alignment:
Q  213 taatgatacatagacatccttaggtggcaatacaccctttg 253  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  9474973 taatgatacatagacacccttaggtggcaatacaccctttg 9474933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 213 - 253
Target Start/End: Complemental strand, 27564832 - 27564792
Alignment:
Q  213 taatgatacatagacatccttaggtggcaatacaccctttg 253  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  27564832 taatgatacatagacatccttaggtggcaatacaccttttg 27564792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 213 - 253
Target Start/End: Original strand, 3000322 - 3000362
Alignment:
Q  213 taatgatacatagacatccttaggtggcaatacaccctttg 253  Q
    |||||||||||| ||| ||||||||||||||||||||||||    
T  3000322 taatgatacataaacacccttaggtggcaatacaccctttg 3000362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 213 - 253
Target Start/End: Complemental strand, 23597188 - 23597148
Alignment:
Q  213 taatgatacatagacatccttaggtggcaatacaccctttg 253  Q
    |||||||||||||||||| |||||||||||||||| |||||    
T  23597188 taatgatacatagacatcattaggtggcaatacactctttg 23597148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 213 - 253
Target Start/End: Original strand, 37649201 - 37649241
Alignment:
Q  213 taatgatacatagacatccttaggtggcaatacaccctttg 253  Q
    |||||||||||||||||| |||||||||||||||| |||||    
T  37649201 taatgatacatagacatctttaggtggcaatacactctttg 37649241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 213 - 253
Target Start/End: Complemental strand, 44548473 - 44548433
Alignment:
Q  213 taatgatacatagacatccttaggtggcaatacaccctttg 253  Q
    |||||||||||||||||| ||||||||||||||||| ||||    
T  44548473 taatgatacatagacatctttaggtggcaatacaccatttg 44548433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 213 - 253
Target Start/End: Complemental strand, 47452417 - 47452377
Alignment:
Q  213 taatgatacatagacatccttaggtggcaatacaccctttg 253  Q
    |||||||||||||||| |||||||||| |||||||||||||    
T  47452417 taatgatacatagacacccttaggtggtaatacaccctttg 47452377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 213 - 253
Target Start/End: Complemental strand, 48716379 - 48716339
Alignment:
Q  213 taatgatacatagacatccttaggtggcaatacaccctttg 253  Q
    |||||||||||||||| ||||||||||||||||||| ||||    
T  48716379 taatgatacatagacacccttaggtggcaatacaccatttg 48716339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 213 - 248
Target Start/End: Complemental strand, 38632418 - 38632383
Alignment:
Q  213 taatgatacatagacatccttaggtggcaatacacc 248  Q
    |||||||||||||||| |||||||||||||||||||    
T  38632418 taatgatacatagacacccttaggtggcaatacacc 38632383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 249
Target Start/End: Complemental strand, 41608588 - 41608554
Alignment:
Q  215 atgatacatagacatccttaggtggcaatacaccc 249  Q
    |||||||||| ||||||||||||||||||||||||    
T  41608588 atgatacataaacatccttaggtggcaatacaccc 41608554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 209 - 246
Target Start/End: Original strand, 26274431 - 26274468
Alignment:
Q  209 agaataatgatacatagacatccttaggtggcaataca 246  Q
    |||||||||||||||||||| ||||| |||||||||||    
T  26274431 agaataatgatacatagacacccttatgtggcaataca 26274468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 208 - 253
Target Start/End: Original strand, 50630456 - 50630501
Alignment:
Q  208 tagaataatgatacatagacatccttaggtggcaatacaccctttg 253  Q
    |||| |||||||||||||| | ||||||||||||||||| ||||||    
T  50630456 tagagtaatgatacatagatacccttaggtggcaatacatcctttg 50630501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 213 - 253
Target Start/End: Original strand, 38595157 - 38595197
Alignment:
Q  213 taatgatacatagacatccttaggtggcaatacaccctttg 253  Q
    |||||||||||| ||| | ||||||||||||||||||||||    
T  38595157 taatgatacataaacacctttaggtggcaatacaccctttg 38595197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1268 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold1268
Description:

Target: scaffold1268; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 213 - 252
Target Start/End: Complemental strand, 1026 - 987
Alignment:
Q  213 taatgatacatagacatccttaggtggcaatacacccttt 252  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  1026 taatgatacatagacatctttaggtggcaatacacccttt 987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1267 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold1267
Description:

Target: scaffold1267; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 213 - 252
Target Start/End: Complemental strand, 1026 - 987
Alignment:
Q  213 taatgatacatagacatccttaggtggcaatacacccttt 252  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  1026 taatgatacatagacatctttaggtggcaatacacccttt 987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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