View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4017_high_43 (Length: 243)
Name: NF4017_high_43
Description: NF4017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4017_high_43 |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 44583169 - 44583398
Alignment:
| Q |
1 |
ttgatggtgattgggccacttttttgttgcgacatttcgtagtctaatctaattaacatatctaactcaaagcaatgtcaccttcatgtttctgtttgtt |
100 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44583169 |
ttgatggtgattgggccacctttttgttgcgacatttcgtagtctaatctaattaacatatctaactcaaagcaatgtcaccttcatgtttctgtttgtt |
44583268 |
T |
|
| Q |
101 |
ttgattaattaatgattaatgtattcattctcccatataatttgaagcgtccttttctgacaatacaatattataaatttgctcataagtcctctcgtca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44583269 |
ttgattaattaatgattaatgtattcattctcccatataatttgaagcgtccttttctgacaatacaatattataaatttgctcataagtcctctcgtca |
44583368 |
T |
|
| Q |
201 |
atccaat-ggagtacgctcttgatgtgtgt |
229 |
Q |
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||||||| |||||| ||||||||||||||| |
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| T |
44583369 |
atccaatgggagtatgctcttgatgtgtgt |
44583398 |
T |
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