View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4017_high_44 (Length: 242)

Name: NF4017_high_44
Description: NF4017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4017_high_44
NF4017_high_44
[»] chr3 (21 HSPs)
chr3 (1-240)||(26205761-26206000)
chr3 (1-240)||(26111477-26111727)
chr3 (14-240)||(26233806-26234041)
chr3 (92-158)||(26128821-26128887)
chr3 (100-167)||(26114056-26114123)
chr3 (15-73)||(26178722-26178780)
chr3 (15-73)||(26128672-26128731)
chr3 (100-159)||(17745331-17745390)
chr3 (100-159)||(19046651-19046710)
chr3 (92-146)||(26178888-26178943)
chr3 (100-181)||(26128554-26128636)
chr3 (100-181)||(26178604-26178686)
chr3 (111-167)||(28151128-28151184)
chr3 (100-159)||(27919529-27919588)
chr3 (100-167)||(28003375-28003442)
chr3 (100-165)||(26202505-26202573)
chr3 (18-64)||(27459805-27459851)
chr3 (14-71)||(28134726-28134783)
chr3 (37-73)||(26114159-26114195)
chr3 (92-152)||(27459741-27459801)
chr3 (15-71)||(28184891-28184947)


Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 26206000 - 26205761
Alignment:
Q  1 ttattcaatggtctaagatcactaatgcatctgttcttattacaggagttattgaatgaacaattaatggatcgacggttcttattacagacacttgcgg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||    
T  26206000 ttattcaatggtctaagatcactaatgcatctgttcttattacaggagttattgaatgaacaattaatggatcgacagttcttattacagacacttgtgg 26205901  T
Q  101 aaactgatattaccatcaaaccttctcaggaagaaaatgtaatatagtaccatctcattatgcatatcaacttttgtgaattcaattataaaatgctgtg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26205900 aaactgatattaccatcaaaccttctcaggaagaaaatgtaatatagtaccatctcattatgcatatcaacttttgtgaattcaattataaaatgctgtg 26205801  T
Q  201 atttcgaaagatgatgaaaaactgcttccaatcacctatg 240  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  26205800 atttcgaaagatgatgaaaaactgcttccaatcacctatg 26205761  T

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Target: chr3; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 26111727 - 26111477
Alignment:
Q  1 ttattcaatggtcta--agatcactaatgcatctgttcttattacaggagttattgaatgaacaattaatggatcgacggttcttatt---------aca 89  Q
    |||||||||||||||  |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| || |||  |         |||    
T  26111727 ttattcaatggtctataagatcactaatgcatctgttcttattacaggagttaatgactgaacaattaatggatcgacagtgcttgatgaaccaacaaca 26111628  T
Q  90 gacacttgcggaaactgatattaccatcaaaccttctcaggaagaaaatgtaatatagtaccatctcattatgcatatcaacttttgtgaattcaattat 189  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26111627 gacacttgcggaaactgatattaccatcaaaccttctcaggaagaaaatgtaatatagtaccatctcattatgcatatcaacttttgtgaattcaattat 26111528  T
Q  190 aaaatgctgtgatttcgaaagatgatgaaaaactgcttccaatcacctatg 240  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  26111527 aaagtgctgtgatttcgaaagatgatgaaaaactgcttccaatcacctatg 26111477  T

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Target: chr3; HSP #3
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 14 - 240
Target Start/End: Complemental strand, 26234041 - 26233806
Alignment:
Q  14 taagatcactaatgcatctgttcttattacaggagttattgaatgaacaattaatggatcgacggttcttatt---------acagacacttgcggaaac 104  Q
    |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| || |||  |         ||||||||||||||||||    
T  26234041 taagatcattaatgcatctgttcttattacaggagttattcaatgaacaattaatggatcgacagtgcttgatcaaccaacaacagacacttgcggaaac 26233942  T
Q  105 tgatattaccatcaaaccttctcaggaagaaaatgtaatatagtaccatctcattatgcatatcaacttttgtgaattcaattataaaatgctgtgattt 204  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  26233941 taatattaccatcaaaccttctcaggaagaaaatgtaatatagtaccatctcattatgcatatcaacttttgtgaattcaattataacatgctgtgattt 26233842  T
Q  205 cgaaagatgatgaaaaactgcttccaatcacctatg 240  Q
    ||||| ||||||||||||||||||||||||||||||    
T  26233841 cgaaatatgatgaaaaactgcttccaatcacctatg 26233806  T

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Target: chr3; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 92 - 158
Target Start/End: Complemental strand, 26128887 - 26128821
Alignment:
Q  92 cacttgcggaaactgatattaccatcaaaccttctcaggaagaaaatgtaatatagtaccatctcat 158  Q
    |||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||    
T  26128887 cacttgcggaaactgatactaccatcaaaccttctcaggaagataatgtaatatagtaccatctcat 26128821  T

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Target: chr3; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 100 - 167
Target Start/End: Complemental strand, 26114123 - 26114056
Alignment:
Q  100 gaaactgatattaccatcaaaccttctcaggaagaaaatgtaatatagtaccatctcattatgcatat 167  Q
    |||||||||| |||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||    
T  26114123 gaaactgatactaccatcaaaccttctcaagaagataatgtaatatagtaccatctcattgtgcatat 26114056  T

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Target: chr3; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 15 - 73
Target Start/End: Complemental strand, 26178780 - 26178722
Alignment:
Q  15 aagatcactaatgcatctgttcttattacaggagttattgaatgaacaattaatggatc 73  Q
    |||||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||    
T  26178780 aagatcactaatgcatctattcttgttacaggagttaatgaatgaacaattaatggatc 26178722  T

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Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 15 - 73
Target Start/End: Complemental strand, 26128731 - 26128672
Alignment:
Q  15 aagatcactaatgcatctgttcttattacaggagttattgaatgaa-caattaatggatc 73  Q
    |||||||||||||||||| ||||| |||||||||||| |||||||| |||||||||||||    
T  26128731 aagatcactaatgcatctattcttgttacaggagttaatgaatgaaccaattaatggatc 26128672  T

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Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 159
Target Start/End: Complemental strand, 17745390 - 17745331
Alignment:
Q  100 gaaactgatattaccatcaaaccttctcaggaagaaaatgtaatatagtaccatctcatt 159  Q
    |||||||||  |||| ||||||||||||||||| | ||||||||||||||||| ||||||    
T  17745390 gaaactgatgctaccgtcaaaccttctcaggaaaataatgtaatatagtaccacctcatt 17745331  T

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Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 159
Target Start/End: Complemental strand, 19046710 - 19046651
Alignment:
Q  100 gaaactgatattaccatcaaaccttctcaggaagaaaatgtaatatagtaccatctcatt 159  Q
    |||||||||  |||| ||||||||||||||||| | ||||||||||||||||| ||||||    
T  19046710 gaaactgatgctaccgtcaaaccttctcaggaaaataatgtaatatagtaccacctcatt 19046651  T

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Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 146
Target Start/End: Complemental strand, 26178943 - 26178888
Alignment:
Q  92 cacttgcggaaactgatattaccatcaaacc-ttctcaggaagaaaatgtaatata 146  Q
    |||||||||||||||||| |||||||||||| |||| ||||||| |||||||||||    
T  26178943 cacttgcggaaactgatactaccatcaaacctttcttaggaagataatgtaatata 26178888  T

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Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 100 - 181
Target Start/End: Complemental strand, 26128636 - 26128554
Alignment:
Q  100 gaaactgatattaccatcaaaccttctcaggaagaaaatgt-aatatagtaccatctcattatgcatatcaacttttgtgaat 181  Q
    |||||||||| ||||||||||| |||||||||| | ||||| |||||||||  |||||||| ||||||| || | ||||||||    
T  26128636 gaaactgatactaccatcaaacattctcaggaatataatgtaaatatagtattatctcattgtgcatatgaagtgttgtgaat 26128554  T

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Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 100 - 181
Target Start/End: Complemental strand, 26178686 - 26178604
Alignment:
Q  100 gaaactgatattaccatcaaaccttctcaggaagaaaatgt-aatatagtaccatctcattatgcatatcaacttttgtgaat 181  Q
    |||||||||| ||||||||||| |||||||||| | ||||| |||||||||  |||||||| ||||||| || | ||||||||    
T  26178686 gaaactgatactaccatcaaacattctcaggaatataatgtaaatatagtattatctcattgtgcatatgaagtgttgtgaat 26178604  T

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Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 167
Target Start/End: Original strand, 28151128 - 28151184
Alignment:
Q  111 taccatcaaaccttctcaggaagaaaatgtaatatagtaccatctcattatgcatat 167  Q
    |||| ||||||||||||| ||| | ||||||||||||||||| |||||| |||||||    
T  28151128 taccgtcaaaccttctcaagaaaataatgtaatatagtaccacctcattgtgcatat 28151184  T

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Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 100 - 159
Target Start/End: Original strand, 27919529 - 27919588
Alignment:
Q  100 gaaactgatattaccatcaaaccttctcaggaagaaaatgtaatatagtaccatctcatt 159  Q
    |||| ||||| |||| ||||||||||||| ||| | ||||||||||||||||| ||||||    
T  27919529 gaaattgatactaccgtcaaaccttctcaagaaaataatgtaatatagtaccacctcatt 27919588  T

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Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 100 - 167
Target Start/End: Original strand, 28003375 - 28003442
Alignment:
Q  100 gaaactgatattaccatcaaaccttctcaggaagaaaatgtaatatagtaccatctcattatgcatat 167  Q
    |||||||||  |||| ||||||||||||| ||| | ||||||||||||||||| |||||  |||||||    
T  28003375 gaaactgatgctaccgtcaaaccttctcaagaaaataatgtaatatagtaccacctcatcgtgcatat 28003442  T

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Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 165
Target Start/End: Complemental strand, 26202573 - 26202505
Alignment:
Q  100 gaaactgatattaccatcaaaccttctcaggaagaaaatg---taatatagtaccatctcattatgcat 165  Q
    |||||||||| |||||||||||||||||| ||| | ||||   ||||||||||| |||||||| |||||    
T  26202573 gaaactgatactaccatcaaaccttctcaagaatataatgtaataatatagtacaatctcattgtgcat 26202505  T

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Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 27459851 - 27459805
Alignment:
Q  18 atcactaatgcatctgttcttattacaggagttattgaatgaacaat 64  Q
    ||||||||| | | |||||||||||||||||||| ||||||||||||    
T  27459851 atcactaattcgtatgttcttattacaggagttaatgaatgaacaat 27459805  T

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Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 71
Target Start/End: Original strand, 28134726 - 28134783
Alignment:
Q  14 taagatcactaatgcatctgttcttattacaggagttattgaatgaacaattaatgga 71  Q
    |||||||| |||||| | ||||||| |||||||||||  |||||||||||| ||||||    
T  28134726 taagatcattaatgcttatgttcttgttacaggagttgatgaatgaacaatcaatgga 28134783  T

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Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 73
Target Start/End: Complemental strand, 26114195 - 26114159
Alignment:
Q  37 ttattacaggagttattgaatgaacaattaatggatc 73  Q
    |||||||||||||||  ||||||||||||||||||||    
T  26114195 ttattacaggagttaaggaatgaacaattaatggatc 26114159  T

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Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 152
Target Start/End: Complemental strand, 27459801 - 27459741
Alignment:
Q  92 cacttgcggaaactgatattaccatcaaaccttctcaggaagaaaatgtaatatagtacca 152  Q
    ||||||| |||||||||  || | ||||||||||||||||| | ||||||||||| |||||    
T  27459801 cacttgcagaaactgatgctagcgtcaaaccttctcaggaaaataatgtaatataatacca 27459741  T

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Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 71
Target Start/End: Original strand, 28184891 - 28184947
Alignment:
Q  15 aagatcactaatgcatctgttcttattacaggagttattgaatgaacaattaatgga 71  Q
    ||||||| || ||| ||||||||| |||||||||||  |||||||||||| ||||||    
T  28184891 aagatcattattgcttctgttcttgttacaggagttgatgaatgaacaatcaatgga 28184947  T

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