View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4017_high_52 (Length: 208)

Name: NF4017_high_52
Description: NF4017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4017_high_52
NF4017_high_52
[»] chr1 (3 HSPs)
chr1 (18-189)||(26790767-26790938)
chr1 (21-76)||(26784554-26784609)
chr1 (13-71)||(26831263-26831321)


Alignment Details
Target: chr1 (Bit Score: 172; Significance: 1e-92; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 18 - 189
Target Start/End: Complemental strand, 26790938 - 26790767
Alignment:
Q  18 tcaaaggatggaaattcctatatctctccaatttacaggttccattttcttaatccaatttctaaactctttacttgttgttatgttaccaaaatatgat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26790938 tcaaaggatggaaattcctatatctctccaatttacaggttccattttcttaatccaatttctaaactctttacttgttgttatgttaccaaaatatgat 26790839  T
Q  118 gttacattggttttattttaatatatggtgttcttggtataggttaaaaacgaattaccaagtactttaaag 189  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26790838 gttacattggttttattttaatatatggtgttcttggtataggttaaaaacgaattaccaagtactttaaag 26790767  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 76
Target Start/End: Complemental strand, 26784609 - 26784554
Alignment:
Q  21 aaggatggaaattcctatatctctccaatttacaggttccattttcttaatccaat 76  Q
    |||||||||||||| |||| ||||||||| |||||||||||||| |||||| ||||    
T  26784609 aaggatggaaattcttatacctctccaatatacaggttccatttacttaattcaat 26784554  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 13 - 71
Target Start/End: Complemental strand, 26831321 - 26831263
Alignment:
Q  13 cagtatcaaaggatggaaattcctatatctctccaatttacaggttccattttcttaat 71  Q
    |||| ||||||||||||||||| |||| |||||| |||| ||||||| |||||||||||    
T  26831321 cagtctcaaaggatggaaattcttatacctctccgatttgcaggttcgattttcttaat 26831263  T

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