View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4017_low_10 (Length: 537)
Name: NF4017_low_10
Description: NF4017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4017_low_10 |
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| [»] scaffold0042 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 356; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 134 - 529
Target Start/End: Complemental strand, 41249121 - 41248731
Alignment:
| Q |
134 |
ggagcaactttgattggttgaattgtgtttcgtgactgatcacttcgagaagcttttcctcgagatatatagcagtgttggaaaaggggggccaaattgt |
233 |
Q |
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| T |
41249121 |
ggagcaactttgattggttgaattgtgtttcgtgactgatcacttcgagaagcttttcctcgagatatatagcagtgctggaaaaggggggccaaattgt |
41249022 |
T |
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| Q |
234 |
agcctatgcgaaacaaatttaagtccccactcttaatttgggtgttgtagtgctcaactttcaaaaggagttttctatatttttctcaatttgtacattt |
333 |
Q |
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| T |
41249021 |
agcctatgcgaaacaaatttaagtccccactcttaatttgggtgttgtagtgctcaactttcaaaaggagttttctatatttttctcaatttgtacattt |
41248922 |
T |
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| Q |
334 |
gtgatttaggtgtaactacaacaaacttatattcggtggcatttttctcacttgcttctgtatttttctctaattcatggctaccatttaccatctcaaa |
433 |
Q |
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| T |
41248921 |
gtgatttaggtgtaactacaacaaacttatattcggtggcatttttctcacttgcgactgtatttttctctaattcatggctaccatttaccatctcaaa |
41248822 |
T |
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| Q |
434 |
cttaatagaaggatcgtctttttgatttgacgggagacaacagccttgtaatgttgttccatcttgacgatggcgtgaccgatttaaaagtataat |
529 |
Q |
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| T |
41248821 |
ctt-----aaggatcgtgtttttaatttgacgggagacaacagccttgtaatgttgttccatcttgacgatggcgtgaccgatttaaaagtataat |
41248731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 51 - 109
Target Start/End: Complemental strand, 41249203 - 41249145
Alignment:
| Q |
51 |
gcttaaacgagttggcagcataacatcccttagattttacatttatttgatgaactgct |
109 |
Q |
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| T |
41249203 |
gcttaaacgagttggcagcataacatcccttagattttacatttatttgatgaactgct |
41249145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0042
Description:
Target: scaffold0042; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 61 - 101
Target Start/End: Original strand, 89979 - 90019
Alignment:
| Q |
61 |
gttggcagcataacatcccttagattttacatttatttgat |
101 |
Q |
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| T |
89979 |
gttggtagcataacataccttagattttacatttatttgat |
90019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 66 - 109
Target Start/End: Original strand, 34482473 - 34482516
Alignment:
| Q |
66 |
cagcataacatcccttagattttacatttatttgatgaactgct |
109 |
Q |
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| T |
34482473 |
cagcataacatcctttagatttcacatttatttgatggactgct |
34482516 |
T |
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