View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4017_low_17 (Length: 426)
Name: NF4017_low_17
Description: NF4017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4017_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 213 - 406
Target Start/End: Original strand, 4028328 - 4028521
Alignment:
| Q |
213 |
aactaaccttgacctttttcttccaaatgtctcataatttaactctcttcattaagaggaattgttgggatctaattttcaaatggttggagctacgaga |
312 |
Q |
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| T |
4028328 |
aactaaccttgacctttttcttccaaatgtctcataatttaactctcttcattaagaggaattgttgggatctaattttcaaatggttggagctacgaga |
4028427 |
T |
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| Q |
313 |
tagtagatacctttctattgttcaattttctttgcaaaggaaagaagggtcggaaagtctctcacttgatttggttaacaacagtttggtgcat |
406 |
Q |
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| T |
4028428 |
tagtagatacctttctattgttcaattttctttgcaaaggaaagaagggtcggaaagtctctcacttaatttggttaacaacagtttggtgcat |
4028521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 19 - 157
Target Start/End: Original strand, 4028134 - 4028272
Alignment:
| Q |
19 |
caaacgttgagttgcttaacaatttacatgctggaattatctgtatgaagcatctgacaatgacatgcagttatcttcaaatttaaatatattaacatag |
118 |
Q |
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| T |
4028134 |
caaacgttgagttgcttaacaatttacatgctggaattatctgtatgaagcatctgacaatgacatgcagttatcttcaaatttaaatatattaacatag |
4028233 |
T |
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| Q |
119 |
tgttaannnnnnnattaatgttggttgaaagaatttaaa |
157 |
Q |
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| T |
4028234 |
tgttaatttttttattaatgttggttgaaagaatttaaa |
4028272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 113
Target Start/End: Original strand, 4014503 - 4014577
Alignment:
| Q |
43 |
tacatgctggaattatctgtatgaagcatc----tgacaatgacatgcagttatcttcaaatttaaatatattaa |
113 |
Q |
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| T |
4014503 |
tacatgctggaattatctgtatgaatgaacaatgtgactatgacatgcggttatcttcaaatataaatattttaa |
4014577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 309 - 358
Target Start/End: Complemental strand, 26619056 - 26619007
Alignment:
| Q |
309 |
gagatagtagatacctttctattgttcaattttctttgcaaaggaaagaa |
358 |
Q |
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| T |
26619056 |
gagatagtagataattttctattgttcaatttgttttgcaaaggaaagaa |
26619007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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