View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4017_low_19 (Length: 396)
Name: NF4017_low_19
Description: NF4017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4017_low_19 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 292; Significance: 1e-164; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 377
Target Start/End: Original strand, 3739755 - 3740128
Alignment:
| Q |
1 |
accgaatggattcccatgtcacacaattgggggcaaaattggaataccggaatgaatttggtaggacaagccttatcattccaagttactacaagtggtg |
100 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
3739755 |
accggatggattcccatgtcacacaattgggggcaaaattggaatactggaatgaatttggtaggacaagccttatcattccaagttactacaagtggcg |
3739854 |
T |
|
| Q |
101 |
gaaaaactttagagttagattcagttgctccttcgaattggcaatttgggcagacctatgagggtaatggaaatttttagatacgtataatttagttgag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3739855 |
gaaaaactttagagttagattcagttgctccttcgaattggcaatttgggcagacctatgagggtaatggaaatttttagatacgtataatttagttgag |
3739954 |
T |
|
| Q |
201 |
aaatatatatagtcacaaactagactatttattacgtgtattgagttaaaaataaaattattacacgtatcaatgtatcatgtaatttcatgtgttatga |
300 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3739955 |
aaatatatatagtcacaaactagac----tattatgtgtattgagttaaaaataaaattattacacgtatcaatgtatcatgtaatttcatgtgttatgg |
3740050 |
T |
|
| Q |
301 |
ttaattcttnnnnnnnnnngtattttgattaatgaaagtctttgctttc--tagttcaaaaattggtttatggtacaat |
377 |
Q |
| |
|
||||||||| || ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
3740051 |
ttaattctt-aaaaaaaaagtgttttgattaatgaaagtctttgctttctatagttcaaaaattggtttatggtacaat |
3740128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 7 - 219
Target Start/End: Original strand, 3745478 - 3745690
Alignment:
| Q |
7 |
tggattcccatgtcacacaattgggggcaaaattggaataccggaatgaatttggtaggacaagccttatcattccaagttactacaagtggtggaaaaa |
106 |
Q |
| |
|
|||||| | ||||||| |||||||| ||||||||| || | ||| ||||| ||||||||||| || ||||| ||||||| |||||||| |||||||| |
|
|
| T |
3745478 |
tggatttctatgtcacgtaattggggacaaaattggcatcctggatctaattttgtaggacaagctttgtcatttcaagttagtacaagtgatggaaaaa |
3745577 |
T |
|
| Q |
107 |
ctttagagttagattcagttgctccttcgaattggcaatttgggcagacctatgagggtaatggaaatttttagatacgtataatttagttgagaaatat |
206 |
Q |
| |
|
||||| ||| ||||| |||| |||||| || ||||||||||| ||||| ||| ||| || ||||||||||||||| ||| | ||||||||||||||| |
|
|
| T |
3745578 |
ctttaacgtttgattccgttgttccttccaactggcaatttggacagacttatcaggccaagggaaatttttagataagtagattttagttgagaaataa |
3745677 |
T |
|
| Q |
207 |
atatagtcacaaa |
219 |
Q |
| |
|
| |||||||||| |
|
|
| T |
3745678 |
ctctagtcacaaa |
3745690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 7 - 219
Target Start/End: Original strand, 3732413 - 3732625
Alignment:
| Q |
7 |
tggattcccatgtcacacaattgggggcaaaattggaataccggaatgaatttggtaggacaagccttatcattccaagttactacaagtggtggaaaaa |
106 |
Q |
| |
|
|||||| | ||||||||||||||||| ||||||||| | || || |||| ||| |||||||| ||| ||||| | ||||| ||||||| |||||||| |
|
|
| T |
3732413 |
tggatttcgatgtcacacaattggggacaaaattgggacactagagtgaaattgttaggacaaagcttgtcatttcttgttacaacaagtgatggaaaaa |
3732512 |
T |
|
| Q |
107 |
ctttagagttagattcagttgctccttcgaattggcaatttgggcagacctatgagggtaatggaaatttttagatacgtataatttagttgagaaatat |
206 |
Q |
| |
|
|| | || || |||| ||||||||||||||||||||| ||||| || |||||||| ||||||||| || ||||||||| ||||||||||| |
|
|
| T |
3732513 |
tgttgggttttccttttgttgttccttcgaattggcaatttggtcagacgtacgagggtaagcaaaatttttaaatttgtataattttgttgagaaatac |
3732612 |
T |
|
| Q |
207 |
atatagtcacaaa |
219 |
Q |
| |
|
|| || ||||||| |
|
|
| T |
3732613 |
atctattcacaaa |
3732625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 7 - 161
Target Start/End: Complemental strand, 20522171 - 20522017
Alignment:
| Q |
7 |
tggattcccatgtcacacaattgggggcaaaattggaataccggaatgaatttggtaggacaagccttatcattccaagttactacaagtggtggaaaaa |
106 |
Q |
| |
|
|||||| ||||| ||||||||||||| ||| |||| |||| ||| |||||||||| || |||| ||||||||| ||||||||||| | ||||||| |
|
|
| T |
20522171 |
tggatttccatggcacacaattggggacaattttgggatactggattgaatttggttggtcaagacttatcatttttggttactacaagcgatggaaaag |
20522072 |
T |
|
| Q |
107 |
ctttagagttagattcagttgctccttcgaattggcaatttgggcagacctatga |
161 |
Q |
| |
|
|||||||||| ||| ||||||||||| |||||||||||||| || |||||||| |
|
|
| T |
20522071 |
ctttagagtttaattttgttgctccttctaattggcaatttggacaaacctatga |
20522017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University