View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4017_low_2 (Length: 816)
Name: NF4017_low_2
Description: NF4017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4017_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 401; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 392 - 800
Target Start/End: Original strand, 675152 - 675560
Alignment:
| Q |
392 |
aaaatcaatcttttcaacaaccctttgagtttctctcactaaaaatccaatcttttcacaaatttctcaaaccccattttgattctctttgattctgata |
491 |
Q |
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| T |
675152 |
aaaatcaatcttttcaacaaccctttgagtttctctcactaaaaatccaatcttttcacaaatttctcaaaccccattttgattctctttgattctgata |
675251 |
T |
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| Q |
492 |
cacccacaagaaaaagattcaatttttatcacaaatttacttggataaaaaatgggtttttcgaagaattcgaagaaaacacaaatagagaagagtttgg |
591 |
Q |
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| T |
675252 |
cacccacaagaaaaagattcaatttttatcacaaatttacttggataaaaaatgggtttttcgaagaattcgaagaaaacacaaatagagaagagtttgg |
675351 |
T |
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| Q |
592 |
aatctgaagctaagaaatgggtaattgctggaatttctctcaggtcattgaaacctataaacacaaagatgagcacaaaaaacggcgcagtttttgacga |
691 |
Q |
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| T |
675352 |
aatctgaagctaagaaatgggtaattgctggaatttctctcaggtcattgaagcccataaacacaaagatgagcacaaaaaacggcgcagtttttgacga |
675451 |
T |
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| Q |
692 |
agaagatgaagaaaattcaacaacaccgaccgcgaaagaagctaggataccggtgaacatgtcgtgtccaccggcaccaaggaagaagaaagtttcaaag |
791 |
Q |
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| T |
675452 |
agaagatgaagaaaattcaacaacaccgaccgcgaaagaagctaggataccggtgaacatgtcgtgtccaccggcaccaaggaagaagaaagtttcaaag |
675551 |
T |
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| Q |
792 |
tgtaacaat |
800 |
Q |
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| T |
675552 |
tgtaacaat |
675560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 674748 - 674923
Alignment:
| Q |
1 |
agactctgtcatcatcattatttcattcaataatctnnnnnnntccaaggataaaatcgtaattcttcatctcaaaattcatagagcgggagttagagcc |
100 |
Q |
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|||||||||||||||||||||||||||||||||| | ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
674748 |
agactctgtcatcatcattatttcattcaataatataaaaaaatccaaggttaaaatcgtaattcttcatctcaaaattcatagagcgggaattagagcc |
674847 |
T |
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| Q |
101 |
gttgcttctcaattcaatgaaattttcgcgccaaattttcatttcccacttgccctgcccgtaaattctcggtcag |
176 |
Q |
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| T |
674848 |
gttgcttctcaattcaatgaaattttcgcgccaaattttcatttcccacttgccctgcccgtaaattctcggtcag |
674923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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