View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4017_low_22 (Length: 371)
Name: NF4017_low_22
Description: NF4017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4017_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 19 - 364
Target Start/End: Original strand, 23634118 - 23634464
Alignment:
| Q |
19 |
agcattcctcatgttaacactc-gataacttatttatatatttatcgttaaagattctaacataacaaaattcacatatttgttaaaaacatatctctgt |
117 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23634118 |
agcattcctcatgttaacactcagataacttatttatatatttattgttaaagattctaacataacaaaattcacatatttgttaaaaacatatctctgt |
23634217 |
T |
|
| Q |
118 |
aaaataaattatttttatgagatgatactaaaatagcttgtctttttaaatatattttgaaattttatgataaaaaatcgtaacaaatggaataaatttg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23634218 |
aaaataaattatttttatgagatgatactaaaatagcttgtctttttaaatata-tttgaaattttatgataaaaaatcgtaacaaatggaataaatttg |
23634316 |
T |
|
| Q |
218 |
acctttataaaggacaagtggccggaaatatcaaagaggtcagttgtccatgattaaac-aatcggcttggacgttgatatttaatgatgtgatgactat |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
23634317 |
acctttataaaggacaagtggccggaaatatcaaagaggtcagttgtccatgattaaacaaatcggcttggacgttgatatttaatgatgtgatgactat |
23634416 |
T |
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| Q |
317 |
gagtataatcctaattcctaactactattcttagagtatcctatgcta |
364 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23634417 |
gagtataatcctaattcctaactactattcttagagtatcctatgcta |
23634464 |
T |
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