View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4017_low_23 (Length: 370)
Name: NF4017_low_23
Description: NF4017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4017_low_23 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 339; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 351
Target Start/End: Original strand, 3212074 - 3212424
Alignment:
| Q |
1 |
gtctttattgctgtaatttttgatcctcgtcgtaagttccaatttattaattggggattgaataagtattatgaaaaggaagttgctgattctttgtgtg |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3212074 |
gtctttattgctgtaattttttatcctcgttgtaagttccaatttattaattggggattgaataagtattatgaaaaggaagttgctgattctttgtgtg |
3212173 |
T |
|
| Q |
101 |
ataaggtaaaggaagctttaaacaaaatgtttgaaagctatagtcgtttctcaaataaaggccaagcagaaagtgtctcacaagaaatagaaggttcaga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
3212174 |
ataaggtaaaggaagctttaaacaaaatgtttgaaagctatagtcgtttctcaaataaaggccaagcagaaagtgtttcacaagaaatagaaggttcaga |
3212273 |
T |
|
| Q |
201 |
atttgttacagaagatgtggatgatcaatttgagaaggatatggatcaagatccgaatttgagtcaaactgaagtggatatctatctctcagagcctagg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3212274 |
atttgttacagaagatgtggatgatcaatttgagaaggatatggatcaagatccgaatttgagtcaaactgaagtggatatctatctctcagagcctagg |
3212373 |
T |
|
| Q |
301 |
gagaagaaaaatcctgattttgacatcttgaattggtggaaggtgaattcc |
351 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3212374 |
gagaagaaaaatcctgattttgacatcttgaattggtggaaggtgaattcc |
3212424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 33 - 142
Target Start/End: Complemental strand, 11217500 - 11217391
Alignment:
| Q |
33 |
taagttccaatttattaattggggattgaataagtattatgaaaaggaagttgctgattctttgtgtgataaggtaaaggaagctttaaacaaaatgttt |
132 |
Q |
| |
|
||||||| | |||||||||| | ||||||||||||||||||| ||| || |||||||||||||||||||||||||| |||||||||||||| |||||| |
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|
| T |
11217500 |
taagttctagtttattaattagtgattgaataagtattatgataagacagctgctgattctttgtgtgataaggtaagagaagctttaaacaatatgttt |
11217401 |
T |
|
| Q |
133 |
gaaagctata |
142 |
Q |
| |
|
|||||||||| |
|
|
| T |
11217400 |
gaaagctata |
11217391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 312 - 351
Target Start/End: Complemental strand, 11217383 - 11217344
Alignment:
| Q |
312 |
tcctgattttgacatcttgaattggtggaaggtgaattcc |
351 |
Q |
| |
|
|||| |||||||||||||||| |||||||||||||||||| |
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|
| T |
11217383 |
tcctaattttgacatcttgaactggtggaaggtgaattcc |
11217344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 339; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 351
Target Start/End: Original strand, 38337086 - 38337436
Alignment:
| Q |
1 |
gtctttattgctgtaatttttgatcctcgtcgtaagttccaatttattaattggggattgaataagtattatgaaaaggaagttgctgattctttgtgtg |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38337086 |
gtctttattgctgtaattttttatcctcgtcgtaagttccaatttattaattggggattgaataagtattatgaaaaggaagttgctgattctttgtgtg |
38337185 |
T |
|
| Q |
101 |
ataaggtaaaggaagctttaaacaaaatgtttgaaagctatagtcgtttctcaaataaaggccaagcagaaagtgtctcacaagaaatagaaggttcaga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |
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|
| T |
38337186 |
ataaggtaaaggaagctttaaacaaaatgtttgaaagctatagtcgtttctcaaataaaggccaagcagaaagtgtttcacaagaaatagaaggttcata |
38337285 |
T |
|
| Q |
201 |
atttgttacagaagatgtggatgatcaatttgagaaggatatggatcaagatccgaatttgagtcaaactgaagtggatatctatctctcagagcctagg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38337286 |
atttgttacagaagatgtggatgatcaatttgagaaggatatggatcaagatccgaatttgagtcaaactgaagtggatatctatctctcagagcctagg |
38337385 |
T |
|
| Q |
301 |
gagaagaaaaatcctgattttgacatcttgaattggtggaaggtgaattcc |
351 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38337386 |
gagaagaaaaatcctgattttgacatcttgaattggtggaaggtgaattcc |
38337436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 301 - 351
Target Start/End: Original strand, 19350381 - 19350431
Alignment:
| Q |
301 |
gagaagaaaaatcctgattttgacatcttgaattggtggaaggtgaattcc |
351 |
Q |
| |
|
|||||||||| |||| |||||||||| |||||||||||||||||||||||| |
|
|
| T |
19350381 |
gagaagaaaagtcctaattttgacatattgaattggtggaaggtgaattcc |
19350431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 59 - 113
Target Start/End: Original strand, 19350128 - 19350182
Alignment:
| Q |
59 |
tgaataagtattatgaaaaggaagttgctgattctttgtgtgataaggtaaagga |
113 |
Q |
| |
|
||||||| | ||||||||||||| ||||||||| ||||| ||||||||||||||| |
|
|
| T |
19350128 |
tgaataaatgttatgaaaaggaacttgctgattttttgtctgataaggtaaagga |
19350182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 101 - 351
Target Start/End: Complemental strand, 36078680 - 36078430
Alignment:
| Q |
101 |
ataaggtaaaggaagctttaaacaaaatgtttgaaagctatagtcgtttctcaaataaaggccaagcagaaagtgtctcacaagaaatagaaggttcaga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |
|
|
| T |
36078680 |
ataaggtaaaggaagctttaaacaaaatgtttgaaagctatagtcgtttctcaaataaaggccaagcagaaagtgtttcacaagaaatagaaggttcata |
36078581 |
T |
|
| Q |
201 |
atttgttacagaagatgtggatgatcaatttgagaaggatatggatcaagatccgaatttgagtcaaactgaagtggatatctatctctcagagcctagg |
300 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
36078580 |
atttgttacagaagatgttgatgatcaatttgagaaggatatggatcaagatccgaatttgagtcaaactgaagtggatatctatctctcagagtctagg |
36078481 |
T |
|
| Q |
301 |
gagaagaaaaatcctgattttgacatcttgaattggtggaaggtgaattcc |
351 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36078480 |
gagaagaaaaatcctgattttgacatcttgaattggtggaaggtgaattcc |
36078430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 29637961 - 29637768
Alignment:
| Q |
1 |
gtctttattgctgtaatttttgatcctcgtcgtaagttccaatttattaattggggattgaataagtattatgaaaaggaagttgctgattctttgtgtg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29637961 |
gtctttattgctgtaatttttgatcctcgtcgtaagttccaatttattaattggggattgaataagtattatgaaaaggaagttgctgattctttgtgtg |
29637862 |
T |
|
| Q |
101 |
ataaggtaaaggaagctttaaacaaaatgtttgaaagctatagtcgtttctcaaataaaggccaagcagaaagtgtctcacaagaaatagaagg |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29637861 |
ataaggtaaaggaagctttaaacaaaatgtttgaaagctatagtcgtttctcaaataaaggccaagcagaaagtgtctcacaagaaatagaagg |
29637768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 233 - 351
Target Start/End: Complemental strand, 29637773 - 29637655
Alignment:
| Q |
233 |
agaaggatatggatcaagatccgaatttgagtcaaactgaagtggatatctatctctcagagcctagggagaagaaaaatcctgattttgacatcttgaa |
332 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29637773 |
agaaggatatggatcaagatccgaatttgagtcaaactgaagtggatatctatctctcagagcctagggagaagaaaaatcctgattttgacatcttgaa |
29637674 |
T |
|
| Q |
333 |
ttggtggaaggtgaattcc |
351 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
29637673 |
ttggtggaaggtgaattcc |
29637655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 20417967 - 20417774
Alignment:
| Q |
1 |
gtctttattgctgtaatttttgatcctcgtcgtaagttccaatttattaattggggattgaataagtattatgaaaaggaagttgctgattctttgtgtg |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20417967 |
gtctttattgctgtaattttttatcctcgtcgtaagttccaatttattaattggggattgaataagtattatgaaaaggaagttgctgattctttgtgtg |
20417868 |
T |
|
| Q |
101 |
ataaggtaaaggaagctttaaacaaaatgtttgaaagctatagtcgtttctcaaataaaggccaagcagaaagtgtctcacaagaaatagaagg |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20417867 |
ataaggtaaaggaagctttaaacaaaatgtttgaaagctatagtcgtttctcaaataaaggccaagcagaaagtgtctcacaagaaatagaagg |
20417774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 218 - 342
Target Start/End: Original strand, 26293046 - 26293170
Alignment:
| Q |
218 |
tggatgatcaatttgagaaggatatggatcaagatccgaatttgagtcaaactgaagtggatatctatctctcagagcctagggagaagaaaaatcctga |
317 |
Q |
| |
|
|||||||| |||||||||||| |||||||||||||||||| ||||| ||| |||||||||| | ||| || ||||||| | |||||||||||| ||| |
|
|
| T |
26293046 |
tggatgataaatttgagaagggcatggatcaagatccgaatatgagtaaaaatgaagtggatttgtatatcatggagcctaagtagaagaaaaatcatga |
26293145 |
T |
|
| Q |
318 |
ttttgacatcttgaattggtggaag |
342 |
Q |
| |
|
||||||||||||||| ||||||||| |
|
|
| T |
26293146 |
ttttgacatcttgaactggtggaag |
26293170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 350
Target Start/End: Original strand, 30521435 - 30521467
Alignment:
| Q |
318 |
ttttgacatcttgaattggtggaaggtgaattc |
350 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |
|
|
| T |
30521435 |
ttttgatatcttgaattggtggaaggtgaattc |
30521467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 34 - 113
Target Start/End: Original strand, 18348996 - 18349075
Alignment:
| Q |
34 |
aagttccaatttattaattggggattgaataagtattatgaaaaggaagttgctgattctttgtgtgataaggtaaagga |
113 |
Q |
| |
|
||||| |||||| |||| ||||| |||||||| ||||||||||||||| ||||||||| ||||||||||||| ||||||| |
|
|
| T |
18348996 |
aagtttcaatttgttaaatggggcttgaataaatattatgaaaaggaacttgctgattttttgtgtgataagataaagga |
18349075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 301 - 351
Target Start/End: Original strand, 25346557 - 25346607
Alignment:
| Q |
301 |
gagaagaaaaatcctgattttgacatcttgaattggtggaaggtgaattcc |
351 |
Q |
| |
|
|||||||||| |||| |||||||||| |||||||||| ||||||||||||| |
|
|
| T |
25346557 |
gagaagaaaagtcctaattttgacatattgaattggttgaaggtgaattcc |
25346607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 40 - 113
Target Start/End: Original strand, 25346284 - 25346357
Alignment:
| Q |
40 |
caatttattaattggggattgaataagtattatgaaaaggaagttgctgattctttgtgtgataaggtaaagga |
113 |
Q |
| |
|
|||||| |||| ||||| ||||||| | ||||||||||||| ||| ||||| ||||| ||||||||||||||| |
|
|
| T |
25346284 |
caatttgttaagtggggcatgaataaatgttatgaaaaggaacttggtgattttttgtctgataaggtaaagga |
25346357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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