View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4017_low_28 (Length: 337)
Name: NF4017_low_28
Description: NF4017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4017_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 19 - 327
Target Start/End: Original strand, 47460029 - 47460337
Alignment:
| Q |
19 |
aagccaatcaccttctttgtcttgataaaccagttcatactgttgttgatcatgatcacctgttaatttccaactacatgaattaatgccgtgcatatac |
118 |
Q |
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| T |
47460029 |
aagccaatcaccttctttgtcttgataaaccagttcatactgttgttgatcatgatcacctgttaatttccaactgcatgaattaatgccgtgcatatac |
47460128 |
T |
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| Q |
119 |
tatacatacctcaactaattagtagtactaattattaacttggaaatttaattagaaatttgaataaacaacatacataagacgtacgtacatttttcaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47460129 |
tatacatacctcaactaattagtagtactaattattaacttggaaatttaattagaaatttgaataaacaacatacataagacgtacgtacatttttcaa |
47460228 |
T |
|
| Q |
219 |
acatgtccattaaagtttgattgagagtatgaaatgaatggtgcatgccaagattaacctttcgagctattcctacaccttccattttcaccttcacgta |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
47460229 |
acatgtccattaaagtttgattgagagtatgaaatgaatggtgcatgccaagattaacctttcgagctattcctacaccttccatcttcaccttcacgta |
47460328 |
T |
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| Q |
319 |
attcctatg |
327 |
Q |
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||||||||| |
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| T |
47460329 |
attcctatg |
47460337 |
T |
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