View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4017_low_29 (Length: 331)

Name: NF4017_low_29
Description: NF4017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4017_low_29
NF4017_low_29
[»] chr8 (30 HSPs)
chr8 (98-320)||(38861957-38862173)
chr8 (1-98)||(9122271-9122368)
chr8 (1-97)||(14548008-14548104)
chr8 (104-325)||(38841334-38841547)
chr8 (1-97)||(12831133-12831229)
chr8 (1-97)||(34012214-34012310)
chr8 (1-100)||(1179855-1179954)
chr8 (6-97)||(23122515-23122606)
chr8 (8-97)||(42710212-42710301)
chr8 (1-97)||(504039-504135)
chr8 (1-93)||(40423865-40423957)
chr8 (1-85)||(43414511-43414595)
chr8 (1-97)||(15197419-15197515)
chr8 (250-316)||(38847136-38847198)
chr8 (133-220)||(38850410-38850497)
chr8 (250-316)||(38827558-38827620)
chr8 (1-81)||(5957916-5957996)
chr8 (1-85)||(8841362-8841446)
chr8 (1-77)||(25838275-25838351)
chr8 (1-81)||(37038565-37038645)
chr8 (9-99)||(44507004-44507093)
chr8 (1-93)||(15048103-15048196)
chr8 (1-85)||(15258859-15258943)
chr8 (1-43)||(10621059-10621101)
chr8 (26-103)||(16056313-16056390)
chr8 (1-85)||(4854793-4854877)
chr8 (26-94)||(24307714-24307782)
chr8 (26-94)||(30479395-30479463)
chr8 (5-85)||(32707933-32708013)
chr8 (1-93)||(42221601-42221693)
[»] chr2 (22 HSPs)
chr2 (1-103)||(17473106-17473208)
chr2 (1-106)||(9058566-9058671)
chr2 (1-97)||(19930738-19930834)
chr2 (1-99)||(13438429-13438527)
chr2 (1-103)||(28863541-28863643)
chr2 (1-97)||(40701564-40701660)
chr2 (1-106)||(10249291-10249396)
chr2 (1-97)||(7465653-7465749)
chr2 (1-97)||(30915549-30915645)
chr2 (1-85)||(42257279-42257363)
chr2 (1-100)||(32505563-32505662)
chr2 (1-93)||(2533209-2533301)
chr2 (1-97)||(28381573-28381669)
chr2 (6-97)||(4060776-4060867)
chr2 (6-85)||(20700906-20700985)
chr2 (26-99)||(5574416-5574489)
chr2 (1-81)||(21301434-21301514)
chr2 (8-99)||(38882727-38882818)
chr2 (1-95)||(33436020-33436114)
chr2 (9-81)||(36168930-36169002)
chr2 (1-85)||(40613832-40613916)
chr2 (26-85)||(43490232-43490291)
[»] scaffold0321 (1 HSPs)
scaffold0321 (1-97)||(10027-10123)
[»] chr1 (23 HSPs)
chr1 (1-98)||(41758891-41758988)
chr1 (1-97)||(27564653-27564749)
chr1 (1-99)||(48716198-48716296)
chr1 (1-96)||(37649284-37649379)
chr1 (1-83)||(38632253-38632335)
chr1 (1-97)||(9474794-9474890)
chr1 (7-106)||(26274524-26274620)
chr1 (1-97)||(47452238-47452334)
chr1 (1-85)||(50630544-50630628)
chr1 (1-97)||(43218-43314)
chr1 (1-97)||(3000405-3000501)
chr1 (1-85)||(32813333-32813417)
chr1 (1-97)||(38595240-38595336)
chr1 (1-85)||(49811457-49811541)
chr1 (1-97)||(2582001-2582097)
chr1 (1-81)||(51898617-51898697)
chr1 (7-88)||(37926365-37926446)
chr1 (1-103)||(8346299-8346402)
chr1 (1-84)||(45044491-45044574)
chr1 (26-85)||(47748553-47748612)
chr1 (17-85)||(34339978-34340045)
chr1 (1-45)||(44454065-44454109)
chr1 (1-45)||(44548346-44548390)
[»] chr7 (20 HSPs)
chr7 (1-97)||(19329928-19330024)
chr7 (1-97)||(38837303-38837399)
chr7 (1-97)||(8080301-8080397)
chr7 (1-97)||(4999432-4999528)
chr7 (1-97)||(40957793-40957889)
chr7 (1-97)||(32951411-32951507)
chr7 (29-102)||(3434666-3434739)
chr7 (1-71)||(3694453-3694523)
chr7 (7-97)||(11044270-11044360)
chr7 (1-103)||(35137619-35137721)
chr7 (1-98)||(38267126-38267223)
chr7 (1-77)||(3784081-3784157)
chr7 (1-85)||(31735963-31736047)
chr7 (1-97)||(7389475-7389570)
chr7 (1-81)||(35522962-35523042)
chr7 (6-85)||(19436117-19436196)
chr7 (15-84)||(26296744-26296813)
chr7 (26-97)||(36362125-36362196)
chr7 (52-97)||(36361843-36361888)
chr7 (1-85)||(18207265-18207349)
[»] chr6 (12 HSPs)
chr6 (1-97)||(17598640-17598736)
chr6 (1-97)||(11427704-11427800)
chr6 (1-97)||(32869764-32869860)
chr6 (6-97)||(29857918-29858009)
chr6 (1-97)||(22880576-22880672)
chr6 (6-103)||(946467-946564)
chr6 (1-97)||(23128044-23128141)
chr6 (1-85)||(31110691-31110775)
chr6 (1-85)||(31976334-31976418)
chr6 (1-94)||(15832663-15832756)
chr6 (6-97)||(6209384-6209474)
chr6 (1-85)||(30870100-30870184)
[»] chr4 (19 HSPs)
chr4 (1-97)||(41236433-41236529)
chr4 (1-97)||(42044285-42044381)
chr4 (1-98)||(6034130-6034227)
chr4 (1-98)||(48182966-48183063)
chr4 (1-97)||(24995025-24995121)
chr4 (1-85)||(29239972-29240056)
chr4 (1-97)||(11511381-11511476)
chr4 (1-97)||(23608321-23608417)
chr4 (1-85)||(50052358-50052442)
chr4 (1-80)||(480382-480461)
chr4 (1-95)||(54473453-54473547)
chr4 (1-85)||(31910278-31910362)
chr4 (9-98)||(53352491-53352572)
chr4 (1-85)||(40574865-40574949)
chr4 (1-85)||(41823968-41824052)
chr4 (1-45)||(29234215-29234259)
chr4 (25-81)||(50526105-50526161)
chr4 (26-85)||(29589670-29589729)
chr4 (7-85)||(29547889-29547967)
[»] chr3 (20 HSPs)
chr3 (1-97)||(54868813-54868909)
chr3 (1-98)||(53982097-53982194)
chr3 (1-97)||(33644286-33644382)
chr3 (1-103)||(31456775-31456877)
chr3 (6-96)||(36707347-36707437)
chr3 (1-97)||(49607500-49607596)
chr3 (1-97)||(52629386-52629482)
chr3 (1-85)||(41189694-41189778)
chr3 (1-85)||(26141460-26141546)
chr3 (1-95)||(9563085-9563179)
chr3 (6-85)||(11347852-11347931)
chr3 (1-81)||(51419294-51419374)
chr3 (26-97)||(11095285-11095356)
chr3 (3-84)||(33118781-33118863)
chr3 (1-85)||(8076479-8076563)
chr3 (1-97)||(17470491-17470587)
chr3 (1-85)||(20764845-20764929)
chr3 (1-81)||(47531951-47532031)
chr3 (29-97)||(48587019-48587087)
chr3 (1-41)||(24699928-24699968)
[»] chr5 (17 HSPs)
chr5 (1-98)||(35785285-35785382)
chr5 (1-97)||(18520802-18520898)
chr5 (1-87)||(36732870-36732956)
chr5 (1-97)||(2740360-2740456)
chr5 (1-97)||(33149556-33149652)
chr5 (1-97)||(14831900-14831996)
chr5 (1-97)||(40145493-40145589)
chr5 (1-85)||(6679784-6679868)
chr5 (29-98)||(31132448-31132517)
chr5 (1-85)||(13811738-13811822)
chr5 (1-81)||(15409544-15409624)
chr5 (1-85)||(35943822-35943906)
chr5 (51-97)||(16115250-16115296)
chr5 (1-93)||(26720602-26720694)
chr5 (1-93)||(26990351-26990443)
chr5 (1-44)||(28177861-28177904)
chr5 (1-85)||(31009074-31009158)
[»] scaffold0237 (1 HSPs)
scaffold0237 (6-97)||(4120-4211)
[»] scaffold1268 (1 HSPs)
scaffold1268 (1-81)||(863-943)
[»] scaffold1267 (1 HSPs)
scaffold1267 (1-81)||(863-943)


Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-103; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 98 - 320
Target Start/End: Complemental strand, 38862173 - 38861957
Alignment:
Q  98 aaaaaataagtaacaagcaactagggtctaagcaccaaattataataatagttaaactcaaactttagtaaaagcaagattctatatcctactaccatat 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  38862173 aaaaaataagtaacaagcaactagggtctaagcaccaaattataataatagttaaactcaaactttagtaaaagcaagatactatatcctactaccatat 38862074  T
Q  198 ttttaaacttccctatatatagtcccctaactaagatacaacataacagcaactcaagctctaattaactaactcataattaaaattccccaacaaaaaa 297  Q
    |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||    
T  38862073 ttttaaacttccctatatata--cccctaactaagatacaacataacagcaactcaagctctaattaactaactca----taaaattccccaacaaaaaa 38861980  T
Q  298 caatgtatgcttctacttccttt 320  Q
    |||||||||||||||||||||||    
T  38861979 caatgtatgcttctacttccttt 38861957  T

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Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 9122271 - 9122368
Alignment:
Q  1 acaaacacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctatatatcattactca 98  Q
    |||| |||||||| ||||||||| ||||||||||||||||||||| |  ||||||||||||||||||| |||||||  ||||||| ||||||||||||    
T  9122271 acaagcacactttctcttttctctcctcttctctcttcctaatgcatggggtgtacaagagtgtatgggaataaagaatgtctatgtatcattactca 9122368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 14548008 - 14548104
Alignment:
Q  1 acaaacacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctatatatcattactc 97  Q
    |||| |||||||| ||||||||| ||||||||||||||||||||| |  ||||||||||  ||||||| |||||||||||||||| |||||||||||    
T  14548008 acaagcacactttctcttttctctcctcttctctcttcctaatgcatggggtgtacaaggatgtatgggaataaagggtgtctatgtatcattactc 14548104  T

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Target: chr8; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 104 - 325
Target Start/End: Complemental strand, 38841547 - 38841334
Alignment:
Q  104 taagtaacaagcaactagggtctaagcaccaaattataataatagttaaactcaaactttagtaaaagcaagattctatatcctac--taccatattttt 201  Q
    ||||||| || ||||||||||||||| |||||||||||  |||||||||| |||||||||    |||||||||| | |||||||||  || |||||        
T  38841547 taagtaataaacaactagggtctaagtaccaaattatagcaatagttaaattcaaacttttaataaagcaagataccatatcctacaatatcatat---- 38841452  T
Q  202 aaacttccctatatatagtcccctaactaagatacaacataacagcaactcaagctctaattaactaactcat-aattaaaattccccaacaaaaaacaa 300  Q
     |||||||||||||||| ||| | ||||||||||  |||||| | |||||||||||||||| ||||||||||| ||||  | |||| ||| ||||||| |    
T  38841451 -aacttccctatatataatcctc-aactaagata--acataaaaacaactcaagctctaataaactaactcatcaatt--acttcctcaagaaaaaac-a 38841359  T
Q  301 tgtatgcttctacttcctttgctac 325  Q
    |||||||||||| ||||||| ||||    
T  38841358 tgtatgcttctatttcctttactac 38841334  T

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Target: chr8; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 12831133 - 12831229
Alignment:
Q  1 acaaacacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctatatatcattactc 97  Q
    |||| |||||||| ||||||||| ||||||||||||||||||||| |  |||||||||| |||||||  |||||| ||||||||| |||||||||||    
T  12831133 acaagcacactttctcttttctctcctcttctctcttcctaatgcatggggtgtacaagggtgtatgagaataaatggtgtctatgtatcattactc 12831229  T

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Target: chr8; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 34012310 - 34012214
Alignment:
Q  1 acaaacacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctatatatcattactc 97  Q
    |||| |||||||| ||||||||| ||||||||||||||||||||| |  |||||||||| ||||| |  |||||||||||||||| |||||||||||    
T  34012310 acaagcacactttctcttttctctcctcttctctcttcctaatgcatggggtgtacaagggtgtacgagaataaagggtgtctatgtatcattactc 34012214  T

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Target: chr8; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 1179954 - 1179855
Alignment:
Q  1 acaaacacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctatatatcattactcaaa 100  Q
    |||| |||||||| ||||||||| ||||||||||||||||||||| |  ||||||||||  | ||||| |||||||| ||||||| ||||||||||||||    
T  1179954 acaagcacactttctcttttctctcctcttctctcttcctaatgcatggggtgtacaaggatatatgggaataaaggatgtctatctatcattactcaaa 1179855  T

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Target: chr8; HSP #8
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 6 - 97
Target Start/End: Complemental strand, 23122606 - 23122515
Alignment:
Q  6 cacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctatatatcattactc 97  Q
    |||||||| ||||||||| ||| ||||||||||||||||| |  |||||||||| |||||||  |||||||||||||||| |||||||||||    
T  23122606 cacactttctcttttctctcctgttctctcttcctaatgcatggggtgtacaagggtgtatgagaataaagggtgtctatgtatcattactc 23122515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 8 - 97
Target Start/End: Complemental strand, 42710301 - 42710212
Alignment:
Q  8 cactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctatatatcattactc 97  Q
    |||||| ||||||||| ||||||||||||||||||||  |  |||||||||| |||||||| |||||||||||||| | |||||||||||    
T  42710301 cactttctcttttctctcctcttctctcttcctaatgtatggggtgtacaagggtgtatgggaataaagggtgtctgtgtatcattactc 42710212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 504135 - 504039
Alignment:
Q  1 acaaacacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctatatatcattactc 97  Q
    |||| ||||| || ||||||||| | ||||||||||||||||||| |  |||||||||| |||||||  |||||||||||||||| |||||||||||    
T  504135 acaagcacacattctcttttctctcatcttctctcttcctaatgcatggggtgtacaagggtgtatgagaataaagggtgtctatgtatcattactc 504039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 40423957 - 40423865
Alignment:
Q  1 acaaacacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctatatatcatt 93  Q
    |||| |||||||| ||||||||| ||||||||||||||||||| | |  |||||||||| |||||||| |||||| ||||||||| |||||||    
T  40423957 acaagcacactttctcttttctctcctcttctctcttcctaatacatgaggtgtacaagggtgtatgggaataaaaggtgtctatgtatcatt 40423865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 43414595 - 43414511
Alignment:
Q  1 acaaacacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctat 85  Q
    |||| |||||||| ||||||||| ||||||||||||||||||||  |  |||||||||| |||||||| ||||||||||||||||    
T  43414595 acaagcacactttctcttttctctcctcttctctcttcctaatgtatggggtgtacaagggtgtatggcaataaagggtgtctat 43414511  T

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Target: chr8; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 15197419 - 15197515
Alignment:
Q  1 acaaacacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctatatatcattactc 97  Q
    |||| |||||||| ||||||||| |||||| |||||||| ||||| |  |||||||||| |||||||| ||||||  |||||||| |||||||||||    
T  15197419 acaagcacactttctcttttctctcctcttttctcttccaaatgcatgaggtgtacaagggtgtatgggaataaaaagtgtctatgtatcattactc 15197515  T

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Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 250 - 316
Target Start/End: Complemental strand, 38847198 - 38847136
Alignment:
Q  250 ctcaagctctaattaactaactcataattaaaattccccaacaaaaaacaatgtatgcttctacttc 316  Q
    ||||||||||||||||||||||||| |    |||||||||||| |||||||||||||||||||||||    
T  38847198 ctcaagctctaattaactaactcatca----aattccccaacagaaaacaatgtatgcttctacttc 38847136  T

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Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 133 - 220
Target Start/End: Original strand, 38850410 - 38850497
Alignment:
Q  133 caaattataataatagttaaactcaaactttagtaaaagcaagattctatatcctactaccatatt-tttaaacttccctatatatagt 220  Q
    ||||||||||||||||||||| |||||||||| |||||||||||| | |||||||| || |||||| | ||||||  ||||||||||||    
T  38850410 caaattataataatagttaaattcaaactttaataaaagcaagataccatatccta-tatcatattatataaactaacctatatatagt 38850497  T

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Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 250 - 316
Target Start/End: Complemental strand, 38827620 - 38827558
Alignment:
Q  250 ctcaagctctaattaactaactcataattaaaattccccaacaaaaaacaatgtatgcttctacttc 316  Q
    |||||||||||||||||||||| || |    |||||||||||| |||||||||||||||||||||||    
T  38827620 ctcaagctctaattaactaacttatca----aattccccaacagaaaacaatgtatgcttctacttc 38827558  T

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Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 5957916 - 5957996
Alignment:
Q  1 acaaacacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgt 81  Q
    |||| |||||||| ||||| ||| ||||||||||||||||| ||| |  |||||||||| |||||||  ||||||||||||    
T  5957916 acaatcacactttctctttcctctcctcttctctcttcctagtgcatgaggtgtacaagggtgtatgagaataaagggtgt 5957996  T

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Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 8841446 - 8841362
Alignment:
Q  1 acaaacacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctat 85  Q
    |||| |||||||| ||||| ||| |||||||||| |||||| ||| |  ||||||||||||||||||  |||||| |||||||||    
T  8841446 acaagcacactttctctttcctctcctcttctcttttcctagtgcatggggtgtacaagagtgtatgagaataaatggtgtctat 8841362  T

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Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 25838275 - 25838351
Alignment:
Q  1 acaaacacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagg 77  Q
    |||| |||||||||||||||||| |||||||||| || ||||||  || ||||||||||  ||||||| ||||||||    
T  25838275 acaagcacactttttcttttctctcctcttctcttttgctaatgtatagggtgtacaaggttgtatggcaataaagg 25838351  T

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Target: chr8; HSP #20
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 37038565 - 37038645
Alignment:
Q  1 acaaacacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgt 81  Q
    |||| |||||||| | ||| ||| ||||||||||||||||| ||| |  |||||||||| |||||| ||||||||||||||    
T  37038565 acaagcacactttctatttcctctcctcttctctcttcctagtgcatggggtgtacaagggtgtatagaaataaagggtgt 37038645  T

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Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 99
Target Start/End: Complemental strand, 44507093 - 44507004
Alignment:
Q  9 actttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctatatatcattactcaa 99  Q
    ||||| ||||||||| | ||||||||||||||||||| |  |||||||||| |||||||  ||||||   ||||||| |||||||||||||    
T  44507093 actttctcttttctctcatcttctctcttcctaatgcatggggtgtacaagggtgtatgagaataaa-tatgtctatgtatcattactcaa 44507004  T

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Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 15048196 - 15048103
Alignment:
Q  1 acaaacacactttttcttttc-tcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctatatatcatt 93  Q
    |||| |||||||| ||||||  || ||||||||||||||||||||  |  | |||||||| |||||| | ||||||||||||||||||| ||||    
T  15048196 acaagcacactttctctttttatctcctcttctctcttcctaatgtatgggatgtacaagggtgtatcggaataaagggtgtctatataacatt 15048103  T

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Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 15258943 - 15258859
Alignment:
Q  1 acaaacacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctat 85  Q
    |||| |||| ||| ||||| ||| |||||||||||||||||     || | ||||||| ||||||||||||||||||||||||||    
T  15258943 acaagcacattttctctttcctctcctcttctctcttcctagaatataggatgtacaaaagtgtatggaaataaagggtgtctat 15258859  T

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Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 10621101 - 10621059
Alignment:
Q  1 acaaacacactttttcttttctcccctcttctctcttcctaat 43  Q
    |||| |||||||| ||||||||| |||||||||||||||||||    
T  10621101 acaagcacactttctcttttctctcctcttctctcttcctaat 10621059  T

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Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 103
Target Start/End: Complemental strand, 16056390 - 16056313
Alignment:
Q  26 ctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctatatatcattactcaaaaaa 103  Q
    |||||||||||||||||| | |  |||||||||| ||||||| || |||| ||||||||| || |||| | |||||||    
T  16056390 ctcttctctcttcctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacatttcccaaaaaa 16056313  T

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Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 4854877 - 4854793
Alignment:
Q  1 acaaacacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctat 85  Q
    |||| |||||||| ||||||||| ||||||||||||| ||||||  |  | |||||||| || ||||  ||||||| ||||||||    
T  4854877 acaagcacactttctcttttctctcctcttctctcttactaatgtatgggatgtacaagggtatatgagaataaagagtgtctat 4854793  T

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Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 94
Target Start/End: Complemental strand, 24307782 - 24307714
Alignment:
Q  26 ctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctatatatcatta 94  Q
    |||||||||||||||||| | |  |||||||||| ||||||| || |||| ||||||||| || |||||    
T  24307782 ctcttctctcttcctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacatta 24307714  T

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Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 94
Target Start/End: Complemental strand, 30479463 - 30479395
Alignment:
Q  26 ctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctatatatcatta 94  Q
    |||||||||||||||||| | |  |||||||||| ||||||| || |||| ||||||||| || |||||    
T  30479463 ctcttctctcttcctaatacatgaggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacatta 30479395  T

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Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 85
Target Start/End: Complemental strand, 32708013 - 32707933
Alignment:
Q  5 acacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctat 85  Q
    ||||||||| |||||  ||  |||||||||||||||||| | |  |||||||||| ||||||| || |||| |||||||||    
T  32708013 acacactttctctttcttcttctcttctctcttcctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctat 32707933  T

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Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 42221601 - 42221693
Alignment:
Q  1 acaaacacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctatatatcatt 93  Q
    |||| |||||||| |||||  || | ||||||||||||| |||   || |||||||||| ||||||| ||||||||| ||| |||||| ||||    
T  42221601 acaagcacactttctctttcatctcatcttctctcttccaaatatatagggtgtacaagggtgtatgtaaataaaggatgtttatataacatt 42221693  T

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Target: chr2 (Bit Score: 67; Significance: 1e-29; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 17473106 - 17473208
Alignment:
Q  1 acaaacacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctatatatcattactcaaa 100  Q
    |||| |||||||| ||||||||| ||||||||||||||||||||| |  |||||||||| |||||||| |||||||||||||||| ||||||||||||||    
T  17473106 acaagcacactttctcttttctctcctcttctctcttcctaatgcatgaggtgtacaagggtgtatgggaataaagggtgtctatgtatcattactcaaa 17473205  T
Q  101 aaa 103  Q
    |||    
T  17473206 aaa 17473208  T

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Target: chr2; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 9058566 - 9058671
Alignment:
Q  1 acaaacacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctatatatcattactcaaa 100  Q
    |||| |||||||| ||||||||| ||||||||||||||||||||| |  ||||||||||||||||||| |||||||||| | ||||||||||||||| ||    
T  9058566 acaagcacactttctcttttctctcctcttctctcttcctaatgcatggggtgtacaagagtgtatgggaataaagggtatttatatatcattactcgaa 9058665  T
Q  101 aaataa 106  Q
    ||||||    
T  9058666 aaataa 9058671  T

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Target: chr2; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 19930834 - 19930738
Alignment:
Q  1 acaaacacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctatatatcattactc 97  Q
    ||||||||||||| ||||||||| ||||||||||||||||||||| |  |||||||||| |||||||| |||||| ||||||||| |||||||||||    
T  19930834 acaaacacactttctcttttctctcctcttctctcttcctaatgcatgaggtgtacaagggtgtatgggaataaaaggtgtctatgtatcattactc 19930738  T

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Target: chr2; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 13438429 - 13438527
Alignment:
Q  1 acaaacacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctatatatcattactcaa 99  Q
    |||| |||||||| ||||||||| ||||||||||||||||||||| |  ||||||||||  ||||||| |||||||||||||||| |||||||||||||    
T  13438429 acaagcacactttctcttttctctcctcttctctcttcctaatgcatggggtgtacaaggatgtatgggaataaagggtgtctatgtatcattactcaa 13438527  T

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Target: chr2; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 28863541 - 28863643
Alignment:
Q  1 acaaacacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctatatatcattactcaaa 100  Q
    |||| |||||||| |||||| || ||||||||||||||||||||| |  |||||||||| |||||||| |||||||||||||||| |||||||||||| |    
T  28863541 acaagcacactttctcttttatctcctcttctctcttcctaatgcatgaggtgtacaagggtgtatgggaataaagggtgtctatgtatcattactcata 28863640  T
Q  101 aaa 103  Q
    |||    
T  28863641 aaa 28863643  T

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Target: chr2; HSP #6
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 40701564 - 40701660
Alignment:
Q  1 acaaacacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctatatatcattactc 97  Q
    |||| |||||||| ||||||||| | ||||||||||||||||||| |  |||||||||| ||||||||||||||| ||||||||| |||||||||||    
T  40701564 acaatcacactttctcttttctctcatcttctctcttcctaatgcatcgggtgtacaagggtgtatggaaataaaaggtgtctatgtatcattactc 40701660  T

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Target: chr2; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 10249396 - 10249291
Alignment:
Q  1 acaaacacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctatatatcattactcaaa 100  Q
    |||| |||||||| ||||||||| |||||| |||||||||||||| |  |||||||||| |||||||  |||||||||||||||| ||||||||||| ||    
T  10249396 acaagcacactttctcttttctctcctcttttctcttcctaatgcatggggtgtacaagggtgtatgagaataaagggtgtctatgtatcattactccaa 10249297  T
Q  101 aaataa 106  Q
     |||||    
T  10249296 taataa 10249291  T

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Target: chr2; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 7465749 - 7465653
Alignment:
Q  1 acaaacacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctatatatcattactc 97  Q
    |||| |||||||| |||||| || | ||||||||||||||||||| |  |||||||||| |||||||| |||||||||||||||| |||||||||||    
T  7465749 acaagcacactttctcttttatctcttcttctctcttcctaatgcatgaggtgtacaagggtgtatgggaataaagggtgtctatgtatcattactc 7465653  T

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Target: chr2; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 30915549 - 30915645
Alignment:
Q  1 acaaacacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctatatatcattactc 97  Q
    |||| |||||||| ||||||||| | ||||||||||||||||| | |  |||||||||| |||||||||||||| || ||||||| |||||||||||    
T  30915549 acaagcacactttctcttttctctcatcttctctcttcctaatacatggggtgtacaagggtgtatggaaataatggatgtctatgtatcattactc 30915645  T

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Target: chr2; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 42257279 - 42257363
Alignment:
Q  1 acaaacacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctat 85  Q
    |||| |||||||| ||||||||| |||||||| |||||||||||  |  ||||||||||||||||| ||||||||||||||||||    
T  42257279 acaagcacactttctcttttctctcctcttctttcttcctaatgtatggggtgtacaagagtgtatagaaataaagggtgtctat 42257363  T

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Target: chr2; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 32505662 - 32505563
Alignment:
Q  1 acaaacacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctatatatcattactcaaa 100  Q
    |||| |||||||| | ||||||| |||||||||||||| |||||| |  |||||||||| |||||||  ||||||| |||||||| ||||||||||||||    
T  32505662 acaagcacactttctattttctctcctcttctctcttcttaatgcatggggtgtacaagggtgtatgagaataaagagtgtctatgtatcattactcaaa 32505563  T

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Target: chr2; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 2533209 - 2533301
Alignment:
Q  1 acaaacacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctatatatcatt 93  Q
    |||| ||||||||||||||| || ||||||||||||||| ||||  |  |||||||||| |||||||| |||||||||||| |||||| ||||    
T  2533209 acaagcacactttttcttttatctcctcttctctcttcccaatgtatggggtgtacaagggtgtatgggaataaagggtgtatatataacatt 2533301  T

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Target: chr2; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 28381669 - 28381573
Alignment:
Q  1 acaaacacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctatatatcattactc 97  Q
    |||| |||||||| ||||||||| | |||||||||||||||||   |  ||||||||||  ||||||| |||||||||||||||| |||||||||||    
T  28381669 acaagcacactttctcttttctctcatcttctctcttcctaatatatggggtgtacaaggatgtatgggaataaagggtgtctatgtatcattactc 28381573  T

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Target: chr2; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 6 - 97
Target Start/End: Original strand, 4060776 - 4060867
Alignment:
Q  6 cacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctatatatcattactc 97  Q
    |||||||| | ||||||| | ||||||||||||||||||| |  |||||||||| ||||||||||||||| | ||| ||| |||||||||||    
T  4060776 cacactttcttttttctctcatcttctctcttcctaatgcatggggtgtacaagggtgtatggaaataaaagatgtttatgtatcattactc 4060867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 6 - 85
Target Start/End: Original strand, 20700906 - 20700985
Alignment:
Q  6 cacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctat 85  Q
    |||||||| ||||| ||| ||||||||||||||||| ||| |  |||||||||| |||||||| ||||||||||||||||    
T  20700906 cacactttctctttcctctcctcttctctcttcctagtgcatggggtgtacaagggtgtatgggaataaagggtgtctat 20700985  T

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Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 26 - 99
Target Start/End: Complemental strand, 5574489 - 5574416
Alignment:
Q  26 ctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctatatatcattactcaa 99  Q
    ||||| |||||||||||||| |   ||||||||| |||||||| |||||||||||||||| |||||||||||||    
T  5574489 ctcttttctcttcctaatgcatggcgtgtacaagggtgtatgggaataaagggtgtctatgtatcattactcaa 5574416  T

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Target: chr2; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 21301514 - 21301434
Alignment:
Q  1 acaaacacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgt 81  Q
    ||||||||||||| |||||| ||  ||||||| |||||||| ||| |  |||||||| |||||||||||||||||||||||    
T  21301514 acaaacacactttctcttttatcttctcttctttcttcctagtgcatgaggtgtacatgagtgtatggaaataaagggtgt 21301434  T

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Target: chr2; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 99
Target Start/End: Complemental strand, 38882818 - 38882727
Alignment:
Q  8 cactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctatatatcattactcaa 99  Q
    |||||| |||||||||   |||| |||||||||||||| |  |||||||||| |||||||| |||||| ||| ||||| |||||||||||||    
T  38882818 cactttctcttttctcttatcttatctcttcctaatgcatggggtgtacaagggtgtatgggaataaatggtctctatgtatcattactcaa 38882727  T

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Target: chr2; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 33436114 - 33436020
Alignment:
Q  1 acaaacacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctatatatcattac 95  Q
    |||| |||||||| ||||| ||| | ||||||||||||||||||| |  |||||||||| |||||||  |||||| |||||||||  ||||||||    
T  33436114 acaagcacactttctctttcctctcatcttctctcttcctaatgcatgaggtgtacaagggtgtatgagaataaaaggtgtctatgcatcattac 33436020  T

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Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 9 - 81
Target Start/End: Original strand, 36168930 - 36169002
Alignment:
Q  9 actttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgt 81  Q
    ||||| ||||||||| ||| ||||||||||||||||  |  ||||||||||||||||||  ||||||||||||    
T  36168930 actttctcttttctctcctattctctcttcctaatgtatggggtgtacaagagtgtatgagaataaagggtgt 36169002  T

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Target: chr2; HSP #21
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 40613916 - 40613832
Alignment:
Q  1 acaaacacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctat 85  Q
    |||| |||||||| ||||||||| ||| |||| ||||| |||||  |  |||||||||| |||||||| ||||||||||||||||    
T  40613916 acaagcacactttctcttttctctcctattctttcttcataatgtatggggtgtacaagggtgtatgggaataaagggtgtctat 40613832  T

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Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 26 - 85
Target Start/End: Original strand, 43490232 - 43490291
Alignment:
Q  26 ctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctat 85  Q
    |||||||||||||||||| | || |||||||||| ||||||| || |||| |||||||||    
T  43490232 ctcttctctcttcctaatacatagggtgtacaagggtgtatgcaattaaaaggtgtctat 43490291  T

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Target: scaffold0321 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 10123 - 10027
Alignment:
Q  1 acaaacacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctatatatcattactc 97  Q
    |||| |||||||| ||||||||| ||||||||||||||||||||| || |||||||||| |||||||||||||| |||||||||| |||||||||||    
T  10123 acaagcacactttctcttttctctcctcttctctcttcctaatgcatagggtgtacaagggtgtatggaaataatgggtgtctatgtatcattactc 10027  T

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Target: chr1 (Bit Score: 62; Significance: 9e-27; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 41758891 - 41758988
Alignment:
Q  1 acaaacacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctatatatcattactca 98  Q
    ||||||||||||| ||||||||| ||||||||||||||||||||| |  |||||||||| |||||||  |||||||||||||||| ||||||||||||    
T  41758891 acaaacacactttctcttttctctcctcttctctcttcctaatgcatggggtgtacaagggtgtatgagaataaagggtgtctatgtatcattactca 41758988  T

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Target: chr1; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 27564749 - 27564653
Alignment:
Q  1 acaaacacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctatatatcattactc 97  Q
    |||| |||||||| ||||||||| ||||||||||||||||||||| |  |||||||||| |||||||| |||||||||||||||| |||||||||||    
T  27564749 acaagcacactttctcttttctctcctcttctctcttcctaatgcatggggtgtacaagggtgtatgggaataaagggtgtctatgtatcattactc 27564653  T

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Target: chr1; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 48716296 - 48716198
Alignment:
Q  1 acaaacacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctatatatcattactcaa 99  Q
    |||| |||||||| ||||||||  ||||||||||||||||||||| |  |||||||||| |||||||| |||||||||||||||| |||||||||||||    
T  48716296 acaagcacactttatcttttctttcctcttctctcttcctaatgcatggggtgtacaagggtgtatgggaataaagggtgtctatgtatcattactcaa 48716198  T

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Target: chr1; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 37649284 - 37649379
Alignment:
Q  1 acaaacacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctatatatcattact 96  Q
    |||| ||||||||  |||||||| ||||||||||||||||||||| |  |||||||||| |||||||| |||||||||||||||| ||||||||||    
T  37649284 acaagcacactttcccttttctctcctcttctctcttcctaatgcatggggtgtacaagggtgtatgggaataaagggtgtctatgtatcattact 37649379  T

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Target: chr1; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 38632335 - 38632253
Alignment:
Q  1 acaaacacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtct 83  Q
    |||| |||||||||||||||||| ||||||||||||||||||||| |  |||||||||| |||||||| ||||||||||||||    
T  38632335 acaagcacactttttcttttctctcctcttctctcttcctaatgcatggggtgtacaagggtgtatgggaataaagggtgtct 38632253  T

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Target: chr1; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 9474890 - 9474794
Alignment:
Q  1 acaaacacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctatatatcattactc 97  Q
    ||||||||||||| ||||||||| ||||||||||||||||||||| |  | |||||||| |||||||  ||||||| |||||||| |||||||||||    
T  9474890 acaaacacactttctcttttctctcctcttctctcttcctaatgcatgggatgtacaagggtgtatgagaataaagagtgtctatgtatcattactc 9474794  T

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Target: chr1; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 7 - 106
Target Start/End: Original strand, 26274524 - 26274620
Alignment:
Q  7 acactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctatatatcattactcaaaaaataa 106  Q
    |||||||||||||||||   ||||||||||||||||||| |  | || ||||| |||||||| |||||||||||||||| ||||||||||| ||||||||    
T  26274524 acactttttcttttctc---tcttctctcttcctaatgcatgagatgcacaagggtgtatgggaataaagggtgtctatgtatcattactctaaaaataa 26274620  T

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Target: chr1; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 47452334 - 47452238
Alignment:
Q  1 acaaacacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctatatatcattactc 97  Q
    |||| |||||||| ||||||||| ||||||||||||||||| ||| |  ||||||||||  ||||||| ||||||| |||||||| |||||||||||    
T  47452334 acaagcacactttctcttttctctcctcttctctcttcctattgcatggggtgtacaaggatgtatgggaataaagagtgtctatgtatcattactc 47452238  T

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Target: chr1; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 50630544 - 50630628
Alignment:
Q  1 acaaacacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctat 85  Q
    |||| |||||||| ||||||||| ||||||||||||||||||||| || |||||||||| |||||||  |||||| |||||||||    
T  50630544 acaagcacactttctcttttctctcctcttctctcttcctaatgcatagggtgtacaagggtgtatgagaataaatggtgtctat 50630628  T

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Target: chr1; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 43218 - 43314
Alignment:
Q  1 acaaacacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctatatatcattactc 97  Q
    |||| |||||||| ||||||||| |||| |||||||| ||||||| |  |||||||||||||||||   |||||||||| ||||| |||||||||||    
T  43218 acaagcacactttctcttttctctcctcctctctctttctaatgcatggggtgtacaagagtgtataagaataaagggtatctatgtatcattactc 43314  T

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Target: chr1; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 3000405 - 3000501
Alignment:
Q  1 acaaacacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctatatatcattactc 97  Q
    |||| |||||||| ||||||||| | |||||||||||||||||   |  |||||||||| |||||||||||||| || ||||||| |||||||||||    
T  3000405 acaagcacactttctcttttctctcatcttctctcttcctaatatatggggtgtacaagggtgtatggaaataatggatgtctatgtatcattactc 3000501  T

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Target: chr1; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 32813333 - 32813417
Alignment:
Q  1 acaaacacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctat 85  Q
    |||| |||||||| ||||||||| ||||||||||||||||||||  |  |||||||||| |||||||| |||||| |||||||||    
T  32813333 acaagcacactttctcttttctctcctcttctctcttcctaatgtatggggtgtacaagggtgtatgggaataaatggtgtctat 32813417  T

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Target: chr1; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 38595240 - 38595336
Alignment:
Q  1 acaaacacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctatatatcattactc 97  Q
    |||| |||||||| ||||||||| | |||||||||||||||||   |  |||||||||| |||||||||||||| || ||||||| |||||||||||    
T  38595240 acaagcacactttctcttttctctcatcttctctcttcctaatatatggggtgtacaagggtgtatggaaataatggatgtctatgtatcattactc 38595336  T

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Target: chr1; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 49811541 - 49811457
Alignment:
Q  1 acaaacacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctat 85  Q
    |||| |||||||| ||||||||| ||||||||||||||||||||  | ||||| ||||| |||||||  ||||||||||||||||    
T  49811541 acaagcacactttctcttttctctcctcttctctcttcctaatgtatgtggtgcacaagggtgtatgagaataaagggtgtctat 49811457  T

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Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 2582001 - 2582097
Alignment:
Q  1 acaaacacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctatatatcattactc 97  Q
    |||| |||||||| | ||||||| ||||||||||||||||||| | |  |||||||||| ||||||   |||||||||||| ||| |||||||||||    
T  2582001 acaagcacactttcttttttctctcctcttctctcttcctaatacatgaggtgtacaagggtgtattagaataaagggtgtttatgtatcattactc 2582097  T

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Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 51898697 - 51898617
Alignment:
Q  1 acaaacacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgt 81  Q
    |||| |||||||| | ||| ||| ||||||||||||||||| ||| |  |||||||||| |||||| ||||||||||||||    
T  51898697 acaagcacactttctatttcctctcctcttctctcttcctagtgcatggggtgtacaagggtgtatagaaataaagggtgt 51898617  T

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Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 7 - 88
Target Start/End: Complemental strand, 37926446 - 37926365
Alignment:
Q  7 acactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctatata 88  Q
    ||||||| |||||||||  |||||||||||||||||||  |  ||||||||||  ||||||  |||||| ||||||||||||    
T  37926446 acactttctcttttctcttctcttctctcttcctaatgtatggggtgtacaaggatgtatgtgaataaatggtgtctatata 37926365  T

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Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 8346402 - 8346299
Alignment:
Q  1 acaaacacactttttcttttctcccctcttct-ctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctatatatcattactcaa 99  Q
    |||| |||||||| ||||||||| |||||| | ||||||||||||| |   ||||||||  |||||||  |||||| ||| | ||| |||||||||||||    
T  8346402 acaagcacactttctcttttctctcctctttttctcttcctaatgcatggagtgtacaaaggtgtatgagaataaatggtatttatgtatcattactcaa 8346303  T
Q  100 aaaa 103  Q
    ||||    
T  8346302 aaaa 8346299  T

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Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 45044574 - 45044491
Alignment:
Q  1 acaaacacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtcta 84  Q
    ||||||||| ||| |||||||||  |||||||||||||||||||  |  |||||||||| |||||||  |||||| | ||||||    
T  45044574 acaaacacattttctcttttctcttctcttctctcttcctaatgtatggggtgtacaagggtgtatgagaataaatgatgtcta 45044491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 26 - 85
Target Start/End: Original strand, 47748553 - 47748612
Alignment:
Q  26 ctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctat 85  Q
    |||||||||||||||||| | |  |||||||||||||||||| || |||| |||||||||    
T  47748553 ctcttctctcttcctaatacatggggtgtacaagagtgtatgcaattaaaaggtgtctat 47748612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 85
Target Start/End: Complemental strand, 34340045 - 34339978
Alignment:
Q  17 ttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctat 85  Q
    |||||||  |||||||||||||| | ||| || ||||||||||||||| || ||||||| |||||||||    
T  34340045 ttttctcttctcttctctcttccaagtgcatagggtgtacaagagtgt-tgaaaataaaaggtgtctat 34339978  T

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Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 44454065 - 44454109
Alignment:
Q  1 acaaacacactttttcttttctcccctcttctctcttcctaatgc 45  Q
    |||| |||||||||||||| ||| | |||||||||||||||||||    
T  44454065 acaagcacactttttctttcctctcatcttctctcttcctaatgc 44454109  T

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Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 44548390 - 44548346
Alignment:
Q  1 acaaacacactttttcttttctcccctcttctctcttcctaatgc 45  Q
    |||| |||||||| ||||||||| | |||||||||||||||||||    
T  44548390 acaagcacactttctcttttctctcttcttctctcttcctaatgc 44548346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 4e-26; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 19329928 - 19330024
Alignment:
Q  1 acaaacacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctatatatcattactc 97  Q
    |||| |||||||| ||||||||| ||||||||||||||||||||| |  |||||||||| |||||||| |||||||||||||||| |||||||||||    
T  19329928 acaagcacactttctcttttctctcctcttctctcttcctaatgcatggggtgtacaagggtgtatgggaataaagggtgtctatgtatcattactc 19330024  T

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Target: chr7; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 38837303 - 38837399
Alignment:
Q  1 acaaacacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctatatatcattactc 97  Q
    |||| |||||||| ||||||||| ||||||||||||||||||||| |  | |||||||| ||||||||||||||||||||||||| |||||||||||    
T  38837303 acaagcacactttctcttttctctcctcttctctcttcctaatgcatgggatgtacaagggtgtatggaaataaagggtgtctatgtatcattactc 38837399  T

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Target: chr7; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 8080397 - 8080301
Alignment:
Q  1 acaaacacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctatatatcattactc 97  Q
    |||| |||||||| ||||||||| ||||||||||||||||| ||| |  |||||||||| |||||||| |||||||||||||||| |||||||||||    
T  8080397 acaagcacactttctcttttctctcctcttctctcttcctattgcatggggtgtacaagggtgtatgggaataaagggtgtctatgtatcattactc 8080301  T

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Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 4999528 - 4999432
Alignment:
Q  1 acaaacacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctatatatcattactc 97  Q
    ||||||||||||| |||||| || ||||||||||||||||||||| |  |||||||||| |||||||  |||||| ||||||||| |||||||||||    
T  4999528 acaaacacactttctcttttatctcctcttctctcttcctaatgcatggggtgtacaagggtgtatgagaataaaaggtgtctatgtatcattactc 4999432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 40957793 - 40957889
Alignment:
Q  1 acaaacacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctatatatcattactc 97  Q
    |||| |||||||| ||||||||| | ||||||||||||||||||| |  |||||||||| ||||||| |||||| |||||||||| |||||||||||    
T  40957793 acaagcacactttctcttttctctcatcttctctcttcctaatgcatggggtgtacaagggtgtatgaaaataatgggtgtctatgtatcattactc 40957889  T

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Target: chr7; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 32951507 - 32951411
Alignment:
Q  1 acaaacacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctatatatcattactc 97  Q
    |||| |||||||| ||||||||| ||||||||||||||||||| | |  |||||||||| |||||||  ||||| |||||||||| |||||||||||    
T  32951507 acaagcacactttctcttttctctcctcttctctcttcctaatacatggggtgtacaagggtgtatgagaataaggggtgtctatgtatcattactc 32951411  T

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Target: chr7; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 29 - 102
Target Start/End: Original strand, 3434666 - 3434739
Alignment:
Q  29 ttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctatatatcattactcaaaaa 102  Q
    ||||||||||||||||| |  ||||||||||  ||||||| |||||||||||||||| ||||||||||||||||    
T  3434666 ttctctcttcctaatgcatggggtgtacaaggctgtatgggaataaagggtgtctatgtatcattactcaaaaa 3434739  T

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Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 3694453 - 3694523
Alignment:
Q  1 acaaacacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaa 71  Q
    |||| |||||||| ||||||||| ||||||||||||||| ||||| |  ||||||||||||||||||||||    
T  3694453 acaagcacactttctcttttctctcctcttctctcttcccaatgcatggggtgtacaagagtgtatggaaa 3694523  T

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Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 97
Target Start/End: Original strand, 11044270 - 11044360
Alignment:
Q  7 acactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctatatatcattactc 97  Q
    ||||||| ||||| ||| | ||||||||||||||||||| |  |||||||||  ||||||| |||||||| |||||||| |||||||||||    
T  11044270 acactttctctttcctctcatcttctctcttcctaatgcatgaggtgtacaaaggtgtatgaaaataaagagtgtctatgtatcattactc 11044360  T

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Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 35137619 - 35137721
Alignment:
Q  1 acaaacacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctatatatcattactcaaa 100  Q
    ||||||||||||| ||||||||| ||||||||||||||||||||| |  | |||||||| |||||||  || ||| ||| |||||  |||||||||| ||    
T  35137619 acaaacacactttctcttttctctcctcttctctcttcctaatgcatgggatgtacaagggtgtatgagaacaaatggtatctatggatcattactctaa 35137718  T
Q  101 aaa 103  Q
    |||    
T  35137719 aaa 35137721  T

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Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 38267126 - 38267223
Alignment:
Q  1 acaaacacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctatatatcattactca 98  Q
    |||| |||||||| ||||||||| ||||||||||||||||||||| |  | ||||| |  ||||||||||||||| | | ||||| ||||||||||||    
T  38267126 acaagcacactttctcttttctctcctcttctctcttcctaatgcatgggatgtacgaaggtgtatggaaataaatgatatctatgtatcattactca 38267223  T

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Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 3784081 - 3784157
Alignment:
Q  1 acaaacacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagg 77  Q
    |||| |||||||| ||||||||| ||||||||||||||||||||| |  ||||||||||| ||||||  ||||||||    
T  3784081 acaagcacactttctcttttctctcctcttctctcttcctaatgcatggggtgtacaagaatgtatgtgaataaagg 3784157  T

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Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 31735963 - 31736047
Alignment:
Q  1 acaaacacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctat 85  Q
    |||| |||||||| ||||||||| ||||||||||||||||||||  |  |||||||||| |||||||| |||||| ||| |||||    
T  31735963 acaagcacactttctcttttctctcctcttctctcttcctaatgtatggggtgtacaagggtgtatgggaataaaaggtatctat 31736047  T

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Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 7389475 - 7389570
Alignment:
Q  1 acaaacacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctatatatcattactc 97  Q
    |||| |||||||| ||||||||| |||  |||||||||||||| | |  |||||||| | |||||||| |||||||| ||||||| |||||||||||    
T  7389475 acaagcacactttctcttttctctcctactctctcttcctaatacatggggtgtacagg-gtgtatgggaataaaggatgtctatgtatcattactc 7389570  T

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Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 35522962 - 35523042
Alignment:
Q  1 acaaacacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgt 81  Q
    |||| |||||||| ||||||||| | ||||||||||||||||||  |  |||||||||| |||||||| |||||| |||||    
T  35522962 acaagcacactttctcttttctctcttcttctctcttcctaatgtatggggtgtacaagggtgtatgggaataaatggtgt 35523042  T

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Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 6 - 85
Target Start/End: Complemental strand, 19436196 - 19436117
Alignment:
Q  6 cacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctat 85  Q
    |||||||| |||||||||  ||||| |||||||||||||| |  |||||||||| |||||||  |||||| |||||||||    
T  19436196 cacactttctcttttctcttctcttttctcttcctaatgcatggggtgtacaagggtgtatgagaataaatggtgtctat 19436117  T

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Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 26296744 - 26296813
Alignment:
Q  15 tcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtcta 84  Q
    ||||||||| |||||||||||||| |||||  |  |||||||||| ||||||||||||| | ||||||||    
T  26296744 tcttttctctcctcttctctcttcttaatgtatgaggtgtacaagggtgtatggaaatatatggtgtcta 26296813  T

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Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 26 - 97
Target Start/End: Original strand, 36362125 - 36362196
Alignment:
Q  26 ctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctatatatcattactc 97  Q
    ||||| |||||||||||| | |  | |||||||| |||||||  |||||||||||||||| |||||||||||    
T  36362125 ctcttttctcttcctaatacatgggatgtacaagggtgtatgagaataaagggtgtctatgtatcattactc 36362196  T

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Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 97
Target Start/End: Complemental strand, 36361888 - 36361843
Alignment:
Q  52 tgtacaagagtgtatggaaataaagggtgtctatatatcattactc 97  Q
    |||||||| |||||||  |||||||||||||||| |||||||||||    
T  36361888 tgtacaagggtgtatgagaataaagggtgtctatgtatcattactc 36361843  T

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Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 18207265 - 18207349
Alignment:
Q  1 acaaacacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctat 85  Q
    |||| |||||||| |||||  || ||||||||||||||||| ||  ||  ||||||||| |||||||  |||||||||| |||||    
T  18207265 acaagcacactttctctttcatctcctcttctctcttcctagtggatagagtgtacaagggtgtatgataataaagggtatctat 18207349  T

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Target: chr6 (Bit Score: 61; Significance: 4e-26; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 17598640 - 17598736
Alignment:
Q  1 acaaacacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctatatatcattactc 97  Q
    |||| |||||||| ||||||||| ||||||||||||||||||||| |  |||||||||| ||||||||||||||| ||||||||| |||||||||||    
T  17598640 acaagcacactttctcttttctctcctcttctctcttcctaatgcatggggtgtacaagggtgtatggaaataaaaggtgtctatgtatcattactc 17598736  T

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Target: chr6; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 11427704 - 11427800
Alignment:
Q  1 acaaacacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctatatatcattactc 97  Q
    |||| |||||||| ||||||||| ||||||||||||||||||||| |  |||||||||| |||||||  |||||||||||||||| |||||||||||    
T  11427704 acaagcacactttctcttttctctcctcttctctcttcctaatgcatggggtgtacaagggtgtatgagaataaagggtgtctatgtatcattactc 11427800  T

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Target: chr6; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 32869764 - 32869860
Alignment:
Q  1 acaaacacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctatatatcattactc 97  Q
    |||| |||||||| ||||||||| ||||||||||||||||||||| |  ||||||||||  ||||||| |||||||||||||||| |||||||||||    
T  32869764 acaagcacactttctcttttctctcctcttctctcttcctaatgcatggggtgtacaaggatgtatgggaataaagggtgtctatgtatcattactc 32869860  T

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Target: chr6; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 6 - 97
Target Start/End: Original strand, 29857918 - 29858009
Alignment:
Q  6 cacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctatatatcattactc 97  Q
    |||||||| |||||||||  |||||||||||||||||||| |  |||||||||| |||||||| |||||| ||||||||| |||||||||||    
T  29857918 cacactttctcttttctcttctcttctctcttcctaatgcatggggtgtacaagggtgtatgggaataaatggtgtctatgtatcattactc 29858009  T

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Target: chr6; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 22880672 - 22880576
Alignment:
Q  1 acaaacacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctatatatcattactc 97  Q
    |||| |||||||| ||||||||| ||||||||||||||||||| | |  |||||||||| |||||||| |||||| ||||| ||| |||||||||||    
T  22880672 acaagcacactttctcttttctctcctcttctctcttcctaatacatggggtgtacaagggtgtatgggaataaatggtgtatatgtatcattactc 22880576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 6 - 103
Target Start/End: Original strand, 946467 - 946564
Alignment:
Q  6 cacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctatatatcattactcaaaaaa 103  Q
    |||||||| ||||||||| ||||||||||||||||||||| |  | ||||||||| ||||||  ||||||  ||||| || |||||||||| ||||||    
T  946467 cacactttctcttttctctcctcttctctcttcctaatgcatgagatgtacaagaatgtatgacaataaaaagtgtcaatgtatcattactaaaaaaa 946564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 23128141 - 23128044
Alignment:
Q  1 acaaacacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaat-aaagggtgtctatatatcattactc 97  Q
    |||| |||||||| ||||||||| |||||| |||||||||||||| |  | |||||||| |||||||||||| ||||| | ||||| |||||||||||    
T  23128141 acaagcacactttctcttttctctcctcttttctcttcctaatgcatgggatgtacaagggtgtatggaaataaaaggttctctatgtatcattactc 23128044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 31110775 - 31110691
Alignment:
Q  1 acaaacacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctat 85  Q
    |||| |||||||| |||||||||  |||||||||||||||||||  |  |||||||||  ||||||||||||||||| |||||||    
T  31110775 acaagcacactttctcttttctctactcttctctcttcctaatgtatggggtgtacaaaggtgtatggaaataaaggatgtctat 31110691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 31976334 - 31976418
Alignment:
Q  1 acaaacacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctat 85  Q
    |||| |||||||| ||||||||| ||||||||||||||||||||  |  |||||||||| |||||||  |||||| |||||||||    
T  31976334 acaagcacactttctcttttctctcctcttctctcttcctaatgtatggggtgtacaagggtgtatgagaataaatggtgtctat 31976418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 15832663 - 15832756
Alignment:
Q  1 acaaacacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctatatatcatta 94  Q
    ||||| ||| ||| |||||| || |||||||| |||||||||||| |  |||||||||| |||||| | |||||||||||||||  ||||||||    
T  15832663 acaaatacattttctcttttttctcctcttctatcttcctaatgcatggggtgtacaagggtgtattggaataaagggtgtctacgtatcatta 15832756  T

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Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 6 - 97
Target Start/End: Complemental strand, 6209474 - 6209384
Alignment:
Q  6 cacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctatatatcattactc 97  Q
    |||||||| ||||||||| ||||||||||||||||||||| |  | |||||||   |||| || |||||||||| ||||| |||||||||||    
T  6209474 cacactttctcttttctctcctcttctctcttcctaatgcatgggatgtacaaagatgta-gggaataaagggtatctatgtatcattactc 6209384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 30870100 - 30870184
Alignment:
Q  1 acaaacacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctat 85  Q
    |||| |||| ||| ||||| ||| ||||||||||||| ||| |   || |||||||||  ||||||| |||||||||||||||||    
T  30870100 acaagcacattttctctttcctctcctcttctctctttctagtatatagggtgtacaaaggtgtatgaaaataaagggtgtctat 30870184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 4e-26; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 41236433 - 41236529
Alignment:
Q  1 acaaacacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctatatatcattactc 97  Q
    |||| |||||||| ||||||||| ||||||||||||||||||||| |  |||||||||| |||||||| |||||||||||||||| |||||||||||    
T  41236433 acaagcacactttctcttttctctcctcttctctcttcctaatgcatggggtgtacaagggtgtatgggaataaagggtgtctatgtatcattactc 41236529  T

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Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 42044381 - 42044285
Alignment:
Q  1 acaaacacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctatatatcattactc 97  Q
    |||| |||||||| ||||||||| ||||||||||||||||||||| |  | |||||||| ||||||||||||||||||||||||| |||||||||||    
T  42044381 acaagcacactttctcttttctctcctcttctctcttcctaatgcatgggatgtacaagggtgtatggaaataaagggtgtctatgtatcattactc 42044285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 6034130 - 6034227
Alignment:
Q  1 acaaacacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctatatatcattactca 98  Q
    |||| |||||||| ||||||||| ||||||||||||||||||||| |  |||||||||| |||||||  |||||| ||||||||| ||||||||||||    
T  6034130 acaagcacactttctcttttctctcctcttctctcttcctaatgcatggggtgtacaagggtgtatgagaataaaaggtgtctatgtatcattactca 6034227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 48183063 - 48182966
Alignment:
Q  1 acaaacacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctatatatcattactca 98  Q
    |||| |||||||| ||||||||| |||||||||||||| |||||| |  |||||||||| |||||||  |||||||||||||||| ||||||||||||    
T  48183063 acaagcacactttctcttttctctcctcttctctcttcttaatgcatggggtgtacaagggtgtatgagaataaagggtgtctatgtatcattactca 48182966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 24995121 - 24995025
Alignment:
Q  1 acaaacacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctatatatcattactc 97  Q
    |||| |||| ||| ||||||||| |||||||||||||| |||||| |  |||||||||  |||||||| |||||||||||||||| |||||||||||    
T  24995121 acaagcacattttctcttttctctcctcttctctcttcttaatgcatggggtgtacaatggtgtatgggaataaagggtgtctatgtatcattactc 24995025  T

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Target: chr4; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 29239972 - 29240056
Alignment:
Q  1 acaaacacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctat 85  Q
    |||| |||||||| ||||| ||| ||||||||||||||||| ||| |  ||||||||||||||||||| ||||||||||||||||    
T  29239972 acaagcacactttctctttcctctcctcttctctcttcctagtgcatggggtgtacaagagtgtatgggaataaagggtgtctat 29240056  T

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Target: chr4; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 11511476 - 11511381
Alignment:
Q  1 acaaacacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctatatatcattactc 97  Q
    |||| |||||||| |||||||||  ||||||||||||| |||||| |  |||||||||| |||||||||||||||  |||||||| |||||||||||    
T  11511476 acaagcacactttctcttttctcttctcttctctcttcttaatgcatgaggtgtacaagggtgtatggaaataaa-tgtgtctatgtatcattactc 11511381  T

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Target: chr4; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 23608321 - 23608417
Alignment:
Q  1 acaaacacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctatatatcattactc 97  Q
    |||| |||||||| |||||| || ||||||||||||||||||||| |  |||||||| |  ||||||| |||||||| ||||||| |||||||||||    
T  23608321 acaagcacactttctcttttatctcctcttctctcttcctaatgcatgaggtgtacagggatgtatgggaataaaggatgtctatgtatcattactc 23608417  T

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Target: chr4; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 50052442 - 50052358
Alignment:
Q  1 acaaacacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctat 85  Q
    |||| |||||||| ||||| ||| ||||||||||||||||| ||| || |||||||||  |||||||| ||||||||||||||||    
T  50052442 acaagcacactttctctttcctctcctcttctctcttcctagtgcataaggtgtacaaaggtgtatgggaataaagggtgtctat 50052358  T

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Target: chr4; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 480461 - 480382
Alignment:
Q  1 acaaacacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtg 80  Q
    |||| |||||||| ||||||||| ||||||||||||||||||||| |  |||||||||  |||||||||||||| |||||    
T  480461 acaagcacactttctcttttctctcctcttctctcttcctaatgcatggggtgtacaaaggtgtatggaaataatgggtg 480382  T

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Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 54473547 - 54473453
Alignment:
Q  1 acaaacacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctatatatcattac 95  Q
    |||| |||||||| ||||||||| ||||||||||||||||||| | |   ||||||||| |||||||| ||||||||||||  || |||||||||    
T  54473547 acaagcacactttatcttttctctcctcttctctcttcctaatacatggagtgtacaagggtgtatgggaataaagggtgttcatgtatcattac 54473453  T

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Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 31910278 - 31910362
Alignment:
Q  1 acaaacacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctat 85  Q
    |||| |||||||| ||||||||| | ||||||||||||||||||  |  | ||||||||||||||||| |||||| |||||||||    
T  31910278 acaagcacactttctcttttctctcatcttctctcttcctaatgtatgggatgtacaagagtgtatgggaataaatggtgtctat 31910362  T

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Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 9 - 98
Target Start/End: Complemental strand, 53352572 - 53352491
Alignment:
Q  9 actttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctatatatcattactca 98  Q
    ||||| ||||||||| |||||||||||||||||        |||||||||| ||||||| ||||||||||||||||| ||||||||||||    
T  53352572 actttctcttttctctcctcttctctcttccta--------ggtgtacaagggtgtatgaaaataaagggtgtctatgtatcattactca 53352491  T

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Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 40574865 - 40574949
Alignment:
Q  1 acaaacacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctat 85  Q
    |||| |||||||| ||||||||| |||||||||||||||||||   |  |||||||||| |||||||  |||||| |||||||||    
T  40574865 acaagcacactttctcttttctctcctcttctctcttcctaatatatggggtgtacaagggtgtatgagaataaaaggtgtctat 40574949  T

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Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 41823968 - 41824052
Alignment:
Q  1 acaaacacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctat 85  Q
    |||| |||||||| ||||||||| | ||||||||||||||||||| |  |||||||||  |||||||  |||||| |||||||||    
T  41823968 acaagcacactttctcttttctctcttcttctctcttcctaatgcatgaggtgtacaaaggtgtatgagaataaatggtgtctat 41824052  T

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Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 29234259 - 29234215
Alignment:
Q  1 acaaacacactttttcttttctcccctcttctctcttcctaatgc 45  Q
    |||| |||||||| ||||||||| |||||||||||||||||||||    
T  29234259 acaagcacactttctcttttctctcctcttctctcttcctaatgc 29234215  T

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Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 50526161 - 50526105
Alignment:
Q  25 cctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgt 81  Q
    ||||||||||||||||| ||| |  |||||||||| |||||| ||||||||||||||    
T  50526161 cctcttctctcttcctagtgcatggggtgtacaagggtgtatagaaataaagggtgt 50526105  T

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Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 26 - 85
Target Start/End: Complemental strand, 29589729 - 29589670
Alignment:
Q  26 ctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctat 85  Q
    |||||||||||||||||| | |  |||||||||||||||||| || |||| |||||||||    
T  29589729 ctcttctctcttcctaatacatgaggtgtacaagagtgtatgcaattaaaaggtgtctat 29589670  T

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Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 85
Target Start/End: Complemental strand, 29547967 - 29547889
Alignment:
Q  7 acactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctat 85  Q
    |||||||||||||  ||  |||||||||||||||||| | |  |||||||||| ||||||| || |||| |||||||||    
T  29547967 acactttttctttcttcttctcttctctcttcctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctat 29547889  T

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Target: chr3 (Bit Score: 61; Significance: 4e-26; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 54868909 - 54868813
Alignment:
Q  1 acaaacacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctatatatcattactc 97  Q
    |||| |||||||| ||||||||| | ||||||||||||||||||| || |||||||||| ||||||||||||||| ||||||||| |||||||||||    
T  54868909 acaatcacactttctcttttctctcatcttctctcttcctaatgcatagggtgtacaagggtgtatggaaataaaaggtgtctatgtatcattactc 54868813  T

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Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 53982097 - 53982194
Alignment:
Q  1 acaaacacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctatatatcattactca 98  Q
    |||| |||||||| ||||||||| ||||||||||||||||||||| |  ||||||||||  ||||||| |||||||||||||||| ||||||||||||    
T  53982097 acaagcacactttctcttttctctcctcttctctcttcctaatgcatggggtgtacaaggttgtatgggaataaagggtgtctatgtatcattactca 53982194  T

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Target: chr3; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 33644286 - 33644382
Alignment:
Q  1 acaaacacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctatatatcattactc 97  Q
    |||| |||||||| ||||||||| ||||||||||||||||||||| |  |||||| ||| |||||||| |||||||||||||||| |||||||||||    
T  33644286 acaagcacactttctcttttctctcctcttctctcttcctaatgcatggggtgtataagggtgtatgggaataaagggtgtctatgtatcattactc 33644382  T

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Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 31456775 - 31456877
Alignment:
Q  1 acaaacacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctatatatcattactcaaa 100  Q
    |||| |||||||| ||||||||| |||||| |||||||||||||| |  |||||||||| ||| |||| |||||||||||| ||| ||||||||||||||    
T  31456775 acaagcacactttctcttttctctcctcttttctcttcctaatgcatggggtgtacaagggtgcatgggaataaagggtgtttatgtatcattactcaaa 31456874  T
Q  101 aaa 103  Q
    |||    
T  31456875 aaa 31456877  T

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Target: chr3; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 6 - 96
Target Start/End: Complemental strand, 36707437 - 36707347
Alignment:
Q  6 cacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctatatatcattact 96  Q
    |||||||| ||||||||| ||||||||||||||||||||| |  ||||||||||| ||||||| |||||| ||||||||| ||||||||||    
T  36707437 cacactttctcttttctctcctcttctctcttcctaatgcatgaggtgtacaagaatgtatgggaataaaaggtgtctatgtatcattact 36707347  T

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Target: chr3; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 49607500 - 49607596
Alignment:
Q  1 acaaacacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctatatatcattactc 97  Q
    |||| |||||||| ||||||||| |||||| |||||||||||||| |   ||||||||| |||||||| |||||||||||||||| |||||||||||    
T  49607500 acaagcacactttctcttttctctcctcttttctcttcctaatgcatgacgtgtacaagggtgtatgggaataaagggtgtctatgtatcattactc 49607596  T

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Target: chr3; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 52629386 - 52629482
Alignment:
Q  1 acaaacacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctatatatcattactc 97  Q
    |||| |||||||| ||||||||| | ||||||||||||||||||| |  | |||||||| |||||||||||||| |||||||||| |||||||||||    
T  52629386 acaagcacactttctcttttctctcatcttctctcttcctaatgcatgggatgtacaagggtgtatggaaataatgggtgtctatgtatcattactc 52629482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 41189778 - 41189694
Alignment:
Q  1 acaaacacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctat 85  Q
    |||| |||||||| ||||||||| |||||||| |||||||||||  |   |||||||||||||||||||||||||||||||||||    
T  41189778 acaagcacactttctcttttctctcctcttctttcttcctaatgtatggagtgtacaagagtgtatggaaataaagggtgtctat 41189694  T

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Target: chr3; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 26141546 - 26141460
Alignment:
Q  1 acaaacacactttttcttttctcccctcttct--ctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctat 85  Q
    |||| |||||||| ||||||||| ||||||||  ||||||||||||  |  ||||||||||||||||||||||||||||||||||||    
T  26141546 acaagcacactttctcttttctctcctcttctttctcttcctaatgtatggggtgtacaagagtgtatggaaataaagggtgtctat 26141460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 9563085 - 9563179
Alignment:
Q  1 acaaacacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctatatatcattac 95  Q
    ||||||||||||| ||| ||||| ||||||||||||||||||||| |  | |||||||  |||||||| |||||||||| ||||| |||||||||    
T  9563085 acaaacacactttctctcttctctcctcttctctcttcctaatgcatgagttgtacaaaggtgtatgggaataaagggtatctatgtatcattac 9563179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 6 - 85
Target Start/End: Complemental strand, 11347931 - 11347852
Alignment:
Q  6 cacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctat 85  Q
    |||||||| ||||||||| ||||||||||||||||||||  |  |||||| ||| |||||||| ||||||||||||||||    
T  11347931 cacactttctcttttctctcctcttctctcttcctaatgtatggggtgtataagggtgtatgggaataaagggtgtctat 11347852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 51419374 - 51419294
Alignment:
Q  1 acaaacacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgt 81  Q
    |||| |||||||| ||||||||| ||| ||||||||||||||||  |  |||||||||| ||||||||||||||| |||||    
T  51419374 acaagcacactttctcttttctctcctattctctcttcctaatgtatggggtgtacaagggtgtatggaaataaaaggtgt 51419294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 26 - 97
Target Start/End: Complemental strand, 11095356 - 11095285
Alignment:
Q  26 ctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctatatatcattactc 97  Q
    ||||| |||||||||||||| |  |||||||||| |||||||  |||||||||||||||| |||||||||||    
T  11095356 ctcttttctcttcctaatgcatcgggtgtacaagggtgtatgagaataaagggtgtctatgtatcattactc 11095285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 3 - 84
Target Start/End: Complemental strand, 33118863 - 33118781
Alignment:
Q  3 aaacacactttttcttttctcccctc-ttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtcta 84  Q
    ||||||||||| ||||| ||| |||| |||||||| |||| ||| |  |||||||||| ||||||||||||||||||||||||    
T  33118863 aaacacactttctctttcctctcctccttctctctccctagtgcatggggtgtacaagggtgtatggaaataaagggtgtcta 33118781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 8076479 - 8076563
Alignment:
Q  1 acaaacacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctat 85  Q
    |||| |||||||| ||||| ||| ||||||||||||||||| ||| |  ||||||||| ||||||||  |||||| |||||||||    
T  8076479 acaagcacactttctctttcctctcctcttctctcttcctagtgcatggggtgtacaaaagtgtatgagaataaatggtgtctat 8076563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 17470491 - 17470587
Alignment:
Q  1 acaaacacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctatatatcattactc 97  Q
    |||| |||||||| ||||||||| | ||||||||||||||||||| |  | |||||||   ||||||  |||||| ||||||||| |||||||||||    
T  17470491 acaagcacactttctcttttctctcatcttctctcttcctaatgcatgggatgtacaaatatgtatgagaataaatggtgtctatgtatcattactc 17470587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 20764929 - 20764845
Alignment:
Q  1 acaaacacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctat 85  Q
    |||| |||||||| ||||||||| | ||||||||||||||||||  |  |||||||||| |||||||  |||||| |||||||||    
T  20764929 acaagcacactttctcttttctctcatcttctctcttcctaatgtatggggtgtacaagggtgtatgagaataaatggtgtctat 20764845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 47531951 - 47532031
Alignment:
Q  1 acaaacacactttttcttttctcccctcttctctcttcctaatgcgtatgg--tgtacaagagtgtatggaaataaagggtgt 81  Q
    |||| |||||||| ||||||||| ||| |||||||||||||||  ||||||  |||||||| |||||||| ||||||||||||    
T  47531951 acaagcacactttctcttttctctcctattctctcttcctaat--gtatggaatgtacaagtgtgtatgggaataaagggtgt 47532031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 29 - 97
Target Start/End: Complemental strand, 48587087 - 48587019
Alignment:
Q  29 ttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctatatatcattactc 97  Q
    ||||||||||||||||| |  | |||||||| || ||||| |||||||||||||||| |||||||||||    
T  48587087 ttctctcttcctaatgcatgggatgtacaagggtatatgggaataaagggtgtctatgtatcattactc 48587019  T

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Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 24699968 - 24699928
Alignment:
Q  1 acaaacacactttttcttttctcccctcttctctcttccta 41  Q
    ||||||||||||| ||||| ||| |||||||||||||||||    
T  24699968 acaaacacactttctctttcctctcctcttctctcttccta 24699928  T

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Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 35785285 - 35785382
Alignment:
Q  1 acaaacacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctatatatcattactca 98  Q
    |||| |||||||| ||||||||| | ||||||||||||||||||| |  |||||||||| ||||||||||||||| ||||||||| ||||||||||||    
T  35785285 acaatcacactttctcttttctctcatcttctctcttcctaatgcatggggtgtacaagggtgtatggaaataaaaggtgtctatgtatcattactca 35785382  T

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Target: chr5; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 18520898 - 18520802
Alignment:
Q  1 acaaacacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctatatatcattactc 97  Q
    |||| |||||||| |||||| || ||||||||||||||||||||| |  |||||||||| ||||||| ||||||||||||||||| |||||||||||    
T  18520898 acaagcacactttctcttttatctcctcttctctcttcctaatgcatgaggtgtacaagggtgtatgaaaataaagggtgtctatgtatcattactc 18520802  T

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Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 36732956 - 36732870
Alignment:
Q  1 acaaacacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctatat 87  Q
    |||| |||||||| ||||||||| ||||||||||||||||||||| |  |||||||||| |||||||| ||||||||||||||||||    
T  36732956 acaagcacactttctcttttctctcctcttctctcttcctaatgcatgaggtgtacaagggtgtatgggaataaagggtgtctatat 36732870  T

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Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 2740360 - 2740456
Alignment:
Q  1 acaaacacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctatatatcattactc 97  Q
    |||| |||||||| ||||||||| || |||||||||||||||||| |  | |||||||| |||||||| |||||||||||||||| |||||||||||    
T  2740360 acaagcacactttctcttttctctccccttctctcttcctaatgcatgggatgtacaagggtgtatgggaataaagggtgtctatgtatcattactc 2740456  T

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Target: chr5; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 33149652 - 33149556
Alignment:
Q  1 acaaacacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctatatatcattactc 97  Q
    |||| |||||||| ||||||||| ||||||||||||||||||||| |  |||||||||| ||||| |  |||||||||||||||| |||||||||||    
T  33149652 acaagcacactttctcttttctctcctcttctctcttcctaatgcatggggtgtacaagggtgtacgagaataaagggtgtctatgtatcattactc 33149556  T

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Target: chr5; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 14831900 - 14831996
Alignment:
Q  1 acaaacacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctatatatcattactc 97  Q
    |||| |||||||| | |||| || ||||||||||||||||||||| |  ||||||||||  ||||||| |||||||||||||||| |||||||||||    
T  14831900 acaagcacactttcttttttttctcctcttctctcttcctaatgcatggggtgtacaaggatgtatgggaataaagggtgtctatgtatcattactc 14831996  T

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Target: chr5; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 40145493 - 40145589
Alignment:
Q  1 acaaacacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctatatatcattactc 97  Q
    |||| |||||||| ||||||||| |||||||||||||||||||||    |||||||||| || ||||  |||||||||||||||| |||||||||||    
T  40145493 acaagcacactttctcttttctctcctcttctctcttcctaatgcacgaggtgtacaagggtatatgagaataaagggtgtctatgtatcattactc 40145589  T

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Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 6679784 - 6679868
Alignment:
Q  1 acaaacacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctat 85  Q
    ||||||||| ||| ||||||||| ||||||||||||||||||||  || |||||||||| |||||||  |||||| | |||||||    
T  6679784 acaaacacattttctcttttctctcctcttctctcttcctaatgtatagggtgtacaagggtgtatgacaataaatgatgtctat 6679868  T

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Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 98
Target Start/End: Original strand, 31132448 - 31132517
Alignment:
Q  29 ttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctatatatcattactca 98  Q
    ||||||||| ||||||| |  |||||||||| ||||||| ||||||||||||| ||| ||||||||||||    
T  31132448 ttctctctttctaatgcatgaggtgtacaagggtgtatgaaaataaagggtgtttatgtatcattactca 31132517  T

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Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 13811738 - 13811822
Alignment:
Q  1 acaaacacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctat 85  Q
    |||| |||||||| |||| |||| ||||||||||||||||||||| |  | ||||||||  ||||||| |||||| |||||||||    
T  13811738 acaagcacactttctcttctctctcctcttctctcttcctaatgcatgggatgtacaaggatgtatgggaataaatggtgtctat 13811822  T

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Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 15409624 - 15409544
Alignment:
Q  1 acaaacacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgt 81  Q
    |||| |||||| | ||||||||| ||||||||||||||||||||  |  |||||||||| |||||||  ||||||||||||    
T  15409624 acaagcacactctctcttttctctcctcttctctcttcctaatgtatggggtgtacaagggtgtatgcgaataaagggtgt 15409544  T

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Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 35943906 - 35943822
Alignment:
Q  1 acaaacacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctat 85  Q
    |||| |||||||| ||||| ||| |||||| |||||||||| ||| |  |||||||||| |||||||||||||||  ||||||||    
T  35943906 acaagcacactttctctttcctctcctcttttctcttcctagtgcatggggtgtacaagggtgtatggaaataaaatgtgtctat 35943822  T

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Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 51 - 97
Target Start/End: Complemental strand, 16115296 - 16115250
Alignment:
Q  51 gtgtacaagagtgtatggaaataaagggtgtctatatatcattactc 97  Q
    |||||||||||||||||  |||||||||||||||| |||||||||||    
T  16115296 gtgtacaagagtgtatgagaataaagggtgtctatgtatcattactc 16115250  T

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Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 26720602 - 26720694
Alignment:
Q  1 acaaacacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctatatatcatt 93  Q
    |||| |||||||| |||||||||  |||||||||||||||||||  |  ||||||| || |||||||  |||||| | |||||||||| ||||    
T  26720602 acaagcacactttctcttttctcttctcttctctcttcctaatgtatggggtgtactagggtgtatgagaataaatgatgtctatataacatt 26720694  T

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Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 26990351 - 26990443
Alignment:
Q  1 acaaacacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctatatatcatt 93  Q
    |||| |||||||| |||||||||  |||||||||||||||||||  |  ||||||| || |||||||  |||||| | |||||||||| ||||    
T  26990351 acaagcacactttctcttttctcttctcttctctcttcctaatgtatggggtgtactagggtgtatgagaataaatgatgtctatataacatt 26990443  T

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Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 28177861 - 28177904
Alignment:
Q  1 acaaacacactttttcttttctcccctcttctctcttcctaatg 44  Q
    ||||||||||||| ||||||||| ||||||| ||||||||||||    
T  28177861 acaaacacactttctcttttctctcctcttccctcttcctaatg 28177904  T

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Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 31009074 - 31009158
Alignment:
Q  1 acaaacacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctat 85  Q
    |||| |||||||| | ||| |||  |||||||||||||||| ||| |  |||||||||  |||||||  ||||||||||||||||    
T  31009074 acaagcacactttctatttcctcttctcttctctcttcctagtgcatggggtgtacaaaggtgtatgagaataaagggtgtctat 31009158  T

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Target: scaffold0237 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 6 - 97
Target Start/End: Original strand, 4120 - 4211
Alignment:
Q  6 cacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgtctatatatcattactc 97  Q
    |||||||| |||||||||  |||||||||||||||||||| |  |||||||||| |||||||| |||||| ||||||||| |||||||||||    
T  4120 cacactttctcttttctcttctcttctctcttcctaatgcatggggtgtacaagggtgtatgggaataaatggtgtctatgtatcattactc 4211  T

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Target: scaffold1268 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold1268
Description:

Target: scaffold1268; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 943 - 863
Alignment:
Q  1 acaaacacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgt 81  Q
    |||| |||||||| ||||| ||| ||||||||||||||||| ||| |  ||||||||||||||||||| ||||||||||||    
T  943 acaagcacactttctctttcctctcctcttctctcttcctagtgcatggggtgtacaagagtgtatgggaataaagggtgt 863  T

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Target: scaffold1267 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold1267
Description:

Target: scaffold1267; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 943 - 863
Alignment:
Q  1 acaaacacactttttcttttctcccctcttctctcttcctaatgcgtatggtgtacaagagtgtatggaaataaagggtgt 81  Q
    |||| |||||||| ||||| ||| ||||||||||||||||| ||| |  ||||||||||||||||||| ||||||||||||    
T  943 acaagcacactttctctttcctctcctcttctctcttcctagtgcatggggtgtacaagagtgtatgggaataaagggtgt 863  T

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