View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4017_low_3 (Length: 810)
Name: NF4017_low_3
Description: NF4017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4017_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 395 - 795
Target Start/End: Complemental strand, 30921329 - 30920948
Alignment:
| Q |
395 |
agtgatcaaatattaagaaaccaagcatgacannnnnnngtaattgtgttgctcttacataaaagacctacacctattatcttattaactaaggcaaagc |
494 |
Q |
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| T |
30921329 |
agtgatcaaatattaagaaaccaatcatgacatttttttgtaactgt--tgctcttacataaaagacttacacctattatcttattaactaaggcaaagc |
30921232 |
T |
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| Q |
495 |
taaagagaccaatacatgtacatattccattagttgtctcacatcaatagatgtcttaagaaattcttgaatgactcacttgaccaaaagaagaaagaaa |
594 |
Q |
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| T |
30921231 |
taaagagaccaatacatgtacatattccattagttgtct-----------------taagaaattcttgaatgactcacttgaccaaaagaagaaagaaa |
30921149 |
T |
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| Q |
595 |
ttcttgaatgatgagagacctgtttgctgttaggtggcataaaaacgtgcaagatatactataatgataccttaagattcccccatacacatccatgatt |
694 |
Q |
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| T |
30921148 |
ttcttgaatgatgagagacctgtttgctgttaggtggcataaaaacgtgcaagatatactataatgataccttaagattcccccatacacatccatgatt |
30921049 |
T |
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| Q |
695 |
aataaaaaggaaatttgtcttaagattaaaagttaaacacttctcaatgagggacattcatatcaatcaagtaatgaaaaataacttttcggatacaatt |
794 |
Q |
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| T |
30921048 |
aataaaaaggaaatttgtcttaagattaaaagttaaacacttctcaatgagggacattcatatcaatcaagtaatgaaaaataacttttcggatacaatt |
30920949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 11 - 244
Target Start/End: Complemental strand, 30921756 - 30921523
Alignment:
| Q |
11 |
caaaggtaggtcaaagacaacaatgttgatattaattggacagagtcagagtccacgatagacaaatccacagtaggcatgaagtcccacattgccaaaa |
110 |
Q |
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| T |
30921756 |
caaaggtaggtcaaagacaacaatgttgatattaattggacagagtcagagtccacgatagacaaatccacagtaggcatgaagtcccacattgccaaaa |
30921657 |
T |
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| Q |
111 |
ttttcgaacattttttggctttgagataatcaatagcttcttccaacctctctcccttgcaaagaacttctatcaagctagtacttgtgaatgggttttt |
210 |
Q |
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| T |
30921656 |
ttttcgaacattttttggctttgagataatcaatagcttcttccaacctctctcccttgcaaagaacttctatcaagctagtacttgtgaatgggttttt |
30921557 |
T |
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| Q |
211 |
cttcgtctaatttaaggaaaatgaaacatgatag |
244 |
Q |
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| T |
30921556 |
cttcgtctaatgtaaggaaaatgaaacatgatag |
30921523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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