View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4017_low_37 (Length: 285)
Name: NF4017_low_37
Description: NF4017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4017_low_37 |
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Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 37410976 - 37411250
Alignment:
| Q |
1 |
agtaaagagagtgaaatagaatgaaatagtcgataaaaacatgaatgttatcttggtttattttattccatttcattccaccctataccagcaattcaaa |
100 |
Q |
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| T |
37410976 |
agtaaagagagtgaaatagaatgaaatagtcgataaaaacatgaatgttatcttggtttattttattccatttcattccaccctataccagcaattcaaa |
37411075 |
T |
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| Q |
101 |
cataccgattcgttggaaaaagagattgatgaacttatttgtggtttgat-tagacaggccttaagtggaaaagaagttacaggtgccttgacttatagt |
199 |
Q |
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| T |
37411076 |
cataccgattcgttggaaaaagagattgatgaacttatttgtggtttgatatagacaggccttaagtggaaaagaagttacaggtgccttgacttatagt |
37411175 |
T |
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| Q |
200 |
ttcatccaaacagtgcaaaatgaacctggattgacctatggtcacttgcttagtaccatgcgttctaccattcat |
274 |
Q |
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| T |
37411176 |
ttcatccaaacagtgcaaaatgaacctggattgacctatggtcacttgcttagtaccatgcgttctaccattcat |
37411250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 272
Target Start/End: Complemental strand, 1712453 - 1712363
Alignment:
| Q |
182 |
ggtgccttgacttatagtttcatccaaacagtgcaaaatgaacctggattgacctatggtcacttgcttagtaccatgcgttctaccattc |
272 |
Q |
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| T |
1712453 |
ggtgccttgacttacagtttcatccaagccatgcaagttgaacgtagattgacttatggccaattgcttaatgccatgcgttctacgattc |
1712363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 106
Target Start/End: Original strand, 14669948 - 14669990
Alignment:
| Q |
64 |
tattccatttcattccaccctataccagcaattcaaacatacc |
106 |
Q |
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| T |
14669948 |
tattccatttcattccaccctataccacaaatccaaacatacc |
14669990 |
T |
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