View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4017_low_42 (Length: 250)
Name: NF4017_low_42
Description: NF4017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4017_low_42 |
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Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 49993202 - 49992956
Alignment:
| Q |
1 |
tataaatttggtgggaggagtggagggtgtgtggcaattcttggtgctgcaaaattggttttgggttttgttttgggaagttcattggctcattttttca |
100 |
Q |
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| T |
49993202 |
tataaatttggtgggaggagtggagggtgtgtggcaattcttggtgctgcaaaattggttttgggttttgttttgggaagttcattggctcattttttca |
49993103 |
T |
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| Q |
101 |
aacagtttcctgtgggaattttaggggtgttgttgttgtttgctgggattgaattagctatggcttgtagggatatgaataacaaagaggattcttttgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49993102 |
aacagtttcctgtgggaattttaggggtgttgttgttgtttgctgggattgaattagctatggcttgtagggatatgaataacaaagaggattcttttgt |
49993003 |
T |
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| Q |
201 |
tatgcttctttgtactgctgtttctcttgtggggtct-gtgctgctc |
246 |
Q |
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| T |
49993002 |
tatgcttctttgtactgctgtttctcttgtggggtctagtgctgctc |
49992956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 25798045 - 25797987
Alignment:
| Q |
1 |
tataaatttggtgggaggagtggagggtgtgtggcaattcttggtgctgcaaaattggt |
59 |
Q |
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| T |
25798045 |
tataaatttggtggaagaagtggagggtgtgtggcacttcttggtgcaggaaaattggt |
25797987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 1875771 - 1875970
Alignment:
| Q |
1 |
tataaatttggtgggaggagtggagggtgtgtggcaattcttggtgctgcaaaattggttttgggttttgttttgggaagttcattggctcattttttca |
100 |
Q |
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| T |
1875771 |
tataaatttggtggaaggagtggagggtgtgtggcacttcttggtgttgcaaaattggtattgggattggtgttaggaacttctttggcacacattttaa |
1875870 |
T |
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| Q |
101 |
aacagtttcctgtgggaattttaggggtgttgttgttgtttgctgggattgaattagctatggcttgtagggatatgaataacaaagaggattcttttgt |
200 |
Q |
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|||||||| || || |||||||| || ||| | ||||||||||| ||||| | |||||| | |||||||||||||| |||||| ||||| ||||| |
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| T |
1875871 |
tgcagtttccagttgggattttaggtgttttgcttttgtttgctggtcttgaacttgctatgtgtgctagggatatgaatagcaaagaagattcctttgt |
1875970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 1808167 - 1808366
Alignment:
| Q |
1 |
tataaatttggtgggaggagtggagggtgtgtggcaattcttggtgctgcaaaattggttttgggttttgttttgggaagttcattggctcattttttca |
100 |
Q |
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||||||||||| || ||||||||||||||||| ||| |||||||| |||||||||||| ||||| || ||||| |||| ||| ||||| || |||| |
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| T |
1808167 |
tataaatttggaggaaggagtggagggtgtgttgcacttcttggttttgcaaaattggtattgggattggttttaggaacttctttggcacacattttgc |
1808266 |
T |
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| Q |
101 |
aacagtttcctgtgggaattttaggggtgttgttgttgtttgctgggattgaattagctatggcttgtagggatatgaataacaaagaggattcttttgt |
200 |
Q |
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|||| ||||| || || |||||||| ||||| | ||||||||||| |||||| | |||||| | |||||||||||||| ||||| ||||||||||| |
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| T |
1808267 |
aacaatttccagttgggattttaggtgtgttacttttgtttgctggtattgaacttgctatgtgtgctagggatatgaatagtaaagaagattcttttgt |
1808366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 103 - 225
Target Start/End: Original strand, 2862338 - 2862460
Alignment:
| Q |
103 |
cagtttcctgtgggaattttaggggtgttgttgttgtttgctgggattgaattagctatggcttgtagggatatgaataacaaagaggattcttttgtta |
202 |
Q |
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||||||||| | || || |||||||||||| | |||||||||||||||||||| |||||||||| || |||||||||| ||| | || |||||| ||| |
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| T |
2862338 |
cagtttcctattggcatattaggggtgttgcttttgtttgctgggattgaattggctatggcttctaaagatatgaatagtaaacaagagtcttttatta |
2862437 |
T |
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| Q |
203 |
tgcttctttgtactgctgtttct |
225 |
Q |
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|| || ||||| ||||||||||| |
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| T |
2862438 |
tgtttgtttgtgctgctgtttct |
2862460 |
T |
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