View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4017_low_45 (Length: 247)
Name: NF4017_low_45
Description: NF4017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4017_low_45 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 164; Significance: 9e-88; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 37 - 200
Target Start/End: Original strand, 8885830 - 8885993
Alignment:
| Q |
37 |
aggtgagtgttccttgcacaagtttgttcaagactgtgacagtgagatgtggtcattgcaccaaccttctctcagttaacatgcgtgctttgctccttcc |
136 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8885830 |
aggtgagtgttccttgcacaagtttgttcaagactgtgacagtgagatgtggtcattgcaccaaccttctctcagttaacatgcgtgctttgctccttcc |
8885929 |
T |
|
| Q |
137 |
tgctcctaatcagcttcaccttggacacacttacttcaaccctcaaactcttatggtatgtgtg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8885930 |
tgctcctaatcagcttcaccttggacacacttacttcaaccctcaaactcttatggtatgtgtg |
8885993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 37 - 124
Target Start/End: Complemental strand, 42026314 - 42026227
Alignment:
| Q |
37 |
aggtgagtgttccttgcacaagtttgttcaagactgtgacagtgagatgtggtcattgcaccaaccttctctcagttaacatgcgtgc |
124 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| ||||| |||||||| ||||||||||| || || || |||| ||||||||||| |
|
|
| T |
42026314 |
aggtgagtgttccttgcacaagcttgttcaagaccgtgactgtgagatgcggtcattgcactaatctgcttccagtcaacatgcgtgc |
42026227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University