View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4017_low_47 (Length: 242)

Name: NF4017_low_47
Description: NF4017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4017_low_47
NF4017_low_47
[»] chr3 (21 HSPs)
chr3 (1-240)||(26205761-26206000)
chr3 (1-240)||(26111477-26111727)
chr3 (14-240)||(26233806-26234041)
chr3 (92-158)||(26128821-26128887)
chr3 (100-167)||(26114056-26114123)
chr3 (15-73)||(26178722-26178780)
chr3 (15-73)||(26128672-26128731)
chr3 (100-159)||(17745331-17745390)
chr3 (100-159)||(19046651-19046710)
chr3 (92-146)||(26178888-26178943)
chr3 (100-181)||(26128554-26128636)
chr3 (100-181)||(26178604-26178686)
chr3 (111-167)||(28151128-28151184)
chr3 (100-159)||(27919529-27919588)
chr3 (100-167)||(28003375-28003442)
chr3 (100-165)||(26202505-26202573)
chr3 (18-64)||(27459805-27459851)
chr3 (14-71)||(28134726-28134783)
chr3 (37-73)||(26114159-26114195)
chr3 (92-152)||(27459741-27459801)
chr3 (15-71)||(28184891-28184947)


Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 26206000 - 26205761
Alignment:
Q  1 ttattcaatggtctaagatcactaatgcatctgttcttattacaggagttattgaatgaacaattaatggatcgacggttcttattacagacacttgcgg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||    
T  26206000 ttattcaatggtctaagatcactaatgcatctgttcttattacaggagttattgaatgaacaattaatggatcgacagttcttattacagacacttgtgg 26205901  T
Q  101 aaactgatattaccatcaaaccttctcaggaagaaaatgtaatatagtaccatctcattatgcatatcaacttttgtgaattcaattataaaatgctgtg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26205900 aaactgatattaccatcaaaccttctcaggaagaaaatgtaatatagtaccatctcattatgcatatcaacttttgtgaattcaattataaaatgctgtg 26205801  T
Q  201 atttcgaaagatgatgaaaaactgcttccaatcacctatg 240  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  26205800 atttcgaaagatgatgaaaaactgcttccaatcacctatg 26205761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 26111727 - 26111477
Alignment:
Q  1 ttattcaatggtcta--agatcactaatgcatctgttcttattacaggagttattgaatgaacaattaatggatcgacggttcttatt---------aca 89  Q
    |||||||||||||||  |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| || |||  |         |||    
T  26111727 ttattcaatggtctataagatcactaatgcatctgttcttattacaggagttaatgactgaacaattaatggatcgacagtgcttgatgaaccaacaaca 26111628  T
Q  90 gacacttgcggaaactgatattaccatcaaaccttctcaggaagaaaatgtaatatagtaccatctcattatgcatatcaacttttgtgaattcaattat 189  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26111627 gacacttgcggaaactgatattaccatcaaaccttctcaggaagaaaatgtaatatagtaccatctcattatgcatatcaacttttgtgaattcaattat 26111528  T
Q  190 aaaatgctgtgatttcgaaagatgatgaaaaactgcttccaatcacctatg 240  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  26111527 aaagtgctgtgatttcgaaagatgatgaaaaactgcttccaatcacctatg 26111477  T

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Target: chr3; HSP #3
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 14 - 240
Target Start/End: Complemental strand, 26234041 - 26233806
Alignment:
Q  14 taagatcactaatgcatctgttcttattacaggagttattgaatgaacaattaatggatcgacggttcttatt---------acagacacttgcggaaac 104  Q
    |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| || |||  |         ||||||||||||||||||    
T  26234041 taagatcattaatgcatctgttcttattacaggagttattcaatgaacaattaatggatcgacagtgcttgatcaaccaacaacagacacttgcggaaac 26233942  T
Q  105 tgatattaccatcaaaccttctcaggaagaaaatgtaatatagtaccatctcattatgcatatcaacttttgtgaattcaattataaaatgctgtgattt 204  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  26233941 taatattaccatcaaaccttctcaggaagaaaatgtaatatagtaccatctcattatgcatatcaacttttgtgaattcaattataacatgctgtgattt 26233842  T
Q  205 cgaaagatgatgaaaaactgcttccaatcacctatg 240  Q
    ||||| ||||||||||||||||||||||||||||||    
T  26233841 cgaaatatgatgaaaaactgcttccaatcacctatg 26233806  T

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Target: chr3; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 92 - 158
Target Start/End: Complemental strand, 26128887 - 26128821
Alignment:
Q  92 cacttgcggaaactgatattaccatcaaaccttctcaggaagaaaatgtaatatagtaccatctcat 158  Q
    |||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||    
T  26128887 cacttgcggaaactgatactaccatcaaaccttctcaggaagataatgtaatatagtaccatctcat 26128821  T

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Target: chr3; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 100 - 167
Target Start/End: Complemental strand, 26114123 - 26114056
Alignment:
Q  100 gaaactgatattaccatcaaaccttctcaggaagaaaatgtaatatagtaccatctcattatgcatat 167  Q
    |||||||||| |||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||    
T  26114123 gaaactgatactaccatcaaaccttctcaagaagataatgtaatatagtaccatctcattgtgcatat 26114056  T

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Target: chr3; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 15 - 73
Target Start/End: Complemental strand, 26178780 - 26178722
Alignment:
Q  15 aagatcactaatgcatctgttcttattacaggagttattgaatgaacaattaatggatc 73  Q
    |||||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||    
T  26178780 aagatcactaatgcatctattcttgttacaggagttaatgaatgaacaattaatggatc 26178722  T

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Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 15 - 73
Target Start/End: Complemental strand, 26128731 - 26128672
Alignment:
Q  15 aagatcactaatgcatctgttcttattacaggagttattgaatgaa-caattaatggatc 73  Q
    |||||||||||||||||| ||||| |||||||||||| |||||||| |||||||||||||    
T  26128731 aagatcactaatgcatctattcttgttacaggagttaatgaatgaaccaattaatggatc 26128672  T

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Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 159
Target Start/End: Complemental strand, 17745390 - 17745331
Alignment:
Q  100 gaaactgatattaccatcaaaccttctcaggaagaaaatgtaatatagtaccatctcatt 159  Q
    |||||||||  |||| ||||||||||||||||| | ||||||||||||||||| ||||||    
T  17745390 gaaactgatgctaccgtcaaaccttctcaggaaaataatgtaatatagtaccacctcatt 17745331  T

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Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 159
Target Start/End: Complemental strand, 19046710 - 19046651
Alignment:
Q  100 gaaactgatattaccatcaaaccttctcaggaagaaaatgtaatatagtaccatctcatt 159  Q
    |||||||||  |||| ||||||||||||||||| | ||||||||||||||||| ||||||    
T  19046710 gaaactgatgctaccgtcaaaccttctcaggaaaataatgtaatatagtaccacctcatt 19046651  T

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Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 146
Target Start/End: Complemental strand, 26178943 - 26178888
Alignment:
Q  92 cacttgcggaaactgatattaccatcaaacc-ttctcaggaagaaaatgtaatata 146  Q
    |||||||||||||||||| |||||||||||| |||| ||||||| |||||||||||    
T  26178943 cacttgcggaaactgatactaccatcaaacctttcttaggaagataatgtaatata 26178888  T

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Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 100 - 181
Target Start/End: Complemental strand, 26128636 - 26128554
Alignment:
Q  100 gaaactgatattaccatcaaaccttctcaggaagaaaatgt-aatatagtaccatctcattatgcatatcaacttttgtgaat 181  Q
    |||||||||| ||||||||||| |||||||||| | ||||| |||||||||  |||||||| ||||||| || | ||||||||    
T  26128636 gaaactgatactaccatcaaacattctcaggaatataatgtaaatatagtattatctcattgtgcatatgaagtgttgtgaat 26128554  T

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Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 100 - 181
Target Start/End: Complemental strand, 26178686 - 26178604
Alignment:
Q  100 gaaactgatattaccatcaaaccttctcaggaagaaaatgt-aatatagtaccatctcattatgcatatcaacttttgtgaat 181  Q
    |||||||||| ||||||||||| |||||||||| | ||||| |||||||||  |||||||| ||||||| || | ||||||||    
T  26178686 gaaactgatactaccatcaaacattctcaggaatataatgtaaatatagtattatctcattgtgcatatgaagtgttgtgaat 26178604  T

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Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 167
Target Start/End: Original strand, 28151128 - 28151184
Alignment:
Q  111 taccatcaaaccttctcaggaagaaaatgtaatatagtaccatctcattatgcatat 167  Q
    |||| ||||||||||||| ||| | ||||||||||||||||| |||||| |||||||    
T  28151128 taccgtcaaaccttctcaagaaaataatgtaatatagtaccacctcattgtgcatat 28151184  T

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Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 100 - 159
Target Start/End: Original strand, 27919529 - 27919588
Alignment:
Q  100 gaaactgatattaccatcaaaccttctcaggaagaaaatgtaatatagtaccatctcatt 159  Q
    |||| ||||| |||| ||||||||||||| ||| | ||||||||||||||||| ||||||    
T  27919529 gaaattgatactaccgtcaaaccttctcaagaaaataatgtaatatagtaccacctcatt 27919588  T

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Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 100 - 167
Target Start/End: Original strand, 28003375 - 28003442
Alignment:
Q  100 gaaactgatattaccatcaaaccttctcaggaagaaaatgtaatatagtaccatctcattatgcatat 167  Q
    |||||||||  |||| ||||||||||||| ||| | ||||||||||||||||| |||||  |||||||    
T  28003375 gaaactgatgctaccgtcaaaccttctcaagaaaataatgtaatatagtaccacctcatcgtgcatat 28003442  T

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Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 165
Target Start/End: Complemental strand, 26202573 - 26202505
Alignment:
Q  100 gaaactgatattaccatcaaaccttctcaggaagaaaatg---taatatagtaccatctcattatgcat 165  Q
    |||||||||| |||||||||||||||||| ||| | ||||   ||||||||||| |||||||| |||||    
T  26202573 gaaactgatactaccatcaaaccttctcaagaatataatgtaataatatagtacaatctcattgtgcat 26202505  T

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Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 27459851 - 27459805
Alignment:
Q  18 atcactaatgcatctgttcttattacaggagttattgaatgaacaat 64  Q
    ||||||||| | | |||||||||||||||||||| ||||||||||||    
T  27459851 atcactaattcgtatgttcttattacaggagttaatgaatgaacaat 27459805  T

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Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 71
Target Start/End: Original strand, 28134726 - 28134783
Alignment:
Q  14 taagatcactaatgcatctgttcttattacaggagttattgaatgaacaattaatgga 71  Q
    |||||||| |||||| | ||||||| |||||||||||  |||||||||||| ||||||    
T  28134726 taagatcattaatgcttatgttcttgttacaggagttgatgaatgaacaatcaatgga 28134783  T

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Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 73
Target Start/End: Complemental strand, 26114195 - 26114159
Alignment:
Q  37 ttattacaggagttattgaatgaacaattaatggatc 73  Q
    |||||||||||||||  ||||||||||||||||||||    
T  26114195 ttattacaggagttaaggaatgaacaattaatggatc 26114159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 152
Target Start/End: Complemental strand, 27459801 - 27459741
Alignment:
Q  92 cacttgcggaaactgatattaccatcaaaccttctcaggaagaaaatgtaatatagtacca 152  Q
    ||||||| |||||||||  || | ||||||||||||||||| | ||||||||||| |||||    
T  27459801 cacttgcagaaactgatgctagcgtcaaaccttctcaggaaaataatgtaatataatacca 27459741  T

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Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 71
Target Start/End: Original strand, 28184891 - 28184947
Alignment:
Q  15 aagatcactaatgcatctgttcttattacaggagttattgaatgaacaattaatgga 71  Q
    ||||||| || ||| ||||||||| |||||||||||  |||||||||||| ||||||    
T  28184891 aagatcattattgcttctgttcttgttacaggagttgatgaatgaacaatcaatgga 28184947  T

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