View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4017_low_48 (Length: 238)
Name: NF4017_low_48
Description: NF4017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4017_low_48 |
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Alignment Details
Target: chr8 (Bit Score: 135; Significance: 2e-70; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 75 - 221
Target Start/End: Complemental strand, 1458158 - 1458012
Alignment:
| Q |
75 |
ttatttcaaaataaatttcaaaagcaaccatttcttcaaattccaagacaaaatattaataatggaatgaaagagagagcatgacatacagaaccagggg |
174 |
Q |
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| T |
1458158 |
ttatttcaaaataaatttcaaaagcaaccatttcttcaaattccaagacaaaatgttaataatggaatgaaagagagagcatgacatacagaaccagggg |
1458059 |
T |
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| Q |
175 |
tgagaccaccaagttctgcaatagtgtccttggccatgagaattctc |
221 |
Q |
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| T |
1458058 |
tgagaccaccaagtcctgcaatagtgtccttggccatgaaaattctc |
1458012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 75 - 221
Target Start/End: Complemental strand, 2427865 - 2427719
Alignment:
| Q |
75 |
ttatttcaaaataaatttcaaaagcaaccatttcttcaaattccaagacaaaatattaataatggaatgaaagagagagcatgacatacagaaccagggg |
174 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2427865 |
ttatttcaaaataaatttcaaaagcaaccatttcttcaaattccaagacaaaatgttaataatggaatgaaagagagagcatgacatacagaaccagggg |
2427766 |
T |
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| Q |
175 |
tgagaccaccaagttctgcaatagtgtccttggccatgagaattctc |
221 |
Q |
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| T |
2427765 |
tgagaccaccaagtcctgcaatagtgtccttggccatgaaaattctc |
2427719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 1458287 - 1458210
Alignment:
| Q |
1 |
taattgtaattcttatcttaatcttagttcattcattgacaagaactcaattttgtggtgatttctgcataaaattat |
78 |
Q |
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| T |
1458287 |
taattgtaattcttatcttaatcttagttcattcattgacaagaactcaattttgtggtggtttctgcataaaattat |
1458210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 2427994 - 2427917
Alignment:
| Q |
1 |
taattgtaattcttatcttaatcttagttcattcattgacaagaactcaattttgtggtgatttctgcataaaattat |
78 |
Q |
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| T |
2427994 |
taattgtaattcttatcttaatcttagttcattcattgacaagaactcaattttgtggtggtttctgcataaaattat |
2427917 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 141 - 221
Target Start/End: Complemental strand, 2431053 - 2430973
Alignment:
| Q |
141 |
atgaaagagagagcatgacatacagaaccaggggtgagaccaccaagttctgcaatagtgtccttggccatgagaattctc |
221 |
Q |
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| T |
2431053 |
atgaaagagagagcatgacatacaaaaccaggggtgagagcaccaagttctgcagtagtgtctttggtcatgcggattctc |
2430973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 147 - 207
Target Start/End: Complemental strand, 2434627 - 2434567
Alignment:
| Q |
147 |
gagagagcatgacatacagaaccaggggtgagaccaccaagttctgcaatagtgtccttgg |
207 |
Q |
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||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||| |
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| T |
2434627 |
gagagagcatgacatacagaaccaggggtgagagcaccaagtcctgcagtagtgtccttgg |
2434567 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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