View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4017_low_49 (Length: 238)
Name: NF4017_low_49
Description: NF4017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4017_low_49 |
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| [»] chr3 (8 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 26206492 - 26206272
Alignment:
| Q |
18 |
attataatgccgtcaatgatgttgtaaagttatttattttatctctagtgtacccatttttatgtctttaatacttaaaaattaagtaattggttaatga |
117 |
Q |
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| T |
26206492 |
attataatgccgtcaatgatgttgtaaagttatttattttatctctagtgtacccatttttatgtctttaatacttaaaatttaagtaattggttaatga |
26206393 |
T |
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| Q |
118 |
atatattgaagcatatgaactagaatggttcttaaaaaattatttctaatgacgtgaatctataatatttttctatagatggtaaactgtttggagataa |
217 |
Q |
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| T |
26206392 |
atatattgaagcatatgaactagaatggttcttaaaaaattatttctaatgacgtcaatctataatatttttctatagatggtaaactgtttggagataa |
26206293 |
T |
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| Q |
218 |
gaaatttctatatcgacaatt |
238 |
Q |
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||||||||||||||||||||| |
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| T |
26206292 |
gaaatttctatatcgacaatt |
26206272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 21 - 238
Target Start/End: Complemental strand, 26234512 - 26234289
Alignment:
| Q |
21 |
ataatgccgtcaatgatgttgtaaagttatttattttatctctagtgtacccatttttatgtctttaatacttaaaaattaagtaattggttaatgaata |
120 |
Q |
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| T |
26234512 |
ataatgccgtcaatgatgttgtaaaattatttattttatctctagtgtacccatttttatgtctttaatatttaaaaattaagtaattggttaatgaata |
26234413 |
T |
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| Q |
121 |
ta------ttgaagcatatgaactagaatggttcttaaaaaattatttctaatgacgtgaatctataatatttttctatagatggtaaactgtttggaga |
214 |
Q |
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| T |
26234412 |
taaaacaattgaagcatataaactagaatggttcttaaaaaattatttctaatgacgtgaatctataatatttttctatagatggtaaactgtttggaga |
26234313 |
T |
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| Q |
215 |
taagaaatttctatatcgacaatt |
238 |
Q |
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| T |
26234312 |
taagaaatttctatatcgacaatt |
26234289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 36 - 167
Target Start/End: Complemental strand, 26112209 - 26112073
Alignment:
| Q |
36 |
atgttgtaaagttatttattttatctctagtgtacccatttttatgtctttaatacttaaaaattaagtaattggttaatgaatat-----attgaagca |
130 |
Q |
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| T |
26112209 |
atgttgtaaagttattaattttatctctagtgtacacatttttatgtctttaatatttaaaaattaagtagttggttaatgaatataaacaattgaagca |
26112110 |
T |
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| Q |
131 |
tatgaactagaatggttcttaaaaaattatttctaat |
167 |
Q |
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| T |
26112109 |
tataaactagaatggttcttaaaaaattatttctaat |
26112073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 157 - 194
Target Start/End: Complemental strand, 26112042 - 26112005
Alignment:
| Q |
157 |
ttatttctaatgacgtgaatctataatatttttctata |
194 |
Q |
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| T |
26112042 |
ttatttctaatgacgtcaatctataatatttttctata |
26112005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 112
Target Start/End: Complemental strand, 26236863 - 26236766
Alignment:
| Q |
18 |
attataatgccgtcaatgatgttgtaaagttatttattttatctctagtgtacccatttttatgtc---tttaatacttaaaaattaagtaattggtt |
112 |
Q |
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| T |
26236863 |
attatgatgctgtcaatgatgtcgtaaggttatttgttttatctttaatatacacatttctatgtcttttttaatatttaaaaattaactagttggtt |
26236766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 87
Target Start/End: Complemental strand, 26114538 - 26114484
Alignment:
| Q |
33 |
atgatgttgtaaagttatttattttatctctagtgtacccatttttatgtcttta |
87 |
Q |
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| T |
26114538 |
atgatgttgtaaagatatttattttatctttaatgtacacatttatctgtcttta |
26114484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 165
Target Start/End: Complemental strand, 26203042 - 26202965
Alignment:
| Q |
93 |
taaaaattaagtaattggttaatgaatata-----ttgaagcatatgaactagaatggttcttaaaaaattatttcta |
165 |
Q |
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| T |
26203042 |
taaatattaagtagttggttaaagaatataaactattgaagcatttcaactataatggttcttaaaaaagtatttcta |
26202965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 122
Target Start/End: Complemental strand, 26180290 - 26180188
Alignment:
| Q |
24 |
atgccgtcaatgatgttgtaaagttatttattttatctctagtgtacccatttttatgtc---tttaatacttaaaaattaagtaattgg-ttaatgaat |
119 |
Q |
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|||| ||||||||||| ||| |||||||| |||||||| || | ||| ||||| |||||| ||||||| ||||||||||| || |||| |||| |||| |
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| T |
26180290 |
atgctgtcaatgatgtcgtatagttatttgttttatctataatatacacatttctatgtcttttttaatatttaaaaattaactagttggattaaagaat |
26180191 |
T |
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| Q |
120 |
ata |
122 |
Q |
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||| |
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| T |
26180190 |
ata |
26180188 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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