View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4017_low_5 (Length: 685)
Name: NF4017_low_5
Description: NF4017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4017_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 302; Significance: 1e-169; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 359 - 680
Target Start/End: Original strand, 41074813 - 41075134
Alignment:
| Q |
359 |
tttatgtcattgaaagttttctgctctggaatactgctgtgttttgtgccatgttgctgattttgtaaacgggcagttcctagttgatataccttcgagg |
458 |
Q |
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| T |
41074813 |
tttatgtcattgaaagttttctgctctggaatactgctgtgttttgtgccatgttgctgattttgtaaacaggcagttcctagttgatataccttcgagg |
41074912 |
T |
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| Q |
459 |
atcaggactctggaagttaatatggtgatggtattctctgaggtgcttgcagtagggtacatattctgatttgccagtagtgttgacacagtttagtagt |
558 |
Q |
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| T |
41074913 |
atcaggactctggaagttaatatggtgatagtattctctgaggtgcttgcagtagggtacatattctgatttgccagtagtgttgacacagtttagtagt |
41075012 |
T |
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| Q |
559 |
agtttgaatgcaaatacttggagtgattggtgtgctggtgaagagtgctcattgtagtatgaattatattcaacgagagcttgtatgcttggattatttg |
658 |
Q |
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| T |
41075013 |
agtttgaatgcaaatacttggagtgattggtgtgctggtgaagagtgctcattgtagtatgaattatatttaacgagagcttgtatgcttggattatttg |
41075112 |
T |
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| Q |
659 |
gtggtttttaagcatgtctgtg |
680 |
Q |
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||| |||||||| ||||||||| |
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| T |
41075113 |
gtgatttttaagtatgtctgtg |
41075134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 121 - 675
Target Start/End: Original strand, 41086057 - 41086622
Alignment:
| Q |
121 |
acttatgatatctcattaagacggttttagtttg--agtctttcctagtggtgtgggattgc-aaattgtcaatagcttcacctgttcttctggttgatc |
217 |
Q |
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| T |
41086057 |
acttatgatatctcataaagacatttctagtttgcgagtcttttctagtggcatgggattgctaaagtgtggatagcttcacctgttcttctggttgatc |
41086156 |
T |
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| Q |
218 |
agaatttatctgtatgaaaggtgagaaactgttttgtacctctggtgtgtcaga--tcatttatgac------atggttttggctggaaatagcagaatg |
309 |
Q |
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| T |
41086157 |
agaatttatctgtgtgaaaggtgtgacactgttttgta--tctggtgtgttataaatcatttatagctctttgatggttttggctggaaataa-agaatg |
41086253 |
T |
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| Q |
310 |
tttgttgtcactaaactgaaacaa---tgatgattgtggatctaatggtgagtttatgtcattgaaagttttctgctctggaatactgctgtgttttgtg |
406 |
Q |
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| T |
41086254 |
attgttgtcgctaaactgaaacaaatttgatgattgcggatctaatgctgagtttatgtcatggaatgtgttctgctctggagcactgttgtgtcctgtg |
41086353 |
T |
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| Q |
407 |
ccatgttgctgattttgtaaacgggcagttcctagttgatataccttcgaggatcaggactctggaagttaatatggtgatggtattctctgaggtgctt |
506 |
Q |
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| T |
41086354 |
ccatgttgctgattttgtaaattggatgttcccagttgatataccttggaggattgggactctggtagttaatatggtgatagtattctctgaggtgctt |
41086453 |
T |
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| Q |
507 |
gcagtagggtacatattctgatttgccagtagtgttgacacagtttagtagtagtttgaatgcaaatacttggagtgattggtgtgctggtgaagagtgc |
606 |
Q |
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| T |
41086454 |
gcagtagagtacatgttctgatttgccagtattgttaacacagttcagtagcagtttgaatgcaaatacttgaagtgattggtgtgctggtgaagagtgc |
41086553 |
T |
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| Q |
607 |
tcattgtagtatgaattatattcaacgagagcttgtatgcttggattatttggtggtttttaagcatgt |
675 |
Q |
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| T |
41086554 |
tcattgtattatgtattatatttaaccagagtttgtatgcttggattatttggtagtttttaagtatgt |
41086622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 19 - 280
Target Start/End: Original strand, 41074557 - 41074818
Alignment:
| Q |
19 |
tgacaagcatgaaatgttgtgtttccatattttgaaaaagcttatttagagtttatgtagacttatcttatcacatatgtatccaaattaactatagaat |
118 |
Q |
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| T |
41074557 |
tgacaagcatgaaatgttgtgtttccatattttgaaaaagcttatttagagtttatgtagacttatcttatcacatatgtatccaaattaactacagaat |
41074656 |
T |
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| Q |
119 |
acacttatgatatctcattaagacggttttagtttgagtctttcctagtggtgtgggattgcaaattgtcaatagcttcacctgttcttctggttgatca |
218 |
Q |
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| T |
41074657 |
acacttatgatatctcattaagacggttttagtttgagtctttcctagtggtgtgggattgcaaattgtcaatagcttcacctgttcttctggttgatca |
41074756 |
T |
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| Q |
219 |
gaatttatctgtatgaaaggtgagaaactgttttgtacctctggtgtgtcagatcatttatg |
280 |
Q |
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| T |
41074757 |
gaatttatctgtatgaaaggtgagaaactgttttgtacctctggtgtgtcagatcatttatg |
41074818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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