View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4017_low_50 (Length: 237)
Name: NF4017_low_50
Description: NF4017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4017_low_50 |
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Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 550015 - 550235
Alignment:
| Q |
1 |
atttctgactagtagagagaatggaaattacgattttcggtttgcaacatttatcatataccaaggtccacttgttataaataggaggtagatgagaaac |
100 |
Q |
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| T |
550015 |
atttctgactagtagagagaatggaaattacgattttcggtttgcaacatttatcatataccaaggtccacttgttataaataggaggtagatgagaaac |
550114 |
T |
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| Q |
101 |
ccaaactcagaaattacatacaattattagtcatatttttgtccctaaacatgctaagaagagttgaaggaatatcgttgtgtcattttcaatttaaaat |
200 |
Q |
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| T |
550115 |
ccaaactcagaaattacatacaattattagtcatatttttgtccctaaacatgctaagaagagttgaaggaatatcgttgtgtcattttcaatttaaaat |
550214 |
T |
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| Q |
201 |
tctcgttcaatctcatattaa |
221 |
Q |
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| T |
550215 |
tctcgttcaatctcatattaa |
550235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 23422634 - 23422523
Alignment:
| Q |
1 |
atttctgactagtagagagaatggaaattacgattttcggtttgcaacatttatcatataccaaggtccacttgttataaatag---gaggtagatgaga |
97 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
23422634 |
atttctgactagtagagagaatggaaattacgattttcggtttgcaacaattatcatataccaaggtccacttgttataaataggaggaggtagatgagc |
23422535 |
T |
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| Q |
98 |
aacccaaactca |
109 |
Q |
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|| ||||||||| |
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| T |
23422534 |
aaaccaaactca |
23422523 |
T |
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