View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4017_low_51 (Length: 235)
Name: NF4017_low_51
Description: NF4017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4017_low_51 |
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Alignment Details
Target: chr1 (Bit Score: 171; Significance: 6e-92; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 44 - 218
Target Start/End: Complemental strand, 11341960 - 11341786
Alignment:
| Q |
44 |
attctttccttttcactattacgagggtcatactgtttgtgttgttattgttcacaggaaaaatgtgaagcaaatgccccaacctccctaatccctacaa |
143 |
Q |
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| T |
11341960 |
attctttccttttcactattacgagggtcatactgtttgtgttgttattgttcacaggaaaaatgtgaagcaaatgccccaacctccctaatccctacaa |
11341861 |
T |
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| Q |
144 |
aaagagaagaagaacaaacaaattctttttgtgaactgcatttgatgatgttagtgcaaaaagattatctgtttc |
218 |
Q |
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| T |
11341860 |
aaagagaagaagaacaaacaaatcctttttgtgaactgcatttgatgatgttagtgcaaaaagattatctgtttc |
11341786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 44 - 218
Target Start/End: Complemental strand, 11499979 - 11499805
Alignment:
| Q |
44 |
attctttccttttcactattacgagggtcatactgtttgtgttgttattgttcacaggaaaaatgtgaagcaaatgccccaacctccctaatccctacaa |
143 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11499979 |
attctttccttttcactattacgagggtcatactgtttgtgttgttattgttcacaggaaaaatgtgaagcaaatgccccaacctccctaatccctacaa |
11499880 |
T |
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| Q |
144 |
aaagagaagaagaacaaacaaattctttttgtgaactgcatttgatgatgttagtgcaaaaagattatctgtttc |
218 |
Q |
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| T |
11499879 |
aaagagaagaagaacaaacaaatcctttttgtgaactgcatttgatgatgttagtgcaaaaagattatctgtttc |
11499805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 95
Target Start/End: Original strand, 32196358 - 32196440
Alignment:
| Q |
14 |
cataggaaaggagatatgtacacnnnnnnnattctttccttttcactattacg-agggtcatactgtttgtgttgttattgtt |
95 |
Q |
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| T |
32196358 |
cataggaaaggagatatggacactttttttattctttccttttcactattccgaagggtcacattgtctgtgttgttattgtt |
32196440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 217
Target Start/End: Original strand, 32196509 - 32196557
Alignment:
| Q |
169 |
tttttgtgaactgcatttgatgatgttagtgcaaaaagattatctgttt |
217 |
Q |
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|||||||||||||||||| |||||| | | ||||||||||||||||||| |
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| T |
32196509 |
tttttgtgaactgcatttcatgatgatggggcaaaaagattatctgttt |
32196557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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