View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4017_low_52 (Length: 223)
Name: NF4017_low_52
Description: NF4017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4017_low_52 |
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Alignment Details
Target: chr5 (Bit Score: 169; Significance: 8e-91; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 15 - 203
Target Start/End: Original strand, 20535763 - 20535951
Alignment:
| Q |
15 |
cacagactatctaagattacaatttaatggacaatgtattcattcaaaaaataaacaaatactccctcttttcgtagctaggagtcatttccaagaggta |
114 |
Q |
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| T |
20535763 |
cacagactatctaagattacaatttaatggacaatgtattcattcagaaaataaacaaatactccctcttttcgtagctaggagtcatttccaagaggta |
20535862 |
T |
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| Q |
115 |
gagttttattaacactaattatccacatttgggtcctttgaggagaaaatcatacaatttttagtctctcaaatttctaataacaattc |
203 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||| |
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| T |
20535863 |
gagttgtattaacactaattatccacatttgggtcctttgaggagaaaatcacacaatttctagtctctcaaatttctaataccaattc |
20535951 |
T |
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