View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4017_low_55 (Length: 208)
Name: NF4017_low_55
Description: NF4017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4017_low_55 |
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Alignment Details
Target: chr1 (Bit Score: 172; Significance: 1e-92; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 18 - 189
Target Start/End: Complemental strand, 26790938 - 26790767
Alignment:
| Q |
18 |
tcaaaggatggaaattcctatatctctccaatttacaggttccattttcttaatccaatttctaaactctttacttgttgttatgttaccaaaatatgat |
117 |
Q |
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| T |
26790938 |
tcaaaggatggaaattcctatatctctccaatttacaggttccattttcttaatccaatttctaaactctttacttgttgttatgttaccaaaatatgat |
26790839 |
T |
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| Q |
118 |
gttacattggttttattttaatatatggtgttcttggtataggttaaaaacgaattaccaagtactttaaag |
189 |
Q |
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| T |
26790838 |
gttacattggttttattttaatatatggtgttcttggtataggttaaaaacgaattaccaagtactttaaag |
26790767 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 76
Target Start/End: Complemental strand, 26784609 - 26784554
Alignment:
| Q |
21 |
aaggatggaaattcctatatctctccaatttacaggttccattttcttaatccaat |
76 |
Q |
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| T |
26784609 |
aaggatggaaattcttatacctctccaatatacaggttccatttacttaattcaat |
26784554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 13 - 71
Target Start/End: Complemental strand, 26831321 - 26831263
Alignment:
| Q |
13 |
cagtatcaaaggatggaaattcctatatctctccaatttacaggttccattttcttaat |
71 |
Q |
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| T |
26831321 |
cagtctcaaaggatggaaattcttatacctctccgatttgcaggttcgattttcttaat |
26831263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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