View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4017_low_6 (Length: 676)

Name: NF4017_low_6
Description: NF4017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4017_low_6
NF4017_low_6
[»] chr5 (14 HSPs)
chr5 (159-481)||(4101682-4102022)
chr5 (264-622)||(6431970-6432349)
chr5 (262-622)||(5343299-5343681)
chr5 (262-622)||(32747036-32747419)
chr5 (262-622)||(1709956-1710335)
chr5 (11-167)||(4101021-4101177)
chr5 (262-580)||(24855515-24855854)
chr5 (109-254)||(4138504-4138641)
chr5 (27-99)||(4109382-4109454)
chr5 (596-658)||(4102023-4102085)
chr5 (467-555)||(41615775-41615864)
chr5 (458-552)||(27949123-27949218)
chr5 (269-339)||(41615886-41615956)
chr5 (27-97)||(4132567-4132637)
[»] chr1 (24 HSPs)
chr1 (264-622)||(6605174-6605549)
chr1 (262-622)||(12524467-12524847)
chr1 (262-608)||(39598406-39598772)
chr1 (262-622)||(3474824-3475204)
chr1 (416-622)||(5749468-5749675)
chr1 (416-622)||(10222776-10222983)
chr1 (288-581)||(21191137-21191452)
chr1 (416-622)||(14270826-14271033)
chr1 (416-580)||(10312775-10312940)
chr1 (416-579)||(4851706-4851869)
chr1 (262-410)||(10312966-10313115)
chr1 (262-410)||(22334688-22334837)
chr1 (263-410)||(7199269-7199417)
chr1 (262-406)||(14270650-14270794)
chr1 (416-608)||(7199053-7199242)
chr1 (263-410)||(18277118-18277265)
chr1 (264-365)||(22817314-22817415)
chr1 (458-555)||(7564180-7564279)
chr1 (458-552)||(29251226-29251321)
chr1 (269-410)||(7564369-7564511)
chr1 (303-410)||(10223007-10223116)
chr1 (262-406)||(29250880-29251019)
chr1 (501-555)||(30517870-30517924)
chr1 (416-472)||(22334604-22334660)
[»] chr3 (25 HSPs)
chr3 (262-622)||(41974127-41974508)
chr3 (262-622)||(49326874-49327254)
chr3 (274-621)||(9127237-9127605)
chr3 (274-621)||(9135344-9135712)
chr3 (262-619)||(47374328-47374706)
chr3 (262-615)||(48062376-48062754)
chr3 (262-608)||(8486080-8486448)
chr3 (262-622)||(16483052-16483432)
chr3 (418-659)||(53394296-53394541)
chr3 (498-658)||(21979406-21979566)
chr3 (498-658)||(22001837-22001997)
chr3 (498-656)||(18876559-18876717)
chr3 (416-622)||(30389285-30389493)
chr3 (262-370)||(18876205-18876313)
chr3 (262-406)||(30389110-30389255)
chr3 (264-402)||(49440067-49440206)
chr3 (262-370)||(21449997-21450106)
chr3 (264-406)||(44207382-44207526)
chr3 (416-554)||(44207211-44207350)
chr3 (274-403)||(9119459-9119588)
chr3 (262-346)||(45405500-45405584)
chr3 (307-370)||(21979788-21979850)
chr3 (307-370)||(22002219-22002281)
chr3 (275-343)||(3733453-3733521)
chr3 (416-458)||(18876378-18876420)
[»] chr7 (15 HSPs)
chr7 (262-622)||(7254950-7255331)
chr7 (262-622)||(35584621-35585002)
chr7 (262-622)||(38264603-38264983)
chr7 (262-622)||(38257028-38257408)
chr7 (266-659)||(24687040-24687455)
chr7 (264-622)||(26792191-26792570)
chr7 (262-622)||(29331842-29332223)
chr7 (416-622)||(15032131-15032338)
chr7 (268-580)||(43748792-43749127)
chr7 (416-622)||(33849145-33849352)
chr7 (262-622)||(45490413-45490795)
chr7 (262-580)||(108896-109234)
chr7 (416-622)||(37999037-37999245)
chr7 (264-370)||(29739031-29739138)
chr7 (264-406)||(37998865-37999007)
[»] chr2 (18 HSPs)
chr2 (262-622)||(5463941-5464322)
chr2 (272-615)||(15112910-15113274)
chr2 (261-406)||(41961908-41962053)
chr2 (458-659)||(24168860-24169050)
chr2 (262-339)||(43334010-43334087)
chr2 (458-555)||(5937999-5938097)
chr2 (532-614)||(41962151-41962233)
chr2 (458-552)||(18963886-18963981)
chr2 (269-410)||(16739197-16739342)
chr2 (262-403)||(18963537-18963678)
chr2 (269-339)||(34906536-34906606)
chr2 (458-555)||(34948889-34948988)
chr2 (462-555)||(16739010-16739104)
chr2 (272-408)||(5938198-5938335)
chr2 (275-410)||(34948664-34948800)
chr2 (416-458)||(18963709-18963751)
chr2 (262-343)||(45526507-45526588)
chr2 (593-658)||(45526691-45526756)
[»] chr8 (4 HSPs)
chr8 (262-622)||(24830950-24831331)
chr8 (262-622)||(11285-11666)
chr8 (263-559)||(41834896-41835212)
chr8 (266-406)||(42190746-42190885)
[»] chr4 (20 HSPs)
chr4 (262-620)||(52919013-52919394)
chr4 (262-647)||(47985217-47985623)
chr4 (262-622)||(55611944-55612324)
chr4 (262-622)||(44108280-44108659)
chr4 (416-622)||(38990222-38990429)
chr4 (416-622)||(47604138-47604344)
chr4 (267-615)||(45659091-45659458)
chr4 (444-622)||(53269777-53269956)
chr4 (265-533)||(13721548-13721838)
chr4 (416-622)||(40692537-40692744)
chr4 (416-622)||(40761915-40762122)
chr4 (263-559)||(11647907-11648223)
chr4 (416-622)||(53511896-53512103)
chr4 (262-402)||(53511720-53511861)
chr4 (262-339)||(51889303-51889380)
chr4 (262-410)||(53269584-53269731)
chr4 (262-339)||(38990548-38990625)
chr4 (262-320)||(17647385-17647443)
chr4 (262-410)||(40692769-40692920)
chr4 (378-410)||(38990453-38990485)
[»] chr6 (6 HSPs)
chr6 (262-622)||(13037082-13037464)
chr6 (262-601)||(480512-480871)
chr6 (262-410)||(34949725-34949874)
chr6 (522-658)||(3514050-3514185)
chr6 (458-552)||(12304746-12304841)
chr6 (275-413)||(12304873-12305012)
[»] scaffold0168 (2 HSPs)
scaffold0168 (270-568)||(12368-12686)
scaffold0168 (561-622)||(16100-16161)
[»] scaffold0064 (1 HSPs)
scaffold0064 (592-658)||(62458-62524)


Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 159 - 481
Target Start/End: Original strand, 4101682 - 4102022
Alignment:
Q  159 ctcccctttgctggacaggatatccagtatccactaataactttagaatttcagtctatttcacgtagactttattggagaatgaatagaatagacttta 258  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  4101682 ctcccctttgctggacaggatatccagtatccactaataactttagaatttcagtctatttcacgaagactttattggagaatgaatagaatagacttta 4101781  T
Q  259 tgatgagggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagaccctttatttggttcgtttttgttg 358  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||    
T  4101782 tgctgagggtttccggattttataatccggaatgcatgaagctattccggattataaagtccaaactgcatcagaccctttatttggatcgtttttgttg 4101881  T
Q  359 cgaatgccttggnnnnnnntagaacaaaggtacataacataaatagaagcaaaat------------------ctaaaaccataataacagaaatgatga 440  Q
     |||||||||||       | |||||||| |||||||||||||||||| ||| ||                    |||||||||||||||||||||||||    
T  4101882 tgaatgccttggaaaaaaatggaacaaagatacataacataaatagaaacaacataaaacaaataaacagttaaaaaaaccataataacagaaatgatga 4101981  T
Q  441 attttttgggaagttgttttcaagaggatttctttgagtag 481  Q
    || ||||||||||||||||||||||||||||||| ||||||    
T  4101982 atcttttgggaagttgttttcaagaggatttcttcgagtag 4102022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 264 - 622
Target Start/End: Complemental strand, 6432349 - 6431970
Alignment:
Q  264 agggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagacccttta-tttggttcgtttttgttgcgaa 362  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||| ||| |||||||||||||||||||||||  ||||| ||||||| ||||| |     
T  6432349 agggtttccggattttataatccataatgcatgaagctattccggattgtaaggtccgaactgcatcagacccttttgtttggatcgttttcgttgcaat 6432250  T
Q  363 tgccttggnnnnnnntagaacaaaggtacataacataaatagaagcaaaatct-------------------aaaaccataataacagaaatgatgaatt 443  Q
    ||||||||       ||||||||||||||||||||||||| ||||||| ||                     |||||||||||||||||||||||||||     
T  6432249 tgccttggaaaaaaatagaacaaaggtacataacataaattgaagcaacataagacaaataaacagttaaaaaaaaccataataacagaaatgatgaatc 6432150  T
Q  444 ttttgggaagttgttttcaagaggatttctttgagt-agatcctgctgccttgcgaaatgacatattcatctggcagacagcaaaatctaactcatagca 542  Q
    |||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||||||||    
T  6432149 ttttgggaagatgttttcaagaggatttctttgagttagatcctgctgccttgccaaatgacatattcatctggcaggcagcacaatctaactcatagca 6432050  T
Q  543 acttcttgatatttttgagttatctatctatcaaggaggcatcaatgaatatctatatatttttgaaagcatgttgagga 622  Q
    || |||||||||||||||||||||||| ||||||||||||||||| || ||| ||||||||||||| |||||||||||||    
T  6432049 acctcttgatatttttgagttatctatgtatcaaggaggcatcaaggagtatatatatatttttgacagcatgttgagga 6431970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 180; E-Value: 7e-97
Query Start/End: Original strand, 262 - 622
Target Start/End: Complemental strand, 5343681 - 5343299
Alignment:
Q  262 tgagggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagacccttta-tttggttcgtttttgttgcg 360  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  ||||  ||||||| |||||     
T  5343681 tgagggttttcggattttataatccggaatgcatgaagctattccggattttaaagtccgaactgcatcagacccttttgtttgaatcgttttcgttgca 5343582  T
Q  361 aatgccttggnnnnnnn-tagaacaaaggtacataacataaatagaagcaaaatct-------------------aaaaccataataacagaaatgatga 440  Q
    ||||||||||        ||||||||||||||||||||||||| ||||||| ||                     ||||||||||||||| |||||||||    
T  5343581 aatgccttggaaaaaaaatagaacaaaggtacataacataaattgaagcaacataagacaaataaacagttaaaaaaaaccataataacataaatgatga 5343482  T
Q  441 attttttgggaagttgttttcaagaggatttctttgagt-agatcctgctgccttgcgaaatgacatattcatctggcagacagcaaaatctaactcata 539  Q
    || |||||||||| ||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||| |||||| ||||||||||||    
T  5343481 atcttttgggaaggtgttttcaagaggatttctttgagttagatcttgctgccttgccaaatgacatattcatctggcaggcagcaagatctaactcata 5343382  T
Q  540 gcaacttcttgatatttttgagttatctatctatcaaggaggcatcaatgaatatctatatatttttgaaagcatgttgagga 622  Q
    ||||| |||||||||||||| ||||||||| ||||||||||||||||| || ||||||||||||||||| |||||||||||||    
T  5343381 gcaacctcttgatatttttgtgttatctatgtatcaaggaggcatcaaggagtatctatatatttttgacagcatgttgagga 5343299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 262 - 622
Target Start/End: Original strand, 32747036 - 32747419
Alignment:
Q  262 tgagggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagacccttta-tttggttcgtttttgttgcg 360  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |||||| |||||||||||||| ||||| ||||||| |||||     
T  32747036 tgagggtttacggattttataatccggaatgcatgaagctattccggattttaaagttcgaacttcatcagaccctttagtttggatcgttttcgttgca 32747135  T
Q  361 aatgccttggnnnnnnn--tagaacaaaggtacataacataaatagaagcaaaatct-------------------aaaaccataataacagaaatgatg 439  Q
    ||||||||||         ||||||||||||||||||||||||| ||||||| ||                     ||||||||||||||||||||||||    
T  32747136 aatgccttggaaaaaaaaatagaacaaaggtacataacataaattgaagcaacataagacaaataaacagttaaaaaaaaccataataacagaaatgatg 32747235  T
Q  440 aattttttgggaagttgttttcaagaggatttctttgagt-agatcctgctgccttgcgaaatgacatattcatctggcagacagcaaaatctaactcat 538  Q
    ||| |||||||||  ||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||| || ||| |||||||||||    
T  32747236 aatcttttgggaaagtgttttcaagaggatttctttgagttagatcatgctgccttgccaaatgacatattcatctggcaggcaacaagatctaactcat 32747335  T
Q  539 agcaacttcttgatatttttgagttatctatctatcaaggaggcatcaatgaatatctatatatttttgaaagcatgttgagga 622  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||| ||||||    
T  32747336 agcaacctcttgatatttttgagttatctatctatcaaggaggcatcaaggagtatctatatatttttgacagcatgctgagga 32747419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 148; E-Value: 9e-78
Query Start/End: Original strand, 262 - 622
Target Start/End: Complemental strand, 1710335 - 1709956
Alignment:
Q  262 tgagggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagacccttta-tttggttcgtttttgttgcg 360  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||  ||||| || |||| |||||     
T  1710335 tgagcgtttccggattttataatccggaatgcatgaagctattccggattgtaaagtccgaactgcatcaaacccttttgtttggatcattttcgttgca 1710236  T
Q  361 aatgccttggnnnnnnntagaacaaaggtacataacataaatagaagca---------aaatc------taaaa----ccataataacagaaatgatgaa 441  Q
    | ||||||||       ||||||||||||||||||||||||| ||||||         ||||       |||||    ||||||||||||||||||| ||    
T  1710235 attgccttggaaaaa--tagaacaaaggtacataacataaattgaagcagcataagacaaataaacagttaaaaaaacccataataacagaaatgataaa 1710138  T
Q  442 ttttttgggaagttgttttcaagaggatttctttgagt-agatcctgctgccttgcgaaatgacatattcatctggcagacagcaaaatctaactcatag 540  Q
    | |||| ||||| ||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||| |||||  |||||||||| ||    
T  1710137 tcttttaggaaggtgttttcaagaggatttctttgagttagatcctgctgtcttgccaaatgacatattcatctggcaggcagcacgatctaactcaaag 1710038  T
Q  541 caacttcttgatatttttgagttatctatctatcaaggaggcatcaatgaatatctatatatttttgaaagcatgttgagga 622  Q
    |||| |||| |||||||||||||||||||||| ||||||| |||||| || ||||||||||||||||| | ||||| |||||    
T  1710037 caacctcttaatatttttgagttatctatctaccaaggagacatcaaggagtatctatatatttttgacatcatgtggagga 1709956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 11 - 167
Target Start/End: Original strand, 4101021 - 4101177
Alignment:
Q  11 cagagacctact-gtggttatcaatagagctattgtgttgaacacaaactttcggttgcacattctcggaccggccttcatctttatttacctccactgt 109  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  4101021 cagagacctacttgtggttatcaatagagctattgtgttgaacacaaactttcggttacacattctcggaccggccttcatctttatttacct-cactgt 4101119  T
Q  110 ttccctcattatgcaaattcttctcactacgagatgctctcgacatattctccccttt 167  Q
    |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  4101120 ttcccttattatgcaaattcttctcactacgagatgctcttgacatattctccccttt 4101177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 262 - 580
Target Start/End: Complemental strand, 24855854 - 24855515
Alignment:
Q  262 tgagggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagacccttta-tttggttcgtttttgttgcg 360  Q
    |||||||||||| ||||||||||| ||||||||||||||||||||||| | |||||||||||||| ||||||||||||  ||||| ||||||| |||||     
T  24855854 tgagggtttccgaattttataatcgggaatgcatgaagctattccggaatttaaagtccgaactgtatcagacccttttgtttggatcgttttcgttgca 24855755  T
Q  361 aatgccttggnnnnnnntagaacaaaggtacataacataaatagaagcaaaatct-------------------aaaaccataataacagaaatgatgaa 441  Q
      ||||| ||       |||||||||| |||||||||||||| ||||||| ||                     ||||||||||||||| ||||||||||    
T  24855754 tttgcctcggaaaaaaatagaacaaagatacataacataaattgaagcaacataagacaaataaatagttaaaaaaaaccataataacataaatgatgaa 24855655  T
Q  442 ttttttgggaagttgttttcaagaggatttctttgagt-agatcctgctgccttgcgaaatgacatattcatctggcagacagcaaaatctaactcatag 540  Q
    | |||||||||  ||||||||||| ||||||| ||||| ||||||||||||||||| ||||||||||||||||||| || |||||| |||||||||||||    
T  24855654 tcttttgggaaaatgttttcaagaagatttctgtgagttagatcctgctgccttgccaaatgacatattcatctggtaggcagcaagatctaactcatag 24855555  T
Q  541 caacttcttgatatttttgagttatctatctatcaaggag 580  Q
    |||| |||||||||||||||||||||||| ||||||||||    
T  24855554 caacctcttgatatttttgagttatctatgtatcaaggag 24855515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 109 - 254
Target Start/End: Original strand, 4138504 - 4138641
Alignment:
Q  109 tttccctcattatgcaaattcttctcactacgagatgctctcgacatattctcccctttgctggacaggatatccagtatccactaataactttagaatt 208  Q
    ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||       |||| || |||||||||||||||    
T  4138504 tttccctcattctgcaaattcttctcactacgagatgctcttgacatattctcccctttgctggacagga-------tatctacaaataactttagaatt 4138596  T
Q  209 tcagtctatttcacgtagactttattggagaatgaatagaatagac 254  Q
    ||||||||||||||  |||||||| ||| |||||||| | ||||||    
T  4138597 tcagtctatttcacaaagacttta-tggggaatgaattgtatagac 4138641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 27 - 99
Target Start/End: Original strand, 4109382 - 4109454
Alignment:
Q  27 ttatcaatagagctattgtgttgaacacaaactttcggttgcacattctcggaccggccttcatctttattta 99  Q
    ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4109382 ttatcaaaagtgctattgtgttgaacacaaactttcggttgcacattctcggaccggccttcatctttattta 4109454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 596 - 658
Target Start/End: Original strand, 4102023 - 4102085
Alignment:
Q  596 tatatatttttgaaagcatgttgaggaggttaaccatgttggcacatagagagcaatctattt 658  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4102023 tatatatttttgaaagcatgttgaggaggttaaccatgttggcacatagagagcaatctattt 4102085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 467 - 555
Target Start/End: Complemental strand, 41615864 - 41615775
Alignment:
Q  467 gatttctttgag-tagatcctgctgccttgcgaaatgacatattcatctggcagacagcaaaatctaactcatagcaacttcttgatatt 555  Q
    ||||||| |||| |||||| ||||||||||| ||||||||||||||||||||| ||||||| ||||| ||||||| ||| ||||||||||    
T  41615864 gatttctctgagctagatcttgctgccttgccaaatgacatattcatctggcaaacagcaagatctagctcatagaaacctcttgatatt 41615775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 458 - 552
Target Start/End: Original strand, 27949123 - 27949218
Alignment:
Q  458 tttcaagaggatttctttgagt-agatcctgctgccttgcgaaatgacatattcatctggcagacagcaaaatctaactcatagcaacttcttgat 552  Q
    |||||||||||||||||||||| ||||| |||| |||||  ||||||| ||||||||||||||  ||||| ||||||||||||| ||| |||||||    
T  27949123 tttcaagaggatttctttgagttagatcatgcttccttgtcaaatgacttattcatctggcaggaagcaagatctaactcatagaaacctcttgat 27949218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 269 - 339
Target Start/End: Complemental strand, 41615956 - 41615886
Alignment:
Q  269 ttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagacccttt 339  Q
    |||||||||||||||||| ||  |||||||| | || |||||| ||||||| |||||||||||||||||||    
T  41615956 ttccggattttataatcctgatagcatgaagttgtttcggattttaaagtctgaactgcatcagacccttt 41615886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 97
Target Start/End: Original strand, 4132567 - 4132637
Alignment:
Q  27 ttatcaatagagctattgtgttgaacacaaactttcggttgcacattctcggaccggccttcatctttatt 97  Q
    ||||||| ||||| |||||||| |||||||||||||||  |||||||||| |||| | |||| ||||||||    
T  4132567 ttatcaaaagagccattgtgttcaacacaaactttcgggggcacattctcagacctgacttcgtctttatt 4132637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 203; Significance: 1e-110; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 264 - 622
Target Start/End: Complemental strand, 6605549 - 6605174
Alignment:
Q  264 agggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagaccctttatttggttcgtttttgttgcgaat 363  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| ||||| |||    
T  6605549 agggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactacatcagaccctttatttggatcgttttcgttgccaat 6605450  T
Q  364 gccttggnnnnnnntagaacaaaggtacataacataaatagaagcaaaatctaa-----------------aaccataataacagaaatgatgaattttt 446  Q
    |||||||       ||||||||||||||||||||||||||||||||| ||  ||                 || |||||||||| ||||||||||| |||    
T  6605449 gccttggaaaaaa-tagaacaaaggtacataacataaatagaagcaacataaaacaaataaacagttaaaaaaacataataacataaatgatgaatcttt 6605351  T
Q  447 tgggaagttgttttcaagaggatttctttgagt-agatcctgctgccttgcgaaatgacatattcatctggcagacagcaaaatctaactcatagcaact 545  Q
    ||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||  |||||||||||||||||     
T  6605350 tgggaaggtgttttcaagaggatttctttgagttagatcctgctgccttgccaaatgacatattcatctggcagtcagcattatctaactcatagcaacc 6605251  T
Q  546 tcttgatatttttgagttatctatctatcaaggaggcatcaatgaatatctatatatttttgaaagcatgttgagga 622  Q
    ||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||| | |||||||||||    
T  6605250 tcttgatatttttgagttatccatctatcaaggaggcatcaaggagtatctatatatttttgacaacatgttgagga 6605174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 177; E-Value: 5e-95
Query Start/End: Original strand, 262 - 622
Target Start/End: Complemental strand, 12524847 - 12524467
Alignment:
Q  262 tgagggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagacccttta-tttggttcgtttttgttgcg 360  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  ||||| ||||||| |||||     
T  12524847 tgagggtttctggattttataatccggaatgcatgaagctattccggattttaaagtccgaactgcatcagacccttttgtttggatcgttttcgttgca 12524748  T
Q  361 aatgccttggnnnnnnntagaacaaaggtacataacataaatagaagcaaaatct------------------aaaaccataataacagaaatgatgaat 442  Q
    ||||||||||       ||||||||||||||||||||||||| ||||||| ||                    |||||||||||||||||||||||||||    
T  12524747 aatgccttggaaaaaa-tagaacaaaggtacataacataaattgaagcaacataagacaaataaacagttaaaaaaaccataataacagaaatgatgaat 12524649  T
Q  443 -tttttgggaagttgttttcaagaggatttctttgagt-agatcctgctgccttgcgaaatgacatattcatctggcagacagcaaaatctaactcatag 540  Q
     |||||||||||  |||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||| |||||| |||||||||||||    
T  12524648 ctttttgggaaggagttttcaagaggatttctttgagttagatcctgctgtcttgccaaatgacatattcatctggcaggcagcaagatctaactcatag 12524549  T
Q  541 caacttcttgatatttttgagttatctatctatcaaggaggcatcaatgaatatctatatatttttgaaagcatgttgagga 622  Q
    |||| |||||||||||||||||||||||| |||||||||||||||||  | ||||||||||||||||| | |||| ||||||    
T  12524548 caacctcttgatatttttgagttatctatgtatcaaggaggcatcaagcagtatctatatatttttgacaacatgctgagga 12524467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 262 - 608
Target Start/End: Original strand, 39598406 - 39598772
Alignment:
Q  262 tgagggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagacccttta-tttggttcgtttttgttgcg 360  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  ||||| ||||||| |||||     
T  39598406 tgagggtttccggattttataatccggaatgcatgaagctattccggattttaaagtccgaactgcatcagacccttttgtttggatcgttttcgttgca 39598505  T
Q  361 aatgccttggnnnnnnntagaacaaaggtacataacataaatagaagcaaaatct-------------------aaaaccataataacagaaatgatgaa 441  Q
    |||||||||        ||||||||||||||||||||||||| ||||||| ||                     ||||||||||||||||||||||||||    
T  39598506 aatgccttg-aaaaaaatagaacaaaggtacataacataaattgaagcaacatgagaaaaataaacagttaaaaaaaaccataataacagaaatgatgaa 39598604  T
Q  442 ttttttgggaagttgttttcaagaggatttctttgagt-agatcctgctgccttgcgaaatgacatattcatctggcagacagcaaaatctaactcatag 540  Q
    ||||||| |||| ||||||||||||||||||||||||| | ||||||||||||||| |||||| ||||||||||||||  ||||||||| ||||||||||    
T  39598605 ttttttgagaaggtgttttcaagaggatttctttgagttatatcctgctgccttgccaaatgatatattcatctggcaagcagcaaaatttaactcatag 39598704  T
Q  541 caacttcttgatatttttgagttatctatctatcaaggaggcatcaatgaatatctatatatttttga 608  Q
     ||| |||||||||||||||||||||| | ||||||||||||||||| || |||||||||||||||||    
T  39598705 taacctcttgatatttttgagttatctctgtatcaaggaggcatcaaggagtatctatatatttttga 39598772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 262 - 622
Target Start/End: Complemental strand, 3475204 - 3474824
Alignment:
Q  262 tgagggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagacccttta--tttggttcgtttttgttgc 359  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||||   ||||| ||||||| |||||    
T  3475204 tgagggtttccggattttataatctggaatgcatgaagctattccggattttaaagtccgaactgcataagacccttttgttttggatcgttttcgttgc 3475105  T
Q  360 gaatgccttggnnnnnnntagaacaaaggtacataacataaatagaagcaaaatct------------------aaaaccataataacagaaatgatgaa 441  Q
     |||||||||        ||||||| ||||||||||||||||| ||||||| ||                    ||||||||||| | ||||||||||||    
T  3475104 aaatgccttg-aaaaaaatagaacataggtacataacataaattgaagcaacattagacaaataaacagttaaaaaaaccataatgatagaaatgatgaa 3475006  T
Q  442 ttttttgggaagttgttttcaagaggatttctttgagt-agatcctgctgccttgcgaaatgacatattcatctggcagacagcaaaatctaactcatag 540  Q
    | |||||||||| ||||||||||| ||||||||||||| ||||| || |||||||  ||||||| |||| ||||| |||||| ||| |||||||||||||    
T  3475005 tcttttgggaaggtgttttcaagatgatttctttgagttagatcatgttgccttgtcaaatgacttatttatctgacagacaacaagatctaactcatag 3474906  T
Q  541 caacttcttgatatttttgagttatctatctatcaaggaggcatcaatgaatatctatatatttttgaaagcatgttgagga 622  Q
    |||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| ||||||    
T  3474905 caacatcttaatatttttgagttatctctctatcaaggaggcatcaatgaatatctatatatttttgacagcatgctgagga 3474824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 416 - 622
Target Start/End: Complemental strand, 5749675 - 5749468
Alignment:
Q  416 aaaaccataataacagaaatgatgaattttttgggaagttgttttcaagaggatttctttgagt-agatcctgctgccttgcgaaatgacatattcatct 514  Q
    ||||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||  |||||||||||||||||    
T  5749675 aaaaccataataacataaatgatgaatcttttgggaaggtgttttcaagaggatttctttgagttagatcctgctgccttgtcaaatgacatattcatct 5749576  T
Q  515 ggcagacagcaaaatctaactcatagcaacttcttgatatttttgagttatctatctatcaaggaggcatcaatgaatatctatatatttttgaaagcat 614  Q
      |||  ||||| |||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||| |||||    
T  5749575 aacaggtagcaagatctaactcataacaacctcttgatatttttgagttatctatgtatcaaggaggcatcaaggagtatctatatatttttgatagcat 5749476  T
Q  615 gttgagga 622  Q
    ||||||||    
T  5749475 gttgagga 5749468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 128; E-Value: 8e-66
Query Start/End: Original strand, 416 - 622
Target Start/End: Complemental strand, 10222983 - 10222776
Alignment:
Q  416 aaaaccataataacagaaatgatgaattttttgggaagttgttttcaagaggatttctttgagt-agatcctgctgccttgcgaaatgacatattcatct 514  Q
    |||| |||||| | ||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||    
T  10222983 aaaatcataatgatagaaatgatgaatcttttgggaaggtgttttcaagaggatttctttgagttagatcatgctgccttgccaaatgacatattcatct 10222884  T
Q  515 ggcagacagcaaaatctaactcatagcaacttcttgatatttttgagttatctatctatcaaggaggcatcaatgaatatctatatatttttgaaagcat 614  Q
    | ||  |||||| ||||||||||||||||| ||||||| |||||||||||||||| |||||||||||||||||  | ||||||||||||||||| |||||    
T  10222883 gacatgcagcaagatctaactcatagcaacctcttgatttttttgagttatctatgtatcaaggaggcatcaagaagtatctatatatttttgacagcat 10222784  T
Q  615 gttgagga 622  Q
    ||||||||    
T  10222783 gttgagga 10222776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 288 - 581
Target Start/End: Original strand, 21191137 - 21191452
Alignment:
Q  288 gaatgcatgaagctattccggattataaagtccgaactgcatcagaccctttatttggttcgtttttgttgcgaatgccttgg-nnnnnnntagaacaaa 386  Q
    ||||||||||||||||| |||||||||||||  |||||||||||||| |||||| ||| ||||||| ||||||||||||||||        |||||||||    
T  21191137 gaatgcatgaagctatttcggattataaagtttgaactgcatcagacgctttatatggatcgttttcgttgcgaatgccttggaaaaaaaatagaacaaa 21191236  T
Q  387 ggtacataacataaatagaagcaaaat-------ctaaa-------------accataataacagaaatgatgaattttttgggaagttgttttcaagag 466  Q
    |||||||||||||||||||||||| ||        ||||             |||||||||||||||||||||||| |||||||||| | ||||||||||    
T  21191237 ggtacataacataaatagaagcaacataagacaaataaacagttaaaaaaaaaccataataacagaaatgatgaatcttttgggaaggtattttcaagag 21191336  T
Q  467 gatttctttgag-tagatcctgctgccttgcgaaatgacatattcatctggcagacagcaaaatctaactcatagcaacttcttgatatttttgagttat 565  Q
    ||||| |||| | |||||| ||||||||||| ||||||||||||||||||||||  ||||| ||||||||||||||||| ||||||||||||| ||||||    
T  21191337 gatttatttgcgttagatcatgctgccttgccaaatgacatattcatctggcaggtagcaagatctaactcatagcaacctcttgatattttttagttat 21191436  T
Q  566 ctatctatcaaggagg 581  Q
    ||||||||||||||||    
T  21191437 ctatctatcaaggagg 21191452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 416 - 622
Target Start/End: Original strand, 14270826 - 14271033
Alignment:
Q  416 aaaaccataataacagaaatgatgaattttttgggaagttgttttcaagaggatttctttgagtag-atcctgctgccttgcgaaatgacatattcatct 514  Q
    ||||||||||||||| ||||| ||||| ||| |||||| ||||||||||||||||||||| |||   |||||||| |||||| |||||||||||||||||    
T  14270826 aaaaccataataacataaatgttgaatctttcgggaaggtgttttcaagaggatttctttaagttctatcctgctaccttgccaaatgacatattcatct 14270925  T
Q  515 ggcagacagcaaaatctaactcatagcaacttcttgatatttttgagttatctatctatcaaggaggcatcaatgaatatctatatatttttgaaagcat 614  Q
    ||||| ||| |  ||| ||||||||| ||| |||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||| |||||    
T  14270926 ggcaggcagaaggatcgaactcatagaaacctcttgatatttttgagttatctatatatcaaggaggcatcaaggagtatctatatatttttgacagcat 14271025  T
Q  615 gttgagga 622  Q
    | ||||||    
T  14271026 gctgagga 14271033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 416 - 580
Target Start/End: Complemental strand, 10312940 - 10312775
Alignment:
Q  416 aaaaccataataacagaaatgatgaattttttgggaagttgttttcaagaggatttctttgag-tagatcctgctgccttgcgaaatgacatattcatct 514  Q
    |||| |||||||||| ||||||||||| |||||||||| |||||||||||||||||||||||| |||||||||||| ||||| | |||||||||||||||    
T  10312940 aaaaacataataacataaatgatgaatcttttgggaaggtgttttcaagaggatttctttgagctagatcctgctgacttgccacatgacatattcatct 10312841  T
Q  515 ggcagacagcaaaatctaactcatagcaacttcttgatatttttgagttatctatctatcaaggag 580  Q
    |||||||| ||| ||||||||||||||||| |||||||||||||||||||||| | ||||||||||    
T  10312840 ggcagacatcaagatctaactcatagcaacctcttgatatttttgagttatctgtgtatcaaggag 10312775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 416 - 579
Target Start/End: Original strand, 4851706 - 4851869
Alignment:
Q  416 aaaaccataataacagaaatgatgaattttttgggaagttgttttcaagaggatttctttgag-tagatcctgctgccttgcgaaatgacatattcatct 514  Q
    |||| |||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |||||| ||||||||||| |||||||||||||||||    
T  4851706 aaaatcataataacagaaatgatgaatcttttgggaaggtgttttcaagaggatttctttgagttagatcatgctgccttgccaaatgacatattcatct 4851805  T
Q  515 ggcagacagcaaaatctaactcatagcaacttcttgatatttttgagttatctatctatcaagga 579  Q
    ||||| || ||| |||||||||||| |||| |||||||| ||||||||||||||| |||||||||    
T  4851806 ggcaggcaacaagatctaactcataacaacctcttgata-ttttgagttatctatgtatcaagga 4851869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 262 - 410
Target Start/End: Complemental strand, 10313115 - 10312966
Alignment:
Q  262 tgagggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagaccc-tttatttggttcgtttttgttgcg 360  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| ||| ||||| ||||||| |||||     
T  10313115 tgagggtttccggattttataatccggaatgcatgaagctattccggattttaaagtctgaactgcatcagacccttttgtttggatcgttttcgttgca 10313016  T
Q  361 aatgccttggnnnnnnntagaacaaaggtacataacataaatagaagcaa 410  Q
    ||||||||||       ||||||||||||||||||||||||| |||||||    
T  10313015 aatgccttggaaaaaaatagaacaaaggtacataacataaattgaagcaa 10312966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 262 - 410
Target Start/End: Complemental strand, 22334837 - 22334688
Alignment:
Q  262 tgagggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagaccc-tttatttggttcgtttttgttgcg 360  Q
    ||||||||||||||||||||||||| ||||||| |||||||||  ||||| |||||||||||||||||||||||| ||| ||||| ||||||| |||||     
T  22334837 tgagggtttccggattttataatccagaatgcaagaagctattttggattttaaagtccgaactgcatcagacccttttgtttggatcgttttcgttgca 22334738  T
Q  361 aatgccttggnnnnnnntagaacaaaggtacataacataaatagaagcaa 410  Q
    ||||||||||       ||||||||||||||||||||||||| |||||||    
T  22334737 aatgccttggaaaaaaatagaacaaaggtacataacataaattgaagcaa 22334688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 263 - 410
Target Start/End: Complemental strand, 7199417 - 7199269
Alignment:
Q  263 gagggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagacc-ctttatttggttcgtttttgttgcga 361  Q
    ||||||||||| |||||||||||| |||||||||||||||||||| ||| ||||||| |||||||||||||||  ||| ||||  ||||||||||||| |    
T  7199417 gagggtttccgaattttataatccagaatgcatgaagctattccgaattttaaagtctgaactgcatcagaccattttgtttgaatcgtttttgttgcaa 7199318  T
Q  362 atgccttggnnnnnnntagaacaaaggtacataacataaatagaagcaa 410  Q
    |||||||||       ||||||||||||||||||||||||| |||||||    
T  7199317 atgccttggaaaaaaatagaacaaaggtacataacataaattgaagcaa 7199269  T

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Target: chr1; HSP #14
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 262 - 406
Target Start/End: Original strand, 14270650 - 14270794
Alignment:
Q  262 tgagggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagaccc-tttatttggttcgtttttgttgcg 360  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||| ||| ||||| ||||||| |||||     
T  14270650 tgagggtttccggatgttataatccggaatgcatgaagctattccggattttaaagtcaggactgcatcagacccttttgtttggatcgttttcgttgca 14270749  T
Q  361 aatgccttggnnnnnnntagaacaaaggtacataacataaatagaa 406  Q
    ||||||||||       ||||||||||| |||||||||||||||||    
T  14270750 aatgccttgg-aaaaaatagaacaaaggcacataacataaatagaa 14270794  T

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Target: chr1; HSP #15
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 416 - 608
Target Start/End: Complemental strand, 7199242 - 7199053
Alignment:
Q  416 aaaaccataataacagaaatgatgaattttttgggaagttgttttcaagaggatttctttgagt-agatcctgctgccttgcgaaatgacatattcatct 514  Q
    ||||||||||||||| |||||||||||  ||||||||| ||||||||||||||||||||||||| ||||| || || || || | ||||   ||  ||||    
T  7199242 aaaaccataataacataaatgatgaatcgtttgggaaggtgttttcaagaggatttctttgagttagatcgtgttgtct-gccagatga---at--atct 7199149  T
Q  515 ggcagacagcaaaatctaactcatagcaacttcttgatatttttgagttatctatctatcaaggaggcatcaatga--atatctatatatttttga 608  Q
    ||||||||| |  |||||||||||| |||| |||||||||||||||||||| | | ||||||||||||||||| ||  |||| |||||||||||||    
T  7199148 ggcagacagtacgatctaactcataacaacctcttgatatttttgagttatatgtgtatcaaggaggcatcaaggagtatatatatatatttttga 7199053  T

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Target: chr1; HSP #16
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 263 - 410
Target Start/End: Original strand, 18277118 - 18277265
Alignment:
Q  263 gagggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagaccc-tttatttggttcgtttttgttgcga 361  Q
    |||||||| | |||||||||||| ||||||||||||||||||||||||| |||||||||||||| ||||||||| ||| ||| | ||||||| || || |    
T  18277118 gagggttttcagattttataatctggaatgcatgaagctattccggattttaaagtccgaactgtatcagacccttttgtttagatcgttttcgtagcaa 18277217  T
Q  362 atgccttggnnnnnnntagaacaaaggtacataacataaatagaagcaa 410  Q
    |||||||||       ||||||||||| ||||||||||||| |||||||    
T  18277218 atgccttgg-aaaaaatagaacaaaggaacataacataaattgaagcaa 18277265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 264 - 365
Target Start/End: Complemental strand, 22817415 - 22817314
Alignment:
Q  264 agggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagaccctttatttggttcgtttttgttgcgaat 363  Q
    ||||||||| ||||||||||||||||| |||||||| |  |||||||| |||| ||||||||||||||| |||||||||||| ||||||| ||| |||||    
T  22817415 agggtttccagattttataatccggaaagcatgaaggtggtccggattgtaaaatccgaactgcatcaggccctttatttggatcgttttcgttacgaat 22817316  T
Q  364 gc 365  Q
    ||    
T  22817315 gc 22817314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 458 - 555
Target Start/End: Complemental strand, 7564279 - 7564180
Alignment:
Q  458 tttcaagaggatttctttgag-tagatcctgctgccttgcgaaatgacatattcatctggcagacagcaa-aatctaactcatagcaacttcttgatatt 555  Q
    |||||||||||||||| |||  |||||||||||||||||| |||||||||||||||||||||| | |||| |||||| ||||||| ||| ||||||||||    
T  7564279 tttcaagaggatttctctgatctagatcctgctgccttgccaaatgacatattcatctggcaggctgcaataatctagctcatagaaacctcttgatatt 7564180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 458 - 552
Target Start/End: Original strand, 29251226 - 29251321
Alignment:
Q  458 tttcaagaggatttctttgagt-agatcctgctgccttgcgaaatgacatattcatctggcagacagcaaaatctaactcatagcaacttcttgat 552  Q
    |||||||||||||||||||||| |||||| ||| |||||| ||||||| ||||||| ||||||||| ||| ||||||||||||| ||| |||||||    
T  29251226 tttcaagaggatttctttgagttagatcccgctaccttgccaaatgacttattcatttggcagacaacaagatctaactcatagaaacctcttgat 29251321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 269 - 410
Target Start/End: Complemental strand, 7564511 - 7564369
Alignment:
Q  269 ttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagaccc-tttatttggttcgtttttgttgcgaatgcct 367  Q
    |||||||||||||||||||||   ||||||| | ||||||||| ||||||||||||| |||||| ||| |||||||||   |||||  | ||||||| ||    
T  7564511 ttccggattttataatccggataacatgaagttgttccggattttaaagtccgaactacatcaggcccttttatttggagtgttttcttggcgaatggct 7564412  T
Q  368 tggnnnnnnntagaacaaaggtacataacataaatagaagcaa 410  Q
    |||       |||||||||||||||||||||||| ||||||||    
T  7564411 tggaaaaaaatagaacaaaggtacataacataaaaagaagcaa 7564369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 303 - 410
Target Start/End: Complemental strand, 10223116 - 10223007
Alignment:
Q  303 ttccggattataaagtccgaactgcatcagacccttta-tttggttcgtttttgttgcgaatgccttggnnnnnnn-tagaacaaaggtacataacataa 400  Q
    ||||||||| ||||||| |||||||||||||||||||  ||||| ||||||| ||||| ||||||||||        |||||||||||||||||||||||    
T  10223116 ttccggattttaaagtctgaactgcatcagacccttttgtttggatcgttttcgttgcaaatgccttggaaaaaaaatagaacaaaggtacataacataa 10223017  T
Q  401 atagaagcaa 410  Q
    || |||||||    
T  10223016 attgaagcaa 10223007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 262 - 406
Target Start/End: Original strand, 29250880 - 29251019
Alignment:
Q  262 tgagggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagaccctttatttggttcgtttttgttgcga 361  Q
    |||||| |||||||||||||| |  | |||||||| || |  ||||||||||||| ||| |||||||     |||| |||||||  ||||||||| ||||    
T  29250880 tgaggggttccggattttatattttgaaatgcatggagtttgtccggattataaaatccaaactgca-----ccctgtatttggagcgtttttgtggcga 29250974  T
Q  362 atgccttggnnnnnnntagaacaaaggtacataacataaatagaa 406  Q
    |||  ||||       |||||||||||||||||||||||||||||    
T  29250975 atggtttggaaaaaaatagaacaaaggtacataacataaatagaa 29251019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 501 - 555
Target Start/End: Complemental strand, 30517924 - 30517870
Alignment:
Q  501 tgacatattcatctggcagacagcaaaatctaactcatagcaacttcttgatatt 555  Q
    ||||| ||||||||||||| |||||| | ||||||||||| ||| ||||||||||    
T  30517924 tgacaaattcatctggcaggcagcaagaactaactcatagaaacctcttgatatt 30517870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 416 - 472
Target Start/End: Complemental strand, 22334660 - 22334604
Alignment:
Q  416 aaaaccataataacagaaatgatgaattttttgggaagttgttttcaagaggatttc 472  Q
    ||||||||||||||| | ||||||||   ||||||||| ||||| ||||||||||||    
T  22334660 aaaaccataataacatatatgatgaaacatttgggaaggtgtttacaagaggatttc 22334604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 262 - 622
Target Start/End: Complemental strand, 41974508 - 41974127
Alignment:
Q  262 tgagggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagacccttta-tttggttcgtttttgttgcg 360  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||  ||||| ||||||| ||||      
T  41974508 tgagggtttccggattttataatccggaatgcatgaagctattccggattttaaagtccgaactacatcagacccttttgtttggatcgttttcgttgaa 41974409  T
Q  361 aatgccttggnnnnnnntagaacaaaggtacataacataaatagaagca---------aaatc------taaaa----ccataataacagaaatgatgaa 441  Q
    ||||||||||       ||||||||||||||||||||||||| ||| ||         ||||       |||||    ||||||||||| ||||||||||    
T  41974408 aatgccttggaaaaaaatagaacaaaggtacataacataaattgaaacaccatgagacaaataaacagttaaaaataaccataataacataaatgatgaa 41974309  T
Q  442 ttttttgggaagttgttttcaagaggatttctttgagt-agatcctgctgccttgcgaaatgacatattcatctggcagacagcaaaatctaactcatag 540  Q
    | |||||||||| ||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  41974308 tcttttgggaaggtgttttcaagaggatttctttgagttagatcttgctgccttgccaaatgacatattcatctggcagacagcaagatctaactcatag 41974209  T
Q  541 caacttcttgatatttttgagttatctatctatcaaggaggcatcaatgaatatctatatatttttgaaagcatgttgagga 622  Q
    |||| |||||||||||||||||||||| | ||||||||||||||||| || ||||||||||||||||| |||||||||||||    
T  41974208 caacctcttgatatttttgagttatctctgtatcaaggaggcatcaaggagtatctatatatttttgacagcatgttgagga 41974127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 262 - 622
Target Start/End: Complemental strand, 49327254 - 49326874
Alignment:
Q  262 tgagggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagacccttta-tttggttcgtttttgttgcg 360  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||  ||||| ||||||| |||||     
T  49327254 tgagggtttctggattttataatccggaatgcatgaagctattccgaattttaaagtccgaactgcatcagacccttttgtttggatcgttttcgttgca 49327155  T
Q  361 aatgccttggnnnnnnn-tagaacaaaggtacataacataaatagaagcaaaatct-----------------aaaaccataataacagaaatgatgaat 442  Q
    ||||||||||        ||||| |||||||||||| |||||| ||||||| ||                   ||||||||||||||| |||||||||||    
T  49327154 aatgccttgggaaaaaaatagaataaaggtacataatataaattgaagcaacatgagaaaataaacagttaaaaaaaccataataacataaatgatgaat 49327055  T
Q  443 tttttgggaagttgttttcaagaggatttctttgagt-agatcctgctgccttgcgaaatgacatattcatctggcagacagcaaaatctaactcatagc 541  Q
     |||||||||  ||||||||||||||||||||||||| ||||  ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  49327054 cttttgggaatgtgttttcaagaggatttctttgagttagatgttgctgccttgccaaatgacatattcatctggcagacagcaagatctaactcatagc 49326955  T
Q  542 aacttcttgatatttttgagttatctatctatcaaggaggcatcaatgaatatctatatatttttgaaagcatgttgagga 622  Q
    ||| |||||||||||||||||||||| | ||||||||||||||||| || ||||||||||||||||| | |||| ||||||    
T  49326954 aacctcttgatatttttgagttatctgtgtatcaaggaggcatcaaggagtatctatatatttttgacaacatgatgagga 49326874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 274 - 621
Target Start/End: Original strand, 9127237 - 9127605
Alignment:
Q  274 gattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagacccttta-tttggttcgtttttgttgcgaatgccttggnn 372  Q
    |||||||||||||||||||| ||||| ||||||||||| ||||||  |||||||||||||||||||  ||||| ||||||| ||||| | ||||||||      
T  9127237 gattttataatccggaatgcttgaagttattccggattgtaaagtttgaactgcatcagacccttttgtttggatcgttttcgttgcaattgccttggaa 9127336  T
Q  373 nnnnntagaacaaaggtacataacataaatagaagcaaaatct-------------------aaaaccataataacagaaatgatgaattttttgggaag 453  Q
         ||||||||||||||||||||||||| ||||||| ||                     ||||| ||||||||||||||||||||| ||||||||||    
T  9127337 aaaaatagaacaaaggtacataacataaattgaagcaacataagataaataaacagttaaaaaaaacgataataacagaaatgatgaatcttttgggaag 9127436  T
Q  454 ttgttttcaagaggatttctttgagt-agatcctgctgccttgcgaaatgacatattcatctggcagacagcaaaatctaactcatagcaacttcttgat 552  Q
     ||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||| || |||||| ||||||||||||||||| |||||||    
T  9127437 gtgttttcaagaggatttctttgagttagatcatgctgccttgccaaatgacatattcatctggtaggcagcaagatctaactcatagcaacctcttgat 9127536  T
Q  553 atttttgagttatctatctatcaaggaggcatcaatgaatatctatatatttttgaaagcatgttgagg 621  Q
    ||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||| |||||    
T  9127537 atttttgagttatctatctatcaaggaggcatcaaggagtatctatatatttttgacagcatgatgagg 9127605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 274 - 621
Target Start/End: Original strand, 9135344 - 9135712
Alignment:
Q  274 gattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagacccttta-tttggttcgtttttgttgcgaatgccttggnn 372  Q
    |||||||||||||||||||| ||||| ||||||||||| ||||||  |||||||||||||||||||  ||||| ||||||| ||||| | ||||||||      
T  9135344 gattttataatccggaatgcttgaagttattccggattgtaaagtttgaactgcatcagacccttttgtttggatcgttttcgttgcaattgccttggaa 9135443  T
Q  373 nnnnntagaacaaaggtacataacataaatagaagcaaaatct-------------------aaaaccataataacagaaatgatgaattttttgggaag 453  Q
         ||||||||||||||||||||||||| ||||||| ||                     ||||| ||||||||||||||||||||| ||||||||||    
T  9135444 aaaaatagaacaaaggtacataacataaattgaagcaacataagataaataaacagttaaaaaaaacgataataacagaaatgatgaatcttttgggaag 9135543  T
Q  454 ttgttttcaagaggatttctttgagt-agatcctgctgccttgcgaaatgacatattcatctggcagacagcaaaatctaactcatagcaacttcttgat 552  Q
     ||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||| || |||||| ||||||||||||||||| |||||||    
T  9135544 gtgttttcaagaggatttctttgagttagatcatgctgccttgccaaatgacatattcatctggtaggcagcaagatctaactcatagcaacctcttgat 9135643  T
Q  553 atttttgagttatctatctatcaaggaggcatcaatgaatatctatatatttttgaaagcatgttgagg 621  Q
    ||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||| |||||    
T  9135644 atttttgagttatctatctatcaaggaggcatcaaggagtatctatatatttttgacagcatgatgagg 9135712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 262 - 619
Target Start/End: Complemental strand, 47374706 - 47374328
Alignment:
Q  262 tgagggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagacccttta-tttggttcgtttttgttgcg 360  Q
    |||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||  ||||| ||||||| ||||      
T  47374706 tgagcgtttccggattttataatccgaaatgcatgaagctattccggattttaaagtccgaactgcatcagaaccttttgtttggatcgttttcgttgta 47374607  T
Q  361 aatgccttggnnnnnnntagaacaaaggtacataacataaatagaagcaaaatc---------------taaaa----ccataataacagaaatgatgaa 441  Q
    | |||||| |       ||||||||||||||| ||||||||| ||| ||| ||                |||||    ||||||||||||||||||||||    
T  47374606 attgccttagaaaaaaatagaacaaaggtacacaacataaattgaaacaacataagacaaatagacagttaaaaaaagccataataacagaaatgatgaa 47374507  T
Q  442 ttttttgggaagttgttttcaagaggatttctttgagt-agatcctgctgccttgcgaaatgacatattcatctggcagacagcaaaatctaactcatag 540  Q
    | |||| ||||| ||||||||||||||||||||||||| ||||| || |||||||| ||||||||||||||||||| ||||||||| |||||||||||||    
T  47374506 tcttttaggaaggtgttttcaagaggatttctttgagttagatcatgttgccttgccaaatgacatattcatctggtagacagcaatatctaactcatag 47374407  T
Q  541 caacttcttgatatttttgagttatctatctatcaaggaggcatcaatgaatatctatatatttttgaaagcatgttga 619  Q
    |||| |||| ||||||||||||||||| |||||||||||||||| || || ||||||||||||||||| ||||||||||    
T  47374406 caacctcttaatatttttgagttatctctctatcaaggaggcattaaagagtatctatatatttttgacagcatgttga 47374328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 262 - 615
Target Start/End: Original strand, 48062376 - 48062754
Alignment:
Q  262 tgagggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagacccttta-tttggttcgtttttgttgcg 360  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |||||||||||  ||||| ||||||| |||||     
T  48062376 tgagggtttccggattttataatccggaatgcatgaagctattccggattttaaagtctgaactgcttcagacccttttgtttggatcgttttcgttgca 48062475  T
Q  361 aatgccttggnnnnnnn----tagaacaaaggtacataacataaatagaagcaaaatct-------------------aaaaccataataacagaaatga 437  Q
    ||||||||||           ||||||||||||||||||||||||| ||||||| ||                     ||||||||||||||| ||||||    
T  48062476 aatgccttggaagaaaaaaaatagaacaaaggtacataacataaattgaagcaacatgagacaaataaacaattaaaaaaaaccataataacataaatga 48062575  T
Q  438 tgaattttttgggaagttgttttcaagaggatttctttgagt-agatcctgctgccttgcgaaatgacatattcatctggcagacagcaaaatctaactc 536  Q
    ||||| |||||||||  ||||||||||||||||||||||||| ||||| || || ||||| ||||||||||||||||||||||||||||| ||||||||     
T  48062576 tgaatcttttgggaaagtgttttcaagaggatttctttgagttagatcttgttgtcttgccaaatgacatattcatctggcagacagcaagatctaactt 48062675  T
Q  537 atagcaacttcttgatatttttgagttatctatctatcaaggaggcatcaatgaatatctatatatttttgaaagcatg 615  Q
    ||| |||| |||||||||||||||||||||| | ||||||||||||||||| || ||||||||||||||||| ||||||    
T  48062676 ataacaacctcttgatatttttgagttatctgtgtatcaaggaggcatcaaagagtatctatatatttttgacagcatg 48062754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 262 - 608
Target Start/End: Complemental strand, 8486448 - 8486080
Alignment:
Q  262 tgagggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagacccttta-tttggttcgtttttgttgcg 360  Q
    |||||||||||||||||||||||| | ||||||||||||||||||||||| |||||| ||||||||||||||||||||  ||||| ||||||| |||||     
T  8486448 tgagggtttccggattttataatctgaaatgcatgaagctattccggattttaaagtgcgaactgcatcagacccttttgtttggatcgttttcgttgca 8486349  T
Q  361 aatgccttggnnnnnnn-tagaacaaaggtacataacataaatagaagca------------aaatct-------aaaaccataataacagaaatgatga 440  Q
    | ||||||||        ||||||||||||||||||||||||| ||||||            ||| |        ||||||||||||||| |||||||||    
T  8486348 attgccttggaaaaaaaatagaacaaaggtacataacataaattgaagcaacaaaagacaaaaaaacagttaaaaaaaaccataataacataaatgatga 8486249  T
Q  441 attttttgggaagttgttttcaagaggatttctttgagt-agatcctgctgccttgcgaaatgacatattcatctggcagacagcaaaatctaactcata 539  Q
    || |||||||||  ||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||| |||  |||||||||||||||||||    
T  8486248 atcttttgggaatgtgttttcaagaggatttctttgagttagatcctgctaccttgccaaatgacatattcatctagcatgcagcaaaatctaactcata 8486149  T
Q  540 gcaacttcttgatatttttgagttatctatctatcaaggaggcatcaatgaatatctatatatttttga 608  Q
    | ||| | |||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||    
T  8486148 gtaaccttttgatatttttgagttatctatgtatcaaggaggcatcaaggagtatctatatatttttga 8486080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 143; E-Value: 9e-75
Query Start/End: Original strand, 262 - 622
Target Start/End: Original strand, 16483052 - 16483432
Alignment:
Q  262 tgagggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagacccttta-tttggttcgtttttgttgcg 360  Q
    ||||| |||| | ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||  ||||| || |||| |||||     
T  16483052 tgaggatttctgaattttataatccggaatgcatgaagctattccggattttaaagtccgaactacatcagacccttttgtttggatcattttcgttgca 16483151  T
Q  361 aatgccttggnnnnnnntagaacaaaggtacataacataaatagaagcaaaatct-------------------aaaaccataataacagaaatgatgaa 441  Q
    |||||||||        ||||||||||||||||||||||||| ||||||| ||                     |||| |||||||||| ||||||||||    
T  16483152 aatgccttgaaaaaaaatagaacaaaggtacataacataaattgaagcaacatgagacaaataaacaattaaaaaaaatcataataacataaatgatgaa 16483251  T
Q  442 ttttttgggaagttgttttcaagaggatttctttgagt-agatcctgctgccttgcgaaatgacatattcatctggcagacagcaaaatctaactcatag 540  Q
    | |||||||||| ||||||||||||||||||||||| | ||||||||||||||||  ||||||||||||||||| |||| |||||| |||||||||||||    
T  16483252 tcttttgggaagatgttttcaagaggatttctttgacttagatcctgctgccttgtcaaatgacatattcatcttgcaggcagcaagatctaactcatag 16483351  T
Q  541 caacttcttgatatttttgagttatctatctatcaaggaggcatcaatgaatatctatatatttttgaaagcatgttgagga 622  Q
    |||| ||||||||||||||||||||   |||||||||||| |||||| || ||||||||||||||||| |||||| ||||||    
T  16483352 caacctcttgatatttttgagttat-agtctatcaaggagacatcaaggagtatctatatatttttgacagcatgctgagga 16483432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 418 - 659
Target Start/End: Original strand, 53394296 - 53394541
Alignment:
Q  418 aaccataataacagaaatgatgaattttttgggaagttgttttcaagaggatttctttgagta-gatcctgctgccttgcgaaatgacatattcatctgg 516  Q
    ||||||||||||| ||||||||||| |||||||||| ||||| ||||||||||| |||||||  |||| || |  ||||| |||||||||||||||||||    
T  53394296 aaccataataacataaatgatgaatcttttgggaaggtgttt-caagaggatttttttgagtttgatcatgttatcttgccaaatgacatattcatctgg 53394394  T
Q  517 cagacagcaaaatctaactcatagcaacttcttgatatttttgagttatc----tatctatcaaggaggcatcaatgaatatctatatatttttgaaagc 612  Q
    ||| |||||| |||||||||||| |||| |||||||||||||||||||||    ||||||| ||||||||| ||| || ||||||||||||||| |||||    
T  53394395 caggcagcaagatctaactcataacaacctcttgatatttttgagttatctatatatctattaaggaggcaacaaggagtatctatatatttttaaaagc 53394494  T
Q  613 atgttgaggaggttaaccatgttggcacatagagagcaatctatttg 659  Q
    ||||||||||  || |||||| |||||||||| ||||||||||||||    
T  53394495 atgttgaggatcttcaccatgctggcacatagtgagcaatctatttg 53394541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 498 - 658
Target Start/End: Complemental strand, 21979566 - 21979406
Alignment:
Q  498 aaatgacatattcatctggcagacagcaaaatctaactcatagcaacttcttgatatttttgagttatctatctatcaaggaggcatcaatgaatatcta 597  Q
    ||||||||| |||||||||||| |||||| || ||||||||| |||| ||||||||||||| |||||||||||||||||||||||| |||||| ||||||    
T  21979566 aaatgacatgttcatctggcaggcagcaagatataactcataacaacctcttgatatttttaagttatctatctatcaaggaggcagcaatgagtatcta 21979467  T
Q  598 tatatttttgaaagcatgttgaggaggttaaccatgttggcacatagagagcaatctattt 658  Q
    |||||||||||||||||| ||||||  || |||||| ||||||||||||||||||||||||    
T  21979466 tatatttttgaaagcatgatgaggatcttcaccatgctggcacatagagagcaatctattt 21979406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 498 - 658
Target Start/End: Complemental strand, 22001997 - 22001837
Alignment:
Q  498 aaatgacatattcatctggcagacagcaaaatctaactcatagcaacttcttgatatttttgagttatctatctatcaaggaggcatcaatgaatatcta 597  Q
    ||||||||| |||||||||||| |||||| || ||||||||| |||| ||||||||||||| |||||||||||||||||||||||| |||||| ||||||    
T  22001997 aaatgacatgttcatctggcaggcagcaagatataactcataacaacctcttgatatttttaagttatctatctatcaaggaggcagcaatgagtatcta 22001898  T
Q  598 tatatttttgaaagcatgttgaggaggttaaccatgttggcacatagagagcaatctattt 658  Q
    |||||||||||||||||| ||||||  || |||||| ||||||||||||||||||||||||    
T  22001897 tatatttttgaaagcatgatgaggatcttcaccatgctggcacatagagagcaatctattt 22001837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 498 - 656
Target Start/End: Original strand, 18876559 - 18876717
Alignment:
Q  498 aaatgacatattcatctggcagacagcaaaatctaactcatagcaacttcttgatatttttgagttatctatctatcaaggaggcatcaatgaatatcta 597  Q
    ||||||||| |||||||||||| || ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| || ||||||    
T  18876559 aaatgacatgttcatctggcaggcatcaagatctaactcatagcaacctcttgatatttttgagttatctatctatcaaggaggcaacaaggagtatcta 18876658  T
Q  598 tatatttttgaaagcatgttgaggaggttaaccatgttggcacatagagagcaatctat 656  Q
    |||||||||||||||||| ||||||  || |||||| |||||||||||||| |||||||    
T  18876659 tatatttttgaaagcatgctgaggatcttcaccatgctggcacatagagagaaatctat 18876717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 416 - 622
Target Start/End: Original strand, 30389285 - 30389493
Alignment:
Q  416 aaaaccataataacagaaatgatgaattttttgggaagttgttttcaagaggatttctttgagta-gatcctgctgccttgcgaaatgacatattcatct 514  Q
    ||||||||||||||| ||||| ||||| ||| | | || |||||||||||||||||||||||||  |||| ||||||||||| |||||||||||||||||    
T  30389285 aaaaccataataacataaatgttgaatctttcgtgcaggtgttttcaagaggatttctttgagttcgatcttgctgccttgccaaatgacatattcatct 30389384  T
Q  515 ggcagacagcaaaatctaactcatagcaacttcttgatatttttgagtt-atctatctatcaaggaggcatcaatgaatatctatatatttttgaaagca 613  Q
    || || ||| |  ||| ||||||||| ||| |||||||||||||||||| |||||| ||||||||||||||||| || ||||||||||||||||| ||||    
T  30389385 ggtaggcagaaggatcgaactcatagaaacctcttgatatttttgagttaatctatgtatcaaggaggcatcaaggagtatctatatatttttgacagca 30389484  T
Q  614 tgttgagga 622  Q
    || ||||||    
T  30389485 tgctgagga 30389493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 262 - 370
Target Start/End: Original strand, 18876205 - 18876313
Alignment:
Q  262 tgagggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagaccctttatttggttcgtttttgttgcga 361  Q
    |||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||| ||||| |||||||||||||| | |||||||||||||||    
T  18876205 tgagggtttccggattttataatctggaatgcatgaagttattccgaattataaagtccgagctgcaccagaccctttatttagatcgtttttgttgcga 18876304  T
Q  362 atgccttgg 370  Q
    |||||||||    
T  18876305 atgccttgg 18876313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 262 - 406
Target Start/End: Original strand, 30389110 - 30389255
Alignment:
Q  262 tgagggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagaccc-tttatttggttcgtttttgttgcg 360  Q
    |||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||| |||| ||| ||||| | ||||| |||||     
T  30389110 tgagggtttccggattttataatctggaatgcatgaagctattctggattttaaagtccgaactgcatcaaacccttttgtttggattgttttcgttgca 30389209  T
Q  361 aatgccttggnnnnnnntagaacaaaggtacataacataaatagaa 406  Q
    ||||| ||||       |||||||||||||||||||||||||||||    
T  30389210 aatgctttggaaaaaaatagaacaaaggtacataacataaatagaa 30389255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 264 - 402
Target Start/End: Complemental strand, 49440206 - 49440067
Alignment:
Q  264 agggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagaccc-tttatttggttcgtttttgttgcgaa 362  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||| ||||| ||||||| ||||| ||    
T  49440206 agggtttccgaattttataatccggaatgcatgaagctattccggattttaaagtccgaattgcatcagacccttttgtttggatcgttttcgttgcaaa 49440107  T
Q  363 tgccttggnnnnnnntagaacaaaggtacataacataaat 402  Q
    ||||||||       | ||||||||||| |||||||||||    
T  49440106 tgccttggaaaaaaattgaacaaaggtagataacataaat 49440067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 262 - 370
Target Start/End: Complemental strand, 21450106 - 21449997
Alignment:
Q  262 tgagggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagaccc-tttatttggttcgtttttgttgcg 360  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||| ||| ||||| ||||||| |||||     
T  21450106 tgagggtttccggattttataatccggaatgcatgaagctagtccggattttaaagtccgaattgcatcagacccttttgtttggatcgttttcgttgca 21450007  T
Q  361 aatgccttgg 370  Q
    ||||||||||    
T  21450006 aatgccttgg 21449997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 264 - 406
Target Start/End: Complemental strand, 44207526 - 44207382
Alignment:
Q  264 agggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagaccc-tttatttggttcgtttttgttgcgaa 362  Q
    ||||||| ||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||||| | |||| ||| ||||| ||||||||||||| ||    
T  44207526 agggttttcggattttataatcctgaatgcatgaagctattccagattttaaagtccgaactgcattatacccttttgtttggatcgtttttgttgcaaa 44207427  T
Q  363 tgccttgg-nnnnnnntagaacaaaggtacataacataaatagaa 406  Q
    ||||||||        |||||||||||||||||| ||||||||||    
T  44207426 tgccttggaaaaaaaatagaacaaaggtacataatataaatagaa 44207382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 416 - 554
Target Start/End: Complemental strand, 44207350 - 44207211
Alignment:
Q  416 aaaaccataataacagaaatgatgaattttttgggaagttgttttcaagaggatttctttgag-tagatcctgctgccttgcgaaatgacatattcatct 514  Q
    ||||||| ||||||| ||||| ||||| |||  ||||| |||||||||||||||||||||||| | |||| ||||||||||| ||||||| |||||||||    
T  44207350 aaaaccaaaataacataaatgttgaatctttcaggaaggtgttttcaagaggatttctttgagttcgatcatgctgccttgccaaatgacttattcatct 44207251  T
Q  515 ggcagacagcaaaatctaactcatagcaacttcttgatat 554  Q
    | ||| ||| |  ||| ||||||||| ||| |||||||||    
T  44207250 gacaggcagaaggatcgaactcatagaaacctcttgatat 44207211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 274 - 403
Target Start/End: Original strand, 9119459 - 9119588
Alignment:
Q  274 gattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagac-cctttatttggttcgtttttgttgcgaatgccttggnn 372  Q
    ||||||||||| |||||||| ||||||||||||||||| ||||||  |||||||||||||| | ||| ||||| ||||||| ||||| | ||||||        
T  9119459 gattttataattcggaatgcttgaagctattccggattgtaaagtttgaactgcatcagactcttttgtttggatcgttttagttgcaattgcctt-aaa 9119557  T
Q  373 nnnnntagaacaaaggtacataacataaata 403  Q
         ||||||||||||||||||||||||||    
T  9119558 aaaaatagaacaaaggtacataacataaata 9119588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 262 - 346
Target Start/End: Complemental strand, 45405584 - 45405500
Alignment:
Q  262 tgagggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagaccctttatttggt 346  Q
    |||||||||| ||||| ||||||||||||||||||||| |  ||||||||||||| | |||||  ||||||||||| ||||||||    
T  45405584 tgagggtttctggattatataatccggaatgcatgaagtttgtccggattataaaattcgaacgacatcagaccctatatttggt 45405500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 307 - 370
Target Start/End: Complemental strand, 21979850 - 21979788
Alignment:
Q  307 ggattataaagtccgaactgcatcagaccctttatttggttcgtttttgttgcgaatgccttgg 370  Q
    |||||||||||||||||||||| |||||||||||||||| ||| ||| ||||||||||||||||    
T  21979850 ggattataaagtccgaactgcaccagaccctttatttggatcg-tttcgttgcgaatgccttgg 21979788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 307 - 370
Target Start/End: Complemental strand, 22002281 - 22002219
Alignment:
Q  307 ggattataaagtccgaactgcatcagaccctttatttggttcgtttttgttgcgaatgccttgg 370  Q
    |||||||||||||||||||||| |||||||||||||||| ||| ||| ||||||||||||||||    
T  22002281 ggattataaagtccgaactgcaccagaccctttatttggatcg-tttcgttgcgaatgccttgg 22002219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 275 - 343
Target Start/End: Complemental strand, 3733521 - 3733453
Alignment:
Q  275 attttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagaccctttattt 343  Q
    |||||||| |||||||||||||| | |  || |||||||||| ||| |||||||||||||||| |||||    
T  3733521 attttatattccggaatgcatgacgtttatctggattataaaatccaaactgcatcagaccctatattt 3733453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 416 - 458
Target Start/End: Original strand, 18876378 - 18876420
Alignment:
Q  416 aaaaccataataacagaaatgatgaattttttgggaagttgtt 458  Q
    ||||||||||||||| ||||||||||| |||||||||| ||||    
T  18876378 aaaaccataataacataaatgatgaatcttttgggaaggtgtt 18876420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 179; Significance: 3e-96; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 262 - 622
Target Start/End: Complemental strand, 7255331 - 7254950
Alignment:
Q  262 tgagggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagacccttta-tttggttcgtttttgttgcg 360  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||  ||||| ||||||| |||||     
T  7255331 tgaggatttccggattttataatccggaatgcatgaagctattccggattttaaagttcgaactgcatctgacccttttgtttggatcgttttcgttgca 7255232  T
Q  361 aatgccttggnnnnnnntagaacaaaggtacataacataaatagaagcaaaatct-------------------aaaaccataataacagaaatgatgaa 441  Q
    |||| |||||       ||||||||||||||||||||||||| ||||||| ||                     ||||||||||||||||||||||||||    
T  7255231 aatgtcttggaaaaaaatagaacaaaggtacataacataaattgaagcaacataagacaaataaacagttaaaaaaaaccataataacagaaatgatgaa 7255132  T
Q  442 ttttttgggaagttgttttcaagaggatttctttgagt-agatcctgctgccttgcgaaatgacatattcatctggcagacagcaaaatctaactcatag 540  Q
    | |||||||||| ||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||| || |||||| |||||||||||||    
T  7255131 tcttttgggaagatgttttcaagaggatttctttgagttagatcctgatgccttgccaaatgacatattcatctggtaggcagcaagatctaactcatag 7255032  T
Q  541 caacttcttgatatttttgagttatctatctatcaaggaggcatcaatgaatatctatatatttttgaaagcatgttgagga 622  Q
    |||  |||| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||    
T  7255031 caatatcttaatatttttgagttatctatctatcaaggaggcatcaaggagtatctatatatttttgacagcatgttgagga 7254950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 262 - 622
Target Start/End: Complemental strand, 35585002 - 35584621
Alignment:
Q  262 tgagggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagacccttta-tttggttcgtttttgttgcg 360  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||  ||||| ||||||| |||||     
T  35585002 tgagggtttccggattttataatccggaatgcatgaagctattccggattttaaagtctgaactgcatcagacctttttgtttggatcgttttcgttgca 35584903  T
Q  361 aatgccttggnnnnnnntagaacaaaggtacataacataaatagaagcaaaatct-------------------aaaaccataataacagaaatgatgaa 441  Q
    ||||||||||       ||||||||||||||||||||||||| ||||||| ||                     ||||||||||||| ||||||||||||    
T  35584902 aatgccttggaaaaaaatagaacaaaggtacataacataaattgaagcaacattagacaaataaacagttaaaaaaaaccataataatagaaatgatgaa 35584803  T
Q  442 ttttttgggaagttgttttcaagaggatttctttgagt-agatcctgctgccttgcgaaatgacatattcatctggcagacagcaaaatctaactcatag 540  Q
    | |||||||||| ||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||| ||||| |||||| |||||||||||||    
T  35584802 tcttttgggaaggtgttttcaagaggatttctttgagttagatcatgctgccttgccaaatgacatattcatccggcaggcagcaagatctaactcatag 35584703  T
Q  541 caacttcttgatatttttgagttatctatctatcaaggaggcatcaatgaatatctatatatttttgaaagcatgttgagga 622  Q
    |||| |||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||| | |||| ||||||    
T  35584702 caacctcttgatatttttgagttatctatgtatcaaggaggcatcaaggagtatctatatatttttgacaacatgatgagga 35584621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 177; E-Value: 5e-95
Query Start/End: Original strand, 262 - 622
Target Start/End: Complemental strand, 38264983 - 38264603
Alignment:
Q  262 tgagggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagacccttta-tttggttcgtttttgttgcg 360  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |||||||  ||||| ||||||| |||||     
T  38264983 tgagggtttccggattttataatccggaatgcatgaagctattccggattttaaagtccgacctgcatcaaacccttttgtttggatcgttttcgttgca 38264884  T
Q  361 aatgccttggnnnnnnntagaacaaaggtacataacataaatagaagcaaaatct------------------aaaaccataataacagaaatgatgaat 442  Q
    |||||||||        ||||||||||||||||||||||||| ||||||| ||                    |||||||| ||||||||||||||||||    
T  38264883 aatgccttgaaaaaaaatagaacaaaggtacataacataaattgaagcaacataagacaaataaacagttaaaaaaaccatgataacagaaatgatgaat 38264784  T
Q  443 tttttgggaagttgttttcaagaggatttctttgagt-agatcctgctgccttgcgaaatgacatattcatctggcagacagcaaaatctaactcatagc 541  Q
     |||||||||| ||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||| || |||||| ||||||||||||||    
T  38264783 cttttgggaagatgttttcaagaggatttctttgagttagatcatgctgccttgccaaatgacatattcatctggaaggcagcaagatctaactcatagc 38264684  T
Q  542 aacttcttgatatttttgagttatctatctatcaaggaggcatcaatgaatatctatatatttttgaaagcatgttgagga 622  Q
    ||| |||| ||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||| |||||| ||||||    
T  38264683 aacctcttaatatttttgagttatctatgtatcaaggaggcatcaaggagtatctatatatttttgacagcatgctgagga 38264603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 262 - 622
Target Start/End: Complemental strand, 38257408 - 38257028
Alignment:
Q  262 tgagggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagacccttta-tttggttcgtttttgttgcg 360  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |||||||  ||||| ||||||| |||||     
T  38257408 tgagggtttccggattttataatccggaatgcatgaagctattccggattttaaagtccgacctgcatcaaacccttttgtttggatcgttttcgttgca 38257309  T
Q  361 aatgccttggnnnnnnntagaacaaaggtacataacataaatagaagcaaaatct------------------aaaaccataataacagaaatgatgaat 442  Q
    |||||||||        ||||||||||||||||||||||||| ||||||| ||                    |||||||| ||||||||||||||||||    
T  38257308 aatgccttgaaaaaaaatagaacaaaggtacataacataaattgaagcaacataagacaaataaacagttaaaaaaaccatgataacagaaatgatgaat 38257209  T
Q  443 tttttgggaagttgttttcaagaggatttctttgagt-agatcctgctgccttgcgaaatgacatattcatctggcagacagcaaaatctaactcatagc 541  Q
     |||||||||| ||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||| || || ||| ||||||||||||||    
T  38257208 cttttgggaagatgttttcaagaggatttctttgagttagatcatgctgccttgccaaatgacatattcatctggaaggcaacaagatctaactcatagc 38257109  T
Q  542 aacttcttgatatttttgagttatctatctatcaaggaggcatcaatgaatatctatatatttttgaaagcatgttgagga 622  Q
    ||| |||| ||||||||||||||||||| ||||||||||||||||| || ||| ||||||||||||| |||||| ||||||    
T  38257108 aacctcttaatatttttgagttatctatatatcaaggaggcatcaaggagtatatatatatttttgacagcatgctgagga 38257028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 266 - 659
Target Start/End: Complemental strand, 24687455 - 24687040
Alignment:
Q  266 ggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagacccttta-tttggttcgtttttgttgcgaatg 364  Q
    |||||||||||||||||||||| || |||||||| |  | ||||||||||||||||||||||| ||||| ||||  ||||| |||||||  |||||| ||    
T  24687455 ggtttccggattttataatccgaaaagcatgaaggtggttcggattataaagtccgaactgcaccagactcttttgtttggatcgttttcattgcgattg 24687356  T
Q  365 ccttggnnnnnnn-tagaacaaaggtacataacataaatagaagcaaaatct-------------------aaaaccataataacagaaatgatgaattt 444  Q
     |||||        ||||||||||||||||||||||||||||||||| ||                     |||||||||||||||||||||| |||| |    
T  24687355 tcttggaaaaaaaatagaacaaaggtacataacataaatagaagcaacataagacaaataaacagttaaaaaaaaccataataacagaaatgacgaatct 24687256  T
Q  445 tttgggaagttgttttcaagaggatttctttgagt-agatcctgctgccttgcgaaatgacatattcatctggcagacagcaaaatctaactcatagcaa 543  Q
    ||||||||| ||||||||||||||||||||||||| ||||| ||||| ||||| | |||||||||||||||||||| |||||| ||||||||||||||||    
T  24687255 tttgggaaggtgttttcaagaggatttctttgagttagatcttgctggcttgccacatgacatattcatctggcaggcagcaagatctaactcatagcaa 24687156  T
Q  544 cttcttgatatttttgagttatctatctatcaaggaggcatcaatgaatatctatatatttttgaaagcatgttgaggaggttaaccatgttggcacata 643  Q
    | |||||||||||||||||||| |||||||||| |||||| ||| || ||||||||||| |||||||||||||||||||  || | |||| |||||||||    
T  24687155 cctcttgatatttttgagttatttatctatcaaagaggcagcaaggagtatctatatatatttgaaagcatgttgaggatcttcatcatgctggcacata 24687056  T
Q  644 gagagcaatctatttg 659  Q
    ||||||||||||||||    
T  24687055 gagagcaatctatttg 24687040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 264 - 622
Target Start/End: Original strand, 26792191 - 26792570
Alignment:
Q  264 agggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagacccttta-tttggttcgtttttgttgcgaa 362  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||| ||||||||||||  ||||| | ||||| ||||| ||    
T  26792191 agggtttccggattttataatccggaatgcatgaagctattctggattttaaagtacgaactgtatcagacccttttgtttggattgttttcgttgcaaa 26792290  T
Q  363 tgccttggnnnnnnntagaacaaaggtacataacataaatagaagcaaaatct-------------------aaaaccataataacagaaatgatgaatt 443  Q
    ||||||||       ||||||||||||||||||||||||| ||||||| ||                     ||||||||||||||| |||||||||||     
T  26792291 tgccttggaaaaaaatagaacaaaggtacataacataaattgaagcaacatgagacaaataaacagttaaaaaaaaccataataacataaatgatgaatc 26792390  T
Q  444 ttttgggaagttgttttcaagaggatttctttgagt-agatcctgctgccttgcgaaatgacatattcatctggcagacagcaaaatctaactcatagca 542  Q
    |||||||||| ||||||||||||||||||||||||| ||||||  || |||||| || ||||||||||||| |||||||||||| |||||||||||||||    
T  26792391 ttttgggaaggtgttttcaagaggatttctttgagttagatccatctaccttgccaagtgacatattcatcaggcagacagcaagatctaactcatagca 26792490  T
Q  543 acttcttgatatttttgagttatctatctatcaaggaggcatcaatgaatatctatatatttttgaaagcatgttgagga 622  Q
    || |||||||| ||||||||||||| | ||||||||||||||||| || ||||||||||||||||| |||||| ||||||    
T  26792491 acctcttgataattttgagttatctgtgtatcaaggaggcatcaaggagtatctatatatttttgacagcatgctgagga 26792570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 262 - 622
Target Start/End: Complemental strand, 29332223 - 29331842
Alignment:
Q  262 tgagggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagacccttta-tttggttcgtttttgttgcg 360  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||  ||||||||||||  ||||| | ||||| | |||     
T  29332223 tgagggtttccggattttataatccggaatgcatgaagctattccggattttaaagtctgaactatatcagacccttttgtttggattgttttcgatgca 29332124  T
Q  361 aatgccttggnnnnnnntagaacaaaggtacataacataaatagaagcaaaatct-------------------aaaaccataataacagaaatgatgaa 441  Q
    |||||||||        ||||||||||||||||||||||||| ||||||| ||                     ||||||||||||||||||||||||||    
T  29332123 aatgccttgaaaaaaaatagaacaaaggtacataacataaattgaagcaacataagacaaataaacggttaaaaaaaaccataataacagaaatgatgaa 29332024  T
Q  442 ttttttgggaagttgttttcaagaggatttctttgagt-agatcctgctgccttgcgaaatgacatattcatctggcagacagcaaaatctaactcatag 540  Q
    | |||||||||| ||||||||||||||||||||||||| ||||| || |||| ||| ||||||||||||||| ||| || |||||| ||||||||||||     
T  29332023 tcttttgggaaggtgttttcaagaggatttctttgagttagatcttgttgccatgccaaatgacatattcatttggtaggcagcaagatctaactcataa 29331924  T
Q  541 caacttcttgatatttttgagttatctatctatcaaggaggcatcaatgaatatctatatatttttgaaagcatgttgagga 622  Q
    |||  |||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||| |||||| ||||||    
T  29331923 caatctcttgatatttttgagttatctatgtatcaaggaggcatcaaggagtatctatatatttttgacagcatgctgagga 29331842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 416 - 622
Target Start/End: Complemental strand, 15032338 - 15032131
Alignment:
Q  416 aaaaccataataacagaaatgatgaattttttgggaagttgttttcaagaggatttctttgag-tagatcctgctgccttgcgaaatgacatattcatct 514  Q
    ||||||||||||||| |||| |||||| |||||||||| |||||||||||||||||||||||| |||||| ||||||||||| |||||||||||||||||    
T  15032338 aaaaccataataacataaataatgaatcttttgggaaggtgttttcaagaggatttctttgagctagatcttgctgccttgccaaatgacatattcatct 15032239  T
Q  515 ggcagacagcaaaatctaactcatagcaacttcttgatatttttgagttatctatctatcaaggaggcatcaatgaatatctatatatttttgaaagcat 614  Q
    |||||||||||| ||||||||||||||||| |||||||||||||||||||| | | ||||||||||||||||| || ||||||||||||||||| |||||    
T  15032238 ggcagacagcaagatctaactcatagcaacctcttgatatttttgagttatatgtgtatcaaggaggcatcaaagagtatctatatatttttgacagcat 15032139  T
Q  615 gttgagga 622  Q
    | ||||||    
T  15032138 gctgagga 15032131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 268 - 580
Target Start/End: Complemental strand, 43749127 - 43748792
Alignment:
Q  268 tttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagacccttt-atttggttcgtttttgttgcgaatgcc 366  Q
    ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||| |||||| ||||||||||||| ||||||    
T  43749127 tttccggattttataatccggaatgcatgaagctattccagattttaaagtccgaattgcatcagacccttttatttggatcgtttttgttgcaaatgcc 43749028  T
Q  367 ttggnnnnnnn---tagaacaaaggtacataacataaatagaagcaaaatct------------------aaaaccataataacagaaatgatgaatttt 445  Q
    ||||          ||||||||||||||||||||||||| ||||||| ||                    ||||||||||||||| ||||||||||| ||    
T  43749027 ttggaaaaaaaaaatagaacaaaggtacataacataaattgaagcaacataagacaaataaacagttaaaaaaaccataataacataaatgatgaatctt 43748928  T
Q  446 ttgggaagttgttttcaagaggatttctttgagt-agatcctgctgccttgcgaaatgacatattcatctggcagacagcaaaatctaactcatagcaac 544  Q
    |||||||| ||||| ||||||||||||||||||| ||||| || |||||||| ||||||||||||||| || |||||| ||  |||||||||||||||||    
T  43748927 ttgggaagatgtttccaagaggatttctttgagttagatcatgttgccttgccaaatgacatattcatttgacagacaacaggatctaactcatagcaac 43748828  T
Q  545 ttcttgatatttttgagttatctatctatcaaggag 580  Q
     |||||||||||||||||||||||| ||||||||||    
T  43748827 ctcttgatatttttgagttatctatgtatcaaggag 43748792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 416 - 622
Target Start/End: Original strand, 33849145 - 33849352
Alignment:
Q  416 aaaaccataataacagaaatgatgaattttttgggaagttgttttcaagaggatttctttgagt-agatcctgctgccttgcgaaatgacatattcatct 514  Q
    |||| |||||||||||||||||||||| |||||||||  ||||||||||||||||||||||||| | ||| ||||||||||| | |||||||||||||||    
T  33849145 aaaatcataataacagaaatgatgaatcttttgggaatgtgttttcaagaggatttctttgagttaaatcatgctgccttgccacatgacatattcatct 33849244  T
Q  515 ggcagacagcaaaatctaactcatagcaacttcttgatatttttgagttatctatctatcaaggaggcatcaatgaatatctatatatttttgaaagcat 614  Q
    ||||| |||||  ||||||||||||||||| |||||||||||||||||||||||| |||||| |||||||||| || ||||||||||||||||| |||||    
T  33849245 ggcaggcagcacgatctaactcatagcaacctcttgatatttttgagttatctatgtatcaaagaggcatcaaggagtatctatatatttttgatagcat 33849344  T
Q  615 gttgagga 622  Q
    ||||||||    
T  33849345 gttgagga 33849352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 262 - 622
Target Start/End: Original strand, 45490413 - 45490795
Alignment:
Q  262 tgagggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagaccc-tttatttggttcgtttttgttgcg 360  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||| ||||| || |||| |||||     
T  45490413 tgagggtttccggatgttataatccggaatgcatgaagctattccggattttaaagtccaaactgcatcagacccttttgtttggatcattttcgttgca 45490512  T
Q  361 aatgccttggnnnnnnntagaacaaaggtacataacataaatagaagcaaaat-------ctaaa-------------accataataacagaaatgatga 440  Q
    |||| |||||       |||||||||||| |||||||||||||||| ||| ||        ||||             |||||||||||| ||||| |||    
T  45490513 aatgtcttggaaaaaaatagaacaaaggtgcataacataaatagaatcaacataagacaaataaacagttgaaaaaaaaccataataacataaatgttga 45490612  T
Q  441 attttttgggaagttgttttcaagaggatttctttgag-tagatcctgctgccttgcgaaatgacatattcatctggcagacagcaaaatctaactcata 539  Q
    || ||| |||||| || ||||||||||||||||||||| | |||||||||  ||||| |||||||||||||||||||||| ||| |  ||| ||||||||    
T  45490613 atctttcgggaagatgatttcaagaggatttctttgagttcgatcctgctatcttgccaaatgacatattcatctggcaggcagaaggatcgaactcata 45490712  T
Q  540 gcaacttcttgatatttttgagttatctatctatcaaggaggcatcaatgaatatctatatatttttgaaagcatgttgagga 622  Q
    | ||| ||||||||||||||| |||||||| ||||||||||||||||| || ||||||||||||||||| |||||| ||||||    
T  45490713 gaaacctcttgatatttttgacttatctatgtatcaaggaggcatcaaggagtatctatatatttttgacagcatgctgagga 45490795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 262 - 580
Target Start/End: Original strand, 108896 - 109234
Alignment:
Q  262 tgagggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagacccttta-tttggttcgtttttgttgcg 360  Q
    ||||||||||| |||||||||||| |||||||||||||||||| | |||| |||||||| |||||||||| |||||||  ||||| ||||||| |||||     
T  108896 tgagggtttccagattttataatctggaatgcatgaagctatttcagattttaaagtcccaactgcatcaaacccttttgtttggatcgttttcgttgca 108995  T
Q  361 aatgccttggnnnnnnntagaacaaaggtacataacataaatagaagcaaaatct------------------aaaaccataataacagaaatgatgaat 442  Q
    ||| ||||||       ||||||||||||||||||||||||| ||||||| ||                    ||||||| |||||||||||||||||||    
T  108996 aattccttggaaaaaaatagaacaaaggtacataacataaatggaagcaacataagacaaataaacagttaaaaaaaccacaataacagaaatgatgaat 109095  T
Q  443 tttttgggaagttgttttcaagaggatttctttgagt-agatcctgctgccttgcgaaatgacatattcatctggcagacagcaaaatctaactcatagc 541  Q
     |||||||||| |||||||||||| |||||||| ||| ||||| ||||  ||||| ||||||||||||||||| |||| |||||| |||||||||||| |    
T  109096 cttttgggaagatgttttcaagagaatttctttaagttagatcatgctatcttgccaaatgacatattcatctagcaggcagcaagatctaactcataac 109195  T
Q  542 aacttcttgatatttttgagttatctatctatcaaggag 580  Q
    ||| |||||||||||||||||||| ||| ||||||||||    
T  109196 aacctcttgatatttttgagttatatatgtatcaaggag 109234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 416 - 622
Target Start/End: Original strand, 37999037 - 37999245
Alignment:
Q  416 aaaaccataataacagaaatgatgaattttttgggaagttgttttcaagaggatttctttgag-tagatcctgctgccttgcgaaatgacatattcatct 514  Q
    ||||||||||||||||||||| ||||| |||||||||| ||||||||||||||||| |||||| | |||||||||||||||| |||||||||||||||||    
T  37999037 aaaaccataataacagaaatgttgaatcttttgggaaggtgttttcaagaggatttatttgagttcgatcctgctgccttgccaaatgacatattcatct 37999136  T
Q  515 ggcagacagcaaaatctaactcatagcaa-cttcttgatatttttgagttatctatctatcaaggaggcatcaatgaatatctatatatttttgaaagca 613  Q
    ||||| ||| |  ||| ||||||||| || | ||||||||||||||||||| |||| ||| ||||||||||||| || ||||||||||||||||| | ||    
T  37999137 ggcaggcagaaggatcgaactcatagaaatcctcttgatatttttgagttaactatgtatgaaggaggcatcaaagagtatctatatatttttgacaaca 37999236  T
Q  614 tgttgagga 622  Q
    || ||||||    
T  37999237 tgctgagga 37999245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 264 - 370
Target Start/End: Complemental strand, 29739138 - 29739031
Alignment:
Q  264 agggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagacc-ctttatttggttcgtttttgttgcgaa 362  Q
    |||||||| |||||||||||||| |||||||||||| |||| |||||| |||||||| ||||||||||||||  ||| ||||| ||||||| ||||| ||    
T  29739138 agggtttctggattttataatccagaatgcatgaagatatttcggattttaaagtccaaactgcatcagacctttttgtttggatcgttttcgttgcaaa 29739039  T
Q  363 tgccttgg 370  Q
    ||||||||    
T  29739038 tgccttgg 29739031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 264 - 406
Target Start/End: Original strand, 37998865 - 37999007
Alignment:
Q  264 agggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagaccc-tttatttggttcgtttttgttgcgaa 362  Q
    |||||||| ||||||||||||||||||||||||||| |  ||| ||||||||||   |||| ||||||||||| ||| ||||  ||||||| ||||||||    
T  37998865 agggtttctggattttataatccggaatgcatgaaggtggtccagattataaagatggaaccgcatcagacccttttttttgaatcgttttcgttgcgaa 37998964  T
Q  363 tgccttggnnnnnnntagaacaaaggtacataacataaatagaa 406  Q
    ||||||         |||||||||||||||||||||||||||||    
T  37998965 tgcctt-aaaaaaaatagaacaaaggtacataacataaatagaa 37999007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 179; Significance: 3e-96; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 262 - 622
Target Start/End: Complemental strand, 5464322 - 5463941
Alignment:
Q  262 tgagggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagaccc-tttatttggttcgtttttgttgcg 360  Q
    |||||||||||||||||||||||| ||||||||||||||||||||  ||| |||||||||||||||||||||||| ||| ||||| ||||||| |||||     
T  5464322 tgagggtttccggattttataatctggaatgcatgaagctattccaaattttaaagtccgaactgcatcagacccttttgtttggatcgttttcgttgca 5464223  T
Q  361 aatgccttggnnnnnnntagaacaaaggtacataacataaatagaagcaaaat-------ctaaa-------------accataataacagaaatgatga 440  Q
    ||||||||||       ||||||||||||||| |||||| || ||||||| ||        ||||             ||||||||||||||||||||||    
T  5464222 aatgccttgg-aaaaaatagaacaaaggtacacaacatagattgaagcaacataagacaaataaacagttaaaaaaaaaccataataacagaaatgatga 5464124  T
Q  441 attttttgggaagttgttttcaagaggatttctttgag-tagatcctgctgccttgcgaaatgacatattcatctggcagacagcaaaatctaactcata 539  Q
    || |||||||||| |||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |||||| ||||||||||||    
T  5464123 atcttttgggaaggtgttttcaagaggatttctttgagttagatcctgctgccttgccaaatgacatattcatctggcaggcagcaagatctaactcata 5464024  T
Q  540 gcaacttcttgatatttttgagttatctatctatcaaggaggcatcaatgaatatctatatatttttgaaagcatgttgagga 622  Q
    ||||| |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| ||||||    
T  5464023 gcaacctcttaatatttttgagttatctatctatcaaggaggcatcaatgagtatctatatatttttgacagcatgctgagga 5463941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 272 - 615
Target Start/End: Complemental strand, 15113274 - 15112910
Alignment:
Q  272 cggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagaccctttattt--ggttcgtttttgttgcgaatgccttg 369  Q
    ||||||||||||||  |||||| ||||||||||||||||| ||||||| ||||||||||| ||||||| |||  || ||||||| |||||||||||||||    
T  15113274 cggattttataatctagaatgcttgaagctattccggattgtaaagtctgaactgcatcataccctttttttttggatcgttttcgttgcgaatgccttg 15113175  T
Q  370 gnnnnnnntagaacaaaggtacataacataaatagaagcaaaatct------------------aaaaccataataacagaaatgatgaattttttggga 451  Q
    |       ||||||||||||||||||||||||||||||||| ||                    ||| | ||||||||| ||||||||||| ||||| ||    
T  15113174 gaaaaaaatagaacaaaggtacataacataaatagaagcaacataagacaaataaacagtgaaaaaagcaataataacaaaaatgatgaatcttttgaga 15113075  T
Q  452 agttgttttcaagaggatttctttgagt-agatcctgctgccttgcgaaatgacatattcatctggcagacagcaaaatctaactcatagcaacttcttg 550  Q
    |||||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||| |||||| |||||||||||| |||| |||||    
T  15113074 agttgttttcaagaggatttctttgagttagatcctgctgccttaccaaatgacatattcatctggcaggcagcaagatctaactcataacaacctcttg 15112975  T
Q  551 atatttttgagttatctatctatcaaggaggcatcaatgaatatctatatatttttgaaagcatg 615  Q
    |||||||||| |||||||| ||||||||||||||||| || ||||||||||||||||||||||||    
T  15112974 atatttttgacttatctatgtatcaaggaggcatcaaagagtatctatatatttttgaaagcatg 15112910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 261 - 406
Target Start/End: Original strand, 41961908 - 41962053
Alignment:
Q  261 atgagggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagaccctttatttggttcgtttttgttgcg 360  Q
    ||||||||||||||||| || |||||||||||||||||| |  |||||||| ||||||||||||  ||||||||||||| ||||| ||||||| ||||||    
T  41961908 atgagggtttccggattataaaatccggaatgcatgaaggtggtccggattgtaaagtccgaaccacatcagaccctttttttggatcgttttcgttgcg 41962007  T
Q  361 aatgccttggnnnnnnntagaacaaaggtacataacataaatagaa 406  Q
    ||||||||||       |||||||||||||||||||||||||||||    
T  41962008 aatgccttggaaaaaaatagaacaaaggtacataacataaatagaa 41962053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 458 - 659
Target Start/End: Original strand, 24168860 - 24169050
Alignment:
Q  458 tttcaagaggatttctttgagt-agatcctgctgccttgcgaaatgacatattcatctggcagacagcaaaatctaactcatagcaacttcttgatattt 556  Q
    ||||||||| |||||||||||| ||||||| ||||||||| || ||||||||| ||||||||| |||||| |||||||||||| |||| |||||||||||    
T  24168860 tttcaagagaatttctttgagttagatcctactgccttgccaa-tgacatatttatctggcaggcagcaagatctaactcataacaacctcttgatattt 24168958  T
Q  557 ttgagttatctatctatcaaggaggcatcaatgaatatctatatatttttgaaagcatgttgaggaggttaaccatgttggcacatagagagcaatctat 656  Q
    ||||||||||||||||  ||||||           || ||||||||||||||||||||| ||||||  || |||| | ||||||||||||||||||| ||    
T  24168959 ttgagttatctatctaataaggag-----------taactatatatttttgaaagcatgctgaggatcttcaccaggctggcacatagagagcaatcgat 24169047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 262 - 339
Target Start/End: Original strand, 43334010 - 43334087
Alignment:
Q  262 tgagggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagacccttt 339  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||    
T  43334010 tgagggtttccagattttataatccggaatgcatgaagctattccagattttaaagtccgaactgcatcagacccttt 43334087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 458 - 555
Target Start/End: Complemental strand, 5938097 - 5937999
Alignment:
Q  458 tttcaagaggatttctttgag-tagatcctgctgccttgcgaaatgacatattcatctggcagacagcaaaatctaactcatagcaacttcttgatatt 555  Q
    |||||||||||||||| |||| |||||||||||||||||| ||||||||||||||| ||||||  ||||| ||||||||||||| ||| ||||||||||    
T  5938097 tttcaagaggatttctctgagctagatcctgctgccttgccaaatgacatattcatgtggcagggagcaagatctaactcatagaaacctcttgatatt 5937999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 532 - 614
Target Start/End: Original strand, 41962151 - 41962233
Alignment:
Q  532 aactcatagcaacttcttgatatttttgagttatctatctatcaaggaggcatcaatgaatatctatatatttttgaaagcat 614  Q
    ||||||||| ||  |||||||||||||||||||||||| |||||||||||||||||  | ||||||||||||||||| |||||    
T  41962151 aactcatagaaagctcttgatatttttgagttatctatgtatcaaggaggcatcaagcagtatctatatatttttgacagcat 41962233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 458 - 552
Target Start/End: Original strand, 18963886 - 18963981
Alignment:
Q  458 tttcaagaggatttctttgagt-agatcctgctgccttgcgaaatgacatattcatctggcagacagcaaaatctaactcatagcaacttcttgat 552  Q
    |||||||||||||||||||||| ||||||||||  ||||| ||||||| ||||||||||||||  || || ||||||||||||| ||| |||||||    
T  18963886 tttcaagaggatttctttgagttagatcctgctctcttgccaaatgacttattcatctggcaggaagtaagatctaactcatagaaacctcttgat 18963981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 269 - 410
Target Start/End: Complemental strand, 16739342 - 16739197
Alignment:
Q  269 ttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatca-gaccctttatttggttcgtttttgttgcgaatgcct 367  Q
    |||||||||||||||||||||  ||||| || | ||||||||| ||||||||||||||||||| | || |||||||||  ||||||  | ||||||| ||    
T  16739342 ttccggattttataatccggatagcatgtagttgttccggattttaaagtccgaactgcatcaggtccttttatttggagcgttttcttggcgaatggct 16739243  T
Q  368 tgg---nnnnnnntagaacaaaggtacataacataaatagaagcaa 410  Q
    |||          |||||||||||||||||||||||||||||||||    
T  16739242 tggaaaaaaaaaatagaacaaaggtacataacataaatagaagcaa 16739197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 262 - 403
Target Start/End: Original strand, 18963537 - 18963678
Alignment:
Q  262 tgagggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagaccctttatttggttcgtttttgttgcga 361  Q
    |||||| |||| ||||||||| |||||||||||||||| |  || |||||||||| |||||||||||||| ||||| |||||||  | |||| || || |    
T  18963537 tgaggggttccagattttatattccggaatgcatgaagtttgtctggattataaaatccgaactgcatcacaccctgtatttggagccttttcgtggcaa 18963636  T
Q  362 atgccttggnnnnnnntagaacaaaggtacataacataaata 403  Q
    ||| |||||       || ||||||||| |||||||||||||    
T  18963637 atggcttggaaaaatataaaacaaaggtgcataacataaata 18963678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 269 - 339
Target Start/End: Original strand, 34906536 - 34906606
Alignment:
Q  269 ttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagacccttt 339  Q
    |||||||||||||||||||||  |||||||| | ||||||||| ||||||| |||||||||||| ||||||    
T  34906536 ttccggattttataatccggatagcatgaagttgttccggattgtaaagtctgaactgcatcaggcccttt 34906606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 458 - 555
Target Start/End: Original strand, 34948889 - 34948988
Alignment:
Q  458 tttcaagaggatttctttgag-tag-atcctgctgccttgcgaaatgacatattcatctggcagacagcaaaatctaactcatagcaacttcttgatatt 555  Q
    |||||||||||||| | |||| ||| ||||||||||||||| ||||||||||||||||||| |  |||||| ||||| ||||||| ||| || |||||||    
T  34948889 tttcaagaggatttttctgagctagcatcctgctgccttgccaaatgacatattcatctggaacgcagcaagatctagctcatagaaacctcatgatatt 34948988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 462 - 555
Target Start/End: Complemental strand, 16739104 - 16739010
Alignment:
Q  462 aagaggatttctttgag-tagatcctgctgccttgcgaaatgacatattcatctggcagacagcaaaatctaactcatagcaacttcttgatatt 555  Q
    |||||||||||| |||| || ||| || || ||||| | |||| ||||||||||||||| |||||||||||| ||||||| ||| ||||||||||    
T  16739104 aagaggatttctctgagctacatcgtgttgtcttgccatatgaaatattcatctggcaggcagcaaaatctagctcatagaaacctcttgatatt 16739010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 272 - 408
Target Start/End: Complemental strand, 5938335 - 5938198
Alignment:
Q  272 cggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagac-cctttatttggttcgtttttgttgcgaatgccttgg 370  Q
    ||||||||||||||||||  |||||||| | ||||| ||| ||||||||||| |||||||| | | |||||||||  ||||||  | ||||||| |||||    
T  5938335 cggattttataatccggatagcatgaagtttttccgaattttaaagtccgaattgcatcaggcacttttatttggagcgttttcttggcgaatggcttgg 5938236  T
Q  371 nnnnnnntagaacaaaggtacataacataaatagaagc 408  Q
           || |||||||| |||||||||||| ||||||    
T  5938235 aaaaaaataaaacaaaggaacataacataaaaagaagc 5938198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 275 - 410
Target Start/End: Original strand, 34948664 - 34948800
Alignment:
Q  275 attttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagac-cctttatttggttcgtttttgttgcgaatgccttggnnn 373  Q
    |||||||||||||||  |||||||| | ||||||||| |||||||| || |||||||| | | |||||||||  ||||||  | ||||||| |||||       
T  34948664 attttataatccggatagcatgaagtttttccggattttaaagtccaaattgcatcaggcacttttatttggagcgttttcttggcgaatggcttgggaa 34948763  T
Q  374 nnnntagaacaaaggtacataacataaatagaagcaa 410  Q
        ||||||||||| ||| |||||||| ||||||||    
T  34948764 aaaatagaacaaaggaacagaacataaaaagaagcaa 34948800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 416 - 458
Target Start/End: Original strand, 18963709 - 18963751
Alignment:
Q  416 aaaaccataataacagaaatgatgaattttttgggaagttgtt 458  Q
    ||||||||||||||||||||||||||| |||||||||| ||||    
T  18963709 aaaaccataataacagaaatgatgaatcttttgggaaggtgtt 18963751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 343
Target Start/End: Original strand, 45526507 - 45526588
Alignment:
Q  262 tgagggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagaccctttattt 343  Q
    ||||||||||||||||| ||| ||||||   ||||||| |  |||||||| |||| |||||| |||||||| | ||||||||    
T  45526507 tgagggtttccggatttcatactccggacaacatgaaggtggtccggattgtaaaatccgaattgcatcaggctctttattt 45526588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 593 - 658
Target Start/End: Original strand, 45526691 - 45526756
Alignment:
Q  593 atctatatatttttgaaagcatgttgaggaggttaaccatgttggcacatagagagcaatctattt 658  Q
    |||| |||||||||||||||||| ||||||  || |||||| ||| |  |||||||||||||||||    
T  45526691 atctttatatttttgaaagcatgctgaggatcttcaccatgctggtagttagagagcaatctattt 45526756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 167; Significance: 4e-89; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 262 - 622
Target Start/End: Original strand, 24830950 - 24831331
Alignment:
Q  262 tgagggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagacccttta-tttggttcgtttttgttgcg 360  Q
    |||||||||| ||||||||||||  ||||||||||||||||||||||||| |||| |||||||||| |||||||||||  ||||| |||||||||||||     
T  24830950 tgagggtttctggattttataatttggaatgcatgaagctattccggattttaaaatccgaactgcgtcagacccttttgtttggatcgtttttgttgca 24831049  T
Q  361 aatgccttggnnnnnnntagaacaaaggtacataacataaatagaagcaaaatct-------------------aaaaccataataacagaaatgatgaa 441  Q
    | ||||||||       || |||||||||||||||||||||| ||||||| ||                     ||||||||||||||||||||||||||    
T  24831050 attgccttggaaaaaaataaaacaaaggtacataacataaattgaagcaacataagacaaataaacagttaaaaaaaaccataataacagaaatgatgaa 24831149  T
Q  442 ttttttgggaagttgttttcaagaggatttctttgagt-agatcctgctgccttgcgaaatgacatattcatctggcagacagcaaaatctaactcatag 540  Q
    | |||||||||| ||||||||||||||||||||||||| ||||| | ||||||||| |||||||||||||||||||||| |||||| |||||||||||||    
T  24831150 tcttttgggaaggtgttttcaagaggatttctttgagttagatcttactgccttgccaaatgacatattcatctggcaggcagcaagatctaactcatag 24831249  T
Q  541 caacttcttgatatttttgagttatctatctatcaaggaggcatcaatgaatatctatatatttttgaaagcatgttgagga 622  Q
    |||| |||||||||||||||||||||||| |||||||||||||||||  | ||||||||||||||||| |||||| ||||||    
T  24831250 caacctcttgatatttttgagttatctatgtatcaaggaggcatcaagcagtatctatatatttttgacagcatgatgagga 24831331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 262 - 622
Target Start/End: Complemental strand, 11666 - 11285
Alignment:
Q  262 tgagggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagacccttta-tttggttcgtttttgttgcg 360  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  ||||| || |||| |||||     
T  11666 tgagagtttccggattttataatccggaatgcatgaagctattccggattttaaagtccgaactgcatcagacccttttgtttggatcattttcgttgca 11567  T
Q  361 aatgccttggnnnnnnntagaacaaaggtacataacataaatagaagcaaaatct-------------------aaaaccataataacagaaatgatgaa 441  Q
    |||| |||||       ||||||||||||||||||||||||| ||||||| ||                     ||||| ||||||||| ||||||||||    
T  11566 aatgtcttggaaaaaaatagaacaaaggtacataacataaattgaagcaacatgagacaaataaacagttaaaaaaaacaataataacataaatgatgaa 11467  T
Q  442 ttttttgggaagttgttttcaagaggatttctttgagt-agatcctgctgccttgcgaaatgacatattcatctggcagacagcaaaatctaactcatag 540  Q
    | |||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||||||||| ||||| ||| |||||||||||||    
T  11466 tcttttgggaagatgttttcaagaggatttctttgagttagatcctgctgccttgccaaataacatattcatctggaagacaacaagatctaactcatag 11367  T
Q  541 caacttcttgatatttttgagttatctatctatcaaggaggcatcaatgaatatctatatatttttgaaagcatgttgagga 622  Q
    |||| ||||| |||||||||||||||| | ||||||||||||||||| || ||||||||||| ||||| |||||| ||||||    
T  11366 caacctcttggtatttttgagttatctgtgtatcaaggaggcatcaaggagtatctatatatgtttgacagcatgctgagga 11285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 263 - 559
Target Start/End: Original strand, 41834896 - 41835212
Alignment:
Q  263 gagggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagaccctttatttggttcgtttttgttgcgaa 362  Q
    ||||||||||||||||||||||||| || |||||||| || |||||||| ||||||||||||||||||||||| ||||||||| |||||||||||| |||    
T  41834896 gagggtttccggattttataatccgaaaagcatgaagttagtccggattttaaagtccgaactgcatcagaccttttatttggatcgtttttgttgagaa 41834995  T
Q  363 tgccttggnnnnnnntagaacaaaggtacataacataaatagaagcaaaat-------------------ctaaaaccataataacagaaatgatgaatt 443  Q
    ||||||||       ||||||||| |||||||||||||| |||||||| ||                     |||| |||||||||| |||||||||||     
T  41834996 tgccttggaaaaaaatagaacaaaagtacataacataaaaagaagcaacataaaataaataaacaattaaaaaaaatcataataacataaatgatgaatc 41835095  T
Q  444 ttttgggaagttgttttcaagaggatttctttgag-tagatcctgctgccttgcgaaatgacatattcatctggcagacagcaaaatctaactcatagca 542  Q
    |||||||||  | |||||||||||||||||||||| |||||| || || ||| | ||| ||||||||||||||| ||  ||||| |||||||||||||||    
T  41835096 ttttgggaatgtattttcaagaggatttctttgagttagatcatgttgtcttacaaaacgacatattcatctggaaggtagcaagatctaactcatagca 41835195  T
Q  543 acttcttgatatttttg 559  Q
    || ||||||||||||||    
T  41835196 acctcttgatatttttg 41835212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 266 - 406
Target Start/End: Original strand, 42190746 - 42190885
Alignment:
Q  266 ggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagaccctttatttggttcgtttttgttgcgaatgc 365  Q
    |||||| ||| |||||||||| |||||||||||| |  ||||||||||||||||  ||| |||| ||||| ||| ||| | ||||||| |||||||||||    
T  42190746 ggtttctggagtttataatccagaatgcatgaaggtggtccggattataaagtctaaaccgcataagaccttttttttagatcgttttcgttgcgaatgc 42190845  T
Q  366 cttggnnnnnnntagaacaaaggtacataacataaatagaa 406  Q
    |||||       |||||||||||||||||||||||||||||    
T  42190846 cttgg-aaaaaatagaacaaaggtacataacataaatagaa 42190885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 163; Significance: 1e-86; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 262 - 620
Target Start/End: Complemental strand, 52919394 - 52919013
Alignment:
Q  262 tgagggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaact-gcatcagacccttta-tttggttcgtttttgttgc 359  Q
    ||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||| |||| ||||||||||||||  ||||| ||||||| |||||    
T  52919394 tgagggtttccagattttataatccggaatgcatgaagttattccggattttaaagtccaaactagcatcagacccttttgtttggatcgttttcgttgc 52919295  T
Q  360 gaatgccttggnnnnnnn-tagaacaaaggtacataacataaatagaagcaaaatct-------------------aaaaccataataacagaaatgatg 439  Q
     ||||||||||        ||||||||| ||||||||||||||| ||||||| ||                     ||||||||||||||| ||||||||    
T  52919294 aaatgccttggaaaaaaaatagaacaaaagtacataacataaattgaagcaacataagacaaataaacagttaaaaaaaaccataataacaaaaatgatg 52919195  T
Q  440 aattttttgggaagttgttttcaagaggatttctttgagt-agatcctgctgccttgcgaaatgacatattcatctggcagacagcaaaatctaactcat 538  Q
    ||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||  |||||||||||    
T  52919194 aatcttttgggaaggtgttttcaagaggatttctttgagttagatcctgctgccttgccaaatgacatattcatctggcaggcagcacgatctaactcat 52919095  T
Q  539 agcaacttcttgatatttttgagttatctatctatcaaggaggcatcaatgaatatctatatatttttgaaagcatgttgag 620  Q
    |||||| |||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||| |||||| ||||    
T  52919094 agcaacctcttgatatttttgagttatctatgtatcaaggaggcatcaaggactatctatatatttttgacagcatgctgag 52919013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 262 - 647
Target Start/End: Complemental strand, 47985623 - 47985217
Alignment:
Q  262 tgagggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagacccttta-tttggttcgtttttgttgcg 360  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  ||||| || ||||  ||||     
T  47985623 tgagggttttcggattttataatccggaatgcatgaagctattccggattttaaagtccgaactgcatcagacccttttgtttggatcattttc-ttgca 47985525  T
Q  361 aatgccttggnnnnnnntagaacaaaggtacataacataaatagaagcaaaat-------ctaaa-------------accataataacagaaatgatga 440  Q
    ||||||||||       ||||||||| ||||||||||||||||||| ||| ||        ||||             |||||||||||||||||| |||    
T  47985524 aatgccttggaaaaaaatagaacaaatgtacataacataaatagaatcaacataagacaaataaacagttgaaaaaaaaccataataacagaaatgttga 47985425  T
Q  441 attttttgggaagttgttttcaagaggatttctttgag-tagatcctgctgccttgcgaaatgacatattcatctggcagacagcaaaatctaactcata 539  Q
    || ||| |||||| |||||||||||||||||||||||| | |||| ||||||||||| ||||||||||||||| |||||||||| |  ||| ||||||||    
T  47985424 atctttcgggaaggtgttttcaagaggatttctttgagttcgatcttgctgccttgccaaatgacatattcatatggcagacagaaggatcgaactcata 47985325  T
Q  540 gcaacttcttgatatttttgagttatctatctatcaaggaggcatcaatgaatatctatatatttttgaaagcatgttgaggaggttaaccatgttggca 639  Q
    | ||| |||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||| |||||||||||||  || | |||||||  |    
T  47985324 gaaacctcttgatatttttgagttatctatgtatcaaggaggcatcaaagagtatctatatatttttgacagcatgttgaggattttcatcatgttgtta 47985225  T
Q  640 catagaga 647  Q
    ||||||||    
T  47985224 catagaga 47985217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 143; E-Value: 9e-75
Query Start/End: Original strand, 262 - 622
Target Start/End: Complemental strand, 55612324 - 55611944
Alignment:
Q  262 tgagggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagacccttta-tttggttcgtttttgttgcg 360  Q
    ||||| |||| | ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||  ||||| || |||| |||||     
T  55612324 tgaggatttctgaattttataatccggaatgcatgaagctattccggattttaaagtccgaactacatcagacccttttgtttggatcattttcgttgca 55612225  T
Q  361 aatgccttggnnnnnnntagaacaaaggtacataacataaatagaagcaaaatct-------------------aaaaccataataacagaaatgatgaa 441  Q
    |||||||||        ||||||||||||||||||||||||| ||||||| ||                     |||| |||||||||| ||||||||||    
T  55612224 aatgccttgaaaaaaaatagaacaaaggtacataacataaattgaagcaacatgagacaaataaacaattaaaaaaaatcataataacataaatgatgaa 55612125  T
Q  442 ttttttgggaagttgttttcaagaggatttctttgagt-agatcctgctgccttgcgaaatgacatattcatctggcagacagcaaaatctaactcatag 540  Q
    | |||||||||| ||||||||||||||||||||||| | ||||||||||||||||  ||||||||||||||||| |||| |||||| |||||||||||||    
T  55612124 tcttttgggaagatgttttcaagaggatttctttgacttagatcctgctgccttgtcaaatgacatattcatcttgcaggcagcaagatctaactcatag 55612025  T
Q  541 caacttcttgatatttttgagttatctatctatcaaggaggcatcaatgaatatctatatatttttgaaagcatgttgagga 622  Q
    |||| ||||||||||||||||||||   |||||||||||| |||||| || ||||||||||||||||| |||||| ||||||    
T  55612024 caacctcttgatatttttgagttat-agtctatcaaggagacatcaaggagtatctatatatttttgacagcatgctgagga 55611944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 138; E-Value: 9e-72
Query Start/End: Original strand, 262 - 622
Target Start/End: Original strand, 44108280 - 44108659
Alignment:
Q  262 tgagggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagaccctttatttggttcgtttttgttgcga 361  Q
    |||||||||||||||||||||||||||||||||||||| |  |||||||||||||||| |||| |||||| ||||||| ||||| ||||||| |||||||    
T  44108280 tgagggtttccggattttataatccggaatgcatgaaggtggtccggattataaagtctgaaccgcatcaaacccttt-tttggatcgttttcgttgcga 44108378  T
Q  362 atgccttggnnnnnnntagaacaaaggtacataacataaatagaagcaaaatct-------------------aaaaccataataacagaaatgatgaat 442  Q
    |||||||||        |||||||||||||||||||||||||||| ||| ||                     ||||||||||||||| ||||| |||||    
T  44108379 atgccttggaaaaaaacagaacaaaggtacataacataaatagaatcaacataagacaaataaacagttgaaaaaaaccataataacataaatgttgaat 44108478  T
Q  443 tttttgggaagttgttttcaagaggatttctttgagta-gatcctgctgccttgcgaaatgacatattcatctggcagacagcaaaatctaactcatagc 541  Q
     ||| |  ||| |||||||||| ||||||||||||||  |||| ||||||||||| |||||||||||||||||||||||||| |  ||| |||||||||     
T  44108479 ctttcgtaaaggtgttttcaaggggatttctttgagttcgatcatgctgccttgccaaatgacatattcatctggcagacagaaggatcgaactcataga 44108578  T
Q  542 aacttcttgatatttttgagttatctatctatcaaggaggcatcaatgaatatctatatatttttgaaagcatgttgagga 622  Q
    ||| |||||||||||| ||||||||||| ||||||||||||||||| || ||||| ||||||||||| |||||||||||||    
T  44108579 aacctcttgatattttagagttatctatgtatcaaggaggcatcaaggagtatctgtatatttttgatagcatgttgagga 44108659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 416 - 622
Target Start/End: Complemental strand, 38990429 - 38990222
Alignment:
Q  416 aaaaccataataacagaaatgatgaattttttgggaagttgttttcaagaggatttctttgagt-agatcctgctgccttgcgaaatgacatattcatct 514  Q
    ||||||||||||||| ||||||||||| |||||  ||| ||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||    
T  38990429 aaaaccataataacataaatgatgaatcttttgaaaaggtgttttcaagaggatttctttgagttagatcctactgccttgccaaatgacatattcatct 38990330  T
Q  515 ggcagacagcaaaatctaactcatagcaacttcttgatatttttgagttatctatctatcaaggaggcatcaatgaatatctatatatttttgaaagcat 614  Q
    ||||| |||||| ||| |||||||| |||| |||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||| |||||    
T  38990329 ggcaggcagcaagatcaaactcataacaacctcttgatatttttgagttatctatgtatcaaggaggcatcaaggagtatctatatatttttgacagcat 38990230  T
Q  615 gttgagga 622  Q
    | ||||||    
T  38990229 gctgagga 38990222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 416 - 622
Target Start/End: Original strand, 47604138 - 47604344
Alignment:
Q  416 aaaaccataataacagaaatgatgaattttttgggaagttgttttcaagaggatttctttgagt-agatcctgctgccttgcgaaatgacatattcatct 514  Q
    |||| |||||||||| ||||||||||| |||| ||||| | ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||    
T  47604138 aaaatcataataacataaatgatgaatcttttaggaaggtattttcaagaggatttctttgagttagatcctgctgccttgccaaatgacatattcatct 47604237  T
Q  515 ggcagacagcaaaatctaactcatagcaacttcttgatatttttgagttatctatctatcaaggaggcatcaatgaatatctatatatttttgaaagcat 614  Q
    |||||||||||| |||||||||||| |||| |||||||||||||||||||||| | ||||||||||||||||| || |||||| |||||||||| |||||    
T  47604238 ggcagacagcaagatctaactcatatcaacctcttgatatttttgagttatctctgtatcaaggaggcatcaaggagtatcta-atatttttgacagcat 47604336  T
Q  615 gttgagga 622  Q
    ||||||||    
T  47604337 gttgagga 47604344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 267 - 615
Target Start/End: Complemental strand, 45659458 - 45659091
Alignment:
Q  267 gtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagaccctttatttggttcgtttttgttgcgaatgcc 366  Q
    |||||||||||||||||| |||||||| ||||||||||||||||| ||||||| ||||| ||||||||| ||| |||  | |||||| ||||| |||| |    
T  45659458 gtttccggattttataattcggaatgcttgaagctattccggattgtaaagtctgaactacatcagaccattttttttat-cgttttcgttgcaaatgtc 45659360  T
Q  367 ttggnnnnnnn-tagaacaaaggtacataacataaatagaagcaaaatct------------------aaaaccataataacagaaatgatgaatttttt 447  Q
    | ||        ||||||||||||||||||||||||||||||||| ||                    ||||| |||| |||| ||||||||||| ||||    
T  45659359 tcggaaaaaaaatagaacaaaggtacataacataaatagaagcaacataagacaaataaatagttaaaaaaacgataacaacataaatgatgaatatttt 45659260  T
Q  448 gggaagttgttttcaagaggatttctttgagtag-atcctgctgccttgcgaaatgacatattcatctggcagacagcaaaatctaactcatagcaactt 546  Q
    |||||||||||||||||||||||||||| ||| | ||||||||| ||||| |||||||||||||||||||||| |||||| ||||||||||||||||| |    
T  45659259 gggaagttgttttcaagaggatttctttaagttggatcctgctgtcttgccaaatgacatattcatctggcaggcagcaagatctaactcatagcaacct 45659160  T
Q  547 cttgatatttttgagttatctatctatcaaggaggcatcaatgaatatctatatatttttgaaagcatg 615  Q
    |||||||||||| | |||| ||| ||||||| ||||||||| || ||||||||||||||||| ||||||    
T  45659159 cttgatattttttacttatatatgtatcaagaaggcatcaaggagtatctatatatttttgacagcatg 45659091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 444 - 622
Target Start/End: Original strand, 53269777 - 53269956
Alignment:
Q  444 ttttgggaagttgttttcaagaggatttctttgagt-agatcctgctgccttgcgaaatgacatattcatctggcagacagcaaaatctaactcatagca 542  Q
    |||||||||  ||||||||| ||||||||||||||| ||||| ||||||||||| |||| |||||||||||||||||||||||  |||||||||||||||    
T  53269777 ttttgggaaagtgttttcaaaaggatttctttgagttagatcatgctgccttgccaaataacatattcatctggcagacagcacgatctaactcatagca 53269876  T
Q  543 acttcttgatatttttgagttatctatctatcaaggaggcatcaatgaatatctatatatttttgaaagcatgttgagga 622  Q
    || |||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||| |||||||||||||    
T  53269877 acctcttgatatttttgagttatctatgtatcaaggaggcatcaaggagtatctatatatttttgacagcatgttgagga 53269956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 265 - 533
Target Start/End: Original strand, 13721548 - 13721838
Alignment:
Q  265 gggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagacccttt-atttggttcgtttttgttgcgaat 363  Q
    ||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||  ||||||||||||||||||| |||    
T  13721548 gggtttccggattttataatccggaatgcatcaagctattctggattttaaagtccgaactgcatcagaccctttcgtttggttcgtttttgttgcaaat 13721647  T
Q  364 gccttggnnnnnnntagaacaaaggtacataacataaatagaagcaaaat-------ctaaa-------------accataataacagaaatgatgaatt 443  Q
    |||||||       ||||||||||||||||||||||||| ||||||| ||        ||||             |||||||||||| |||||||||||     
T  13721648 gccttggaaaaaaatagaacaaaggtacataacataaattgaagcaacatgagacaaataaacaattaaaaaaaaaccataataacataaatgatgaatc 13721747  T
Q  444 ttttgggaagttgttttcaagaggatttctttgag-tagatcctgctgccttgcgaaatgacatattcatctggcagacagcaaaatctaa 533  Q
    ||||||||||  ||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||| || |||| ||||||    
T  13721748 ttttgggaaggcgttttcaagaggatttctttgagttagattctgctgccttgccaaatgacatattcatctggcaaaccgcaagatctaa 13721838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 416 - 622
Target Start/End: Complemental strand, 40692744 - 40692537
Alignment:
Q  416 aaaaccataataacagaaatgatgaattttttgggaagttgttttcaagaggatttctttgagta-gatcctgctgccttgcgaaatgacatattcatct 514  Q
    ||||||||||||||| ||||| ||||| ||| |||||  |||||||||||||||||||||||||  |||||||||||||||| |||||||||||||||||    
T  40692744 aaaaccataataacataaatgttgaatctttcgggaaagtgttttcaagaggatttctttgagttcgatcctgctgccttgccaaatgacatattcatct 40692645  T
Q  515 ggcagacagcaaaatctaactcatagcaacttcttgatatttttgagttatctatctatcaaggaggcatcaatgaatatctatatatttttgaaagcat 614  Q
    ||||| ||| |  ||| ||||||||| ||  |||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||| | |||||    
T  40692644 ggcaggcagaaggatcgaactcatagaaatctcttgatatttttgagttatctatgtatcaaggaggcatcaaggagtatctatatattttttacagcat 40692545  T
Q  615 gttgagga 622  Q
    ||||||||    
T  40692544 gttgagga 40692537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 416 - 622
Target Start/End: Complemental strand, 40762122 - 40761915
Alignment:
Q  416 aaaaccataataacagaaatgatgaattttttgggaagttgttttcaagaggatttctttgagt-agatcctgctgccttgcgaaatgacatattcatct 514  Q
    ||||| |||| |||| ||||||||||| |||| ||||| ||||||||||||||||||||||||| |||||  | |||||||| |||||||||||||||||    
T  40762122 aaaacaataaaaacataaatgatgaatcttttcggaaggtgttttcaagaggatttctttgagttagatcaagttgccttgccaaatgacatattcatct 40762023  T
Q  515 ggcagacagcaaaatctaactcatagcaacttcttgatatttttgagttatctatctatcaaggaggcatcaatgaatatctatatatttttgaaagcat 614  Q
    | ||| |||||| ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| || ||| |||||||||| || |||||    
T  40762022 gacaggcagcaagatctaactcatagcaacctcttgatatttttgagttatctatgtatcaaggaggcatcaaggagtatttatatattttcgacagcat 40761923  T
Q  615 gttgagga 622  Q
    | ||||||    
T  40761922 gctgagga 40761915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 263 - 559
Target Start/End: Original strand, 11647907 - 11648223
Alignment:
Q  263 gagggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagaccctttatttggttcgtttttgttgcgaa 362  Q
    ||||||||||||||||||||||||| || |||||||| || |||||||| ||||||||||||||||||||||| ||||||||| |||||||||||| |||    
T  11647907 gagggtttccggattttataatccgaaaagcatgaagttagtccggattttaaagtccgaactgcatcagaccttttatttggatcgtttttgttgagaa 11648006  T
Q  363 tgccttggnnnnnnntagaacaaaggtacataacataaatagaagcaaaat-------------------ctaaaaccataataacagaaatgatgaatt 443  Q
    ||||||||       ||||||||| |||||||||||||| |||||||| ||                     |||| |||||||||| |||||||||||     
T  11648007 tgccttggaaaaaaatagaacaaaagtacataacataaaaagaagcaacataaaataaataaacaattaaaaaaaatcataataacataaatgatgaatc 11648106  T
Q  444 ttttgggaagttgttttcaagaggatttctttgag-tagatcctgctgccttgcgaaatgacatattcatctggcagacagcaaaatctaactcatagca 542  Q
    |||||||||  | |||||||||||||||||||||| |||||| || || ||| | ||| ||||||||||||||| ||  ||||| |||||||||||||||    
T  11648107 ttttgggaatgtattttcaagaggatttctttgagttagatcatgttgtcttacaaaacgacatattcatctggaaggtagcaagatctaactcatagca 11648206  T
Q  543 acttcttgatatttttg 559  Q
    || ||||||||||||||    
T  11648207 acctcttgatatttttg 11648223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 416 - 622
Target Start/End: Original strand, 53511896 - 53512103
Alignment:
Q  416 aaaaccataataacagaaatgatgaattttttgggaagttgttttcaagaggatttctttgagta-gatcctgctgccttgcgaaatgacatattcatct 514  Q
    ||||||||||||||| ||||| ||||| ||| |||||| |||||||||||||||||||||||||  |||| |||| |||||| |||||||| ||||||||    
T  53511896 aaaaccataataacaaaaatgttgaatctttcgggaaggtgttttcaagaggatttctttgagttcgatcatgctcccttgccaaatgacacattcatct 53511995  T
Q  515 ggcagacagcaaaatctaactcatagcaacttcttgatatttttgagttatctatctatcaaggaggcatcaatgaatatctatatatttttgaaagcat 614  Q
    ||||| ||| |  ||| ||||||||| ||| ||||||||||||||||||||||||  ||||||||| |||||| || ||| ||||||||||||| |||||    
T  53511996 ggcaggcagaaggatcgaactcatagaaacctcttgatatttttgagttatctatgcatcaaggagacatcaaggagtatttatatatttttgacagcat 53512095  T
Q  615 gttgagga 622  Q
    | ||||||    
T  53512096 gctgagga 53512103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 262 - 402
Target Start/End: Original strand, 53511720 - 53511861
Alignment:
Q  262 tgagggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagaccc-tttatttggttcgtttttgttgcg 360  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| ||| ||||| ||||||| |||||     
T  53511720 tgagggtttccagactttataatccggaatgcatgaagctattccggattttaaagtccgaactacatcagacccttttgtttggatcgttttcgttgca 53511819  T
Q  361 aatgccttggnnnnnnntagaacaaaggtacataacataaat 402  Q
    ||||||||||       |||||||||||||||||||||||||    
T  53511820 aatgccttggaaaaaaatagaacaaaggtacataacataaat 53511861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 262 - 339
Target Start/End: Original strand, 51889303 - 51889380
Alignment:
Q  262 tgagggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagacccttt 339  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||    
T  51889303 tgagggtttccagattttataatccggaatgcatgaagctattccagattttaaagtccgaactgcatcagacccttt 51889380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 262 - 410
Target Start/End: Original strand, 53269584 - 53269731
Alignment:
Q  262 tgagggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagaccctttatttggttcgtttttgttgcga 361  Q
    |||| |||||||||||||||||||  |||| | ||||||||||||||||| ||||||  ||||| || |||||||||||||| | ||||||| |||||||    
T  53269584 tgagagtttccggattttataatcttgaatccttgaagctattccggattgtaaagtttgaactacaccagaccctttatttcgatcgttttcgttgcga 53269683  T
Q  362 atgccttggnnnnnnntagaacaaaggtacataacataaatagaagcaa 410  Q
    |||||||||       ||||||||| | |||||||||||||||||||||    
T  53269684 atgccttgg-aaaaaatagaacaaaagaacataacataaatagaagcaa 53269731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 262 - 339
Target Start/End: Complemental strand, 38990625 - 38990548
Alignment:
Q  262 tgagggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagacccttt 339  Q
    ||||| ||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||    
T  38990625 tgaggatttccagattttataatccggaatgcatgaagttattccggattttaaagtccgaactgcatcagacccttt 38990548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 262 - 320
Target Start/End: Original strand, 17647385 - 17647443
Alignment:
Q  262 tgagggtttccggattttataatccggaatgcatgaagctattccggattataaagtcc 320  Q
    ||||||||| | ||||||||| |||||||||||||||| ||||||||||||||||||||    
T  17647385 tgagggttttcagattttatagtccggaatgcatgaagttattccggattataaagtcc 17647443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 262 - 410
Target Start/End: Complemental strand, 40692920 - 40692769
Alignment:
Q  262 tgagggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagaccctttatttggttcgtttttgttgcga 361  Q
    ||||||||| | ||||||| |||||||||||||||||| |  |||||||| ||||||| | ||  |||||||||| ||  || | ||||||| |||| ||    
T  40692920 tgagggttttcagattttacaatccggaatgcatgaaggtggtccggattgtaaagtctggaccacatcagacccatttattagatcgttttcgttgtga 40692821  T
Q  362 atgccttg---gnnnnnnntagaacaaaggtacataacataaatagaagcaa 410  Q
    ||||||||   |        |||||||||||||||||||||||||||| |||    
T  40692820 atgccttgaaagaaaaaaaaagaacaaaggtacataacataaatagaatcaa 40692769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 378 - 410
Target Start/End: Complemental strand, 38990485 - 38990453
Alignment:
Q  378 tagaacaaaggtacataacataaatagaagcaa 410  Q
    ||||||||||||||||||||||||| |||||||    
T  38990485 tagaacaaaggtacataacataaattgaagcaa 38990453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 160; Significance: 6e-85; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 160; E-Value: 6e-85
Query Start/End: Original strand, 262 - 622
Target Start/End: Original strand, 13037082 - 13037464
Alignment:
Q  262 tgagggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagacccttta-tttggttcgtttttgttgcg 360  Q
    |||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||| |||||||||||||||  ||||| || |||| |||||     
T  13037082 tgagggtttccggattttataatctggaatgcataaagctattccggattttaaagtccgaattgcatcagacccttttgtttggatcattttcgttgca 13037181  T
Q  361 aatgccttggnnnnnnntagaacaaaggtacataacataaatagaagcaaaat--------------ct------aaaaccataataacagaaatgatga 440  Q
    ||||||||||       || |||||||||||||||||||||| ||||||| ||              ||      |||||||||||||||||||||||||    
T  13037182 aatgccttggaaaaaaataaaacaaaggtacataacataaattgaagcaacataagacaaataaacacttaaaaaaaaaccataataacagaaatgatga 13037281  T
Q  441 attttttgggaagttgttttcaagaggatttctttgagta-gatcctgctgccttgcgaaatgacatattcatctggcagacagcaaaatctaactcata 539  Q
    || ||||| |||| |||||||||||||||||||||||||  || |||| |||||||| |||||||||||||||||||||| |||||| ||||||||||||    
T  13037282 atcttttgagaaggtgttttcaagaggatttctttgagtttgagcctgttgccttgccaaatgacatattcatctggcaggcagcaagatctaactcata 13037381  T
Q  540 gcaacttcttgatatttttgagttatctatctatcaaggaggcatcaatgaatatctatatatttttgaaagcatgttgagga 622  Q
     |||| |||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||| |||| | ||||||    
T  13037382 tcaacctcttgatatttttgagttatctatgtatcaaggaggcatcaaggagtatctatatatttttgacagcaagctgagga 13037464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 138; E-Value: 9e-72
Query Start/End: Original strand, 262 - 601
Target Start/End: Original strand, 480512 - 480871
Alignment:
Q  262 tgagggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagacccttta-tttggttcgtttttgttgcg 360  Q
    ||||||||| ||||||||||||||  ||||||||||||||||||| |||| ||||||  |||||||||||||||||||  ||||| ||||||| |||||     
T  480512 tgagggttttcggattttataatctagaatgcatgaagctattccagattttaaagtttgaactgcatcagacccttttgtttggatcgttttcgttgca 480611  T
Q  361 aatgccttggnnnnnnntagaacaaaggtacataacataaatagaagcaaaatct-------------------aaaaccataataacagaaatgatgaa 441  Q
    |||||||||        ||||||||||||||||||||||||| ||||||| ||                     ||||||||||||||| ||||||||||    
T  480612 aatgccttg-aaaaaaatagaacaaaggtacataacataaattgaagcaacatgagacaaataaacagttaaaaaaaaccataataacataaatgatgaa 480710  T
Q  442 ttttttgggaagttgttttcaagaggatttctttgagt-agatcctgctgccttgcgaaatgacatattcatctggcagacagcaaaatctaactcatag 540  Q
    | |||||||||  ||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||| | |||||||||||||    
T  480711 tcttttgggaatgtgttttcaagaggatttctttgagttagatcttgctgccttgccaaatgacatattcatctggcagacagccagatctaactcatag 480810  T
Q  541 caacttcttgatatttttgagttatctatctatcaaggaggcatcaatgaatatctatata 601  Q
    |||| |||| ||||||||||||||||| | ||||||||||||||||| || ||||||||||    
T  480811 caacctctttatatttttgagttatctgtatatcaaggaggcatcaaggagtatctatata 480871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 262 - 410
Target Start/End: Original strand, 34949725 - 34949874
Alignment:
Q  262 tgagggtttccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagaccc-tttatttggttcgtttttgttgcg 360  Q
    |||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||| ||||||| |||||     
T  34949725 tgagggtttctggattttataatctggaatgcatgaagctattccggattttaaagtctgaactgcatcagacccttttatttggatcgttttcgttgca 34949824  T
Q  361 aatgccttggnnnnnnntagaacaaaggtacataacataaatagaagcaa 410  Q
    ||||| ||||       ||||||||||||||||||||||||| |||||||    
T  34949825 aatgcattggaaaaaaatagaacaaaggtacataacataaattgaagcaa 34949874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 522 - 658
Target Start/End: Complemental strand, 3514185 - 3514050
Alignment:
Q  522 agcaaaatctaactcatagcaacttcttgatatttttgagttatctatctatcaaggaggcatcaatgaatatctatatatttttgaaagcatgttgagg 621  Q
    ||||| ||||||||||||||||| ||||||||||||||||| ||||||||||| |||| ||| ||| || |||||||||||||||||||||||| | | |    
T  3514185 agcaagatctaactcatagcaacctcttgatatttttgagt-atctatctatcgaggatgcagcaaggagtatctatatatttttgaaagcatgctaaag 3514087  T
Q  622 aggttaaccatgttggcacatagagagcaatctattt 658  Q
    |  || |||||| ||||||||||||||||||||||||    
T  3514086 atcttcaccatgctggcacatagagagcaatctattt 3514050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 458 - 552
Target Start/End: Complemental strand, 12304841 - 12304746
Alignment:
Q  458 tttcaagaggatttctttgagt-agatcctgctgccttgcgaaatgacatattcatctggcagacagcaaaatctaactcatagcaacttcttgat 552  Q
    |||||||||||||||||||||| ||||| || |||||||  ||||||| ||||||||||||||  ||||| ||||||||||||| ||| |||||||    
T  12304841 tttcaagaggatttctttgagttagatcatgttgccttgacaaatgacttattcatctggcaggaagcaagatctaactcatagaaacctcttgat 12304746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 275 - 413
Target Start/End: Complemental strand, 12305012 - 12304873
Alignment:
Q  275 attttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagaccctttatt-tggttcgttttt-gttgcgaatgccttggnn 372  Q
    |||||||| ||||||||||||||||    ||||||||||||| || ||||||||||||||||| |||| ||| |||||||| || ||||||| |||||      
T  12305012 attttatattccggaatgcatgaagtctgtccggattataaaatctgaactgcatcagaccctgtattctggatcgtttttcgtggcgaatggcttgg-a 12304914  T
Q  373 nnnnntagaacaaaggtacataacataaatagaagcaaaat 413  Q
         || ||||||||||||||||||||||| || ||||||    
T  12304913 aaaaataaaacaaaggtacataacataaataaaaacaaaat 12304873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 104; Significance: 2e-51; HSPs: 2)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 270 - 568
Target Start/End: Original strand, 12368 - 12686
Alignment:
Q  270 tccggattttataatccggaatgcatgaagctattccggattataaagtccgaactgcatcagaccctttatttggttcgtttttgttgcgaatgccttg 369  Q
    |||||||||||||||||||||||||||||| |  |||||||||||||||| |||| |||||||||||||| ||||| ||||||| |||||||||||||||    
T  12368 tccggattttataatccggaatgcatgaaggtgatccggattataaagtctgaaccgcatcagaccctttttttggatcgttttcgttgcgaatgccttg 12467  T
Q  370 gnnnnnnntagaacaaaggtacataacataaatagaagcaaaat-------ctaaa-------------accataataacagaaatgatgaattttttgg 449  Q
    |       ||||||||||||||||||||||||||||| ||| ||        ||||             |||||||||||| ||||| ||||| ||| ||    
T  12468 g-aaaaaatagaacaaaggtacataacataaatagaatcaacataagacaaataaacagttgaaaaaaaaccataataacataaatgttgaatctttcgg 12566  T
Q  450 gaagttgttttcaagaggatttctttgag-tagatcctgctgccttgcgaaatgacatattcatctggcagacagcaaaatctaactcatagcaacttct 548  Q
     ||| |||||||||||||||||||||||| |  ||||||||||||||| ||||||||||||||||| |||| ||| |  ||| ||||||||| ||| |||    
T  12567 aaaggtgttttcaagaggatttctttgagttccatcctgctgccttgccaaatgacatattcatctagcaggcagaaggatcgaactcatagaaacctct 12666  T
Q  549 tgatatttttgagttatcta 568  Q
    ||||||||||||||||||||    
T  12667 tgatatttttgagttatcta 12686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 561 - 622
Target Start/End: Original strand, 16100 - 16161
Alignment:
Q  561 gttatctatctatcaaggaggcatcaatgaatatctatatatttttgaaagcatgttgagga 622  Q
    ||||||||| | ||||||||||||||| || ||||||||||||||||| | |||| ||||||    
T  16100 gttatctatgtgtcaaggaggcatcaaggagtatctatatatttttgacaacatgctgagga 16161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 592 - 658
Target Start/End: Complemental strand, 62524 - 62458
Alignment:
Q  592 tatctatatatttttgaaagcatgttgaggaggttaaccatgttggcacatagagagcaatctattt 658  Q
    ||||||||||||||| |||||||||||||||  || | || | || | |||||||||||||||||||    
T  62524 tatctatatattttttaaagcatgttgaggatcttcatcacgctgtcgcatagagagcaatctattt 62458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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