View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4018_high_1 (Length: 498)

Name: NF4018_high_1
Description: NF4018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4018_high_1
NF4018_high_1
[»] chr4 (27 HSPs)
chr4 (16-483)||(34946058-34946523)
chr4 (72-423)||(11197028-11197382)
chr4 (108-423)||(10396223-10396536)
chr4 (173-399)||(12717932-12718160)
chr4 (72-239)||(34946400-34946573)
chr4 (86-239)||(10396120-10396273)
chr4 (201-274)||(2917271-2917344)
chr4 (129-273)||(47680575-47680720)
chr4 (206-348)||(47680789-47680935)
chr4 (72-212)||(11196948-11197092)
chr4 (353-423)||(11197318-11197388)
chr4 (88-238)||(922410-922558)
chr4 (85-237)||(53468011-53468164)
chr4 (201-272)||(8445811-8445882)
chr4 (182-309)||(47681075-47681205)
chr4 (163-378)||(11307383-11307599)
chr4 (349-422)||(922511-922584)
chr4 (206-269)||(47680328-47680392)
chr4 (110-161)||(34646687-34646738)
chr4 (426-480)||(10396459-10396513)
chr4 (109-146)||(54936278-54936315)
chr4 (110-146)||(23817719-23817755)
chr4 (110-146)||(25483418-25483454)
chr4 (110-146)||(36629319-36629355)
chr4 (110-146)||(39792898-39792934)
chr4 (110-146)||(50630793-50630829)
chr4 (110-146)||(54343046-54343082)
[»] chr7 (22 HSPs)
chr7 (64-423)||(21416135-21416497)
chr7 (121-405)||(27597803-27598092)
chr7 (260-423)||(23568901-23569068)
chr7 (72-237)||(21416433-21416598)
chr7 (105-236)||(28445164-28445297)
chr7 (187-282)||(11776181-11776276)
chr7 (89-146)||(36675666-36675723)
chr7 (129-237)||(11776406-11776514)
chr7 (159-238)||(36675183-36675262)
chr7 (110-160)||(45433309-45433359)
chr7 (86-146)||(23569018-23569078)
chr7 (427-483)||(27598025-27598081)
chr7 (140-389)||(2463283-2463533)
chr7 (201-293)||(8802427-8802520)
chr7 (109-146)||(30244352-30244389)
chr7 (110-146)||(23417-23453)
chr7 (109-145)||(7554108-7554144)
chr7 (110-146)||(28300293-28300329)
chr7 (110-146)||(29157647-29157683)
chr7 (110-146)||(30245159-30245195)
chr7 (110-146)||(30253574-30253610)
chr7 (110-146)||(47129451-47129487)
[»] chr5 (21 HSPs)
chr5 (57-423)||(13112794-13113163)
chr5 (105-423)||(13042346-13042662)
chr5 (57-423)||(13042796-13043167)
chr5 (105-423)||(13112340-13112660)
chr5 (178-423)||(36389102-36389346)
chr5 (75-268)||(13112670-13112855)
chr5 (108-268)||(13042672-13042824)
chr5 (181-287)||(14168874-14168981)
chr5 (202-293)||(41341390-41341482)
chr5 (62-136)||(13042346-13042420)
chr5 (62-136)||(13112340-13112414)
chr5 (86-166)||(36388992-36389072)
chr5 (112-161)||(42405638-42405687)
chr5 (110-146)||(9498694-9498730)
chr5 (110-157)||(25328006-25328053)
chr5 (109-146)||(26074185-26074222)
chr5 (109-146)||(26074694-26074731)
chr5 (110-147)||(41632863-41632900)
chr5 (110-146)||(301033-301069)
chr5 (110-146)||(6500532-6500568)
chr5 (110-146)||(33747853-33747889)
[»] chr6 (11 HSPs)
chr6 (110-423)||(11637761-11638079)
chr6 (168-333)||(7301398-7301564)
chr6 (73-146)||(11638016-11638089)
chr6 (231-423)||(15092151-15092347)
chr6 (110-161)||(8481993-8482044)
chr6 (109-143)||(10073655-10073689)
chr6 (109-146)||(10074402-10074439)
chr6 (109-138)||(10902469-10902498)
chr6 (110-146)||(3058308-3058344)
chr6 (110-146)||(3409341-3409377)
chr6 (110-146)||(16107760-16107796)
[»] chr3 (31 HSPs)
chr3 (116-334)||(16143330-16143550)
chr3 (154-345)||(40195904-40196099)
chr3 (129-287)||(43978634-43978792)
chr3 (87-237)||(48127832-48127982)
chr3 (129-280)||(32200987-32201138)
chr3 (112-287)||(54017590-54017766)
chr3 (116-283)||(17731950-17732118)
chr3 (116-283)||(19033181-19033349)
chr3 (109-238)||(53595950-53596079)
chr3 (109-238)||(53596265-53596394)
chr3 (225-273)||(32201278-32201326)
chr3 (86-143)||(53596560-53596617)
chr3 (332-399)||(43978548-43978615)
chr3 (360-423)||(48127605-48127668)
chr3 (205-292)||(16869647-16869736)
chr3 (361-423)||(48127819-48127881)
chr3 (373-423)||(53596567-53596617)
chr3 (109-157)||(8327975-8328023)
chr3 (88-144)||(48127620-48127676)
chr3 (110-161)||(37990679-37990730)
chr3 (110-161)||(54017856-54017907)
chr3 (154-287)||(23162126-23162259)
chr3 (109-162)||(39336009-39336062)
chr3 (109-146)||(47964954-47964991)
chr3 (109-146)||(53118014-53118051)
chr3 (114-146)||(4823737-4823769)
chr3 (109-145)||(11661603-11661639)
chr3 (353-423)||(16143530-16143597)
chr3 (110-146)||(22304651-22304687)
chr3 (109-157)||(39914323-39914371)
chr3 (110-146)||(43346831-43346867)
[»] chr1 (18 HSPs)
chr1 (85-405)||(31973350-31973674)
chr1 (191-423)||(34665930-34666166)
chr1 (88-244)||(12466267-12466423)
chr1 (191-423)||(47159103-47159337)
chr1 (110-161)||(11977011-11977062)
chr1 (152-237)||(26231511-26231596)
chr1 (81-237)||(31973637-31973793)
chr1 (372-423)||(31973350-31973401)
chr1 (110-160)||(11977348-11977398)
chr1 (232-346)||(43834374-43834491)
chr1 (109-146)||(17294659-17294696)
chr1 (109-146)||(26661561-26661598)
chr1 (110-143)||(44043812-44043845)
chr1 (110-146)||(14318949-14318985)
chr1 (110-146)||(26661938-26661974)
chr1 (109-145)||(34365008-34365044)
chr1 (110-146)||(41759565-41759601)
chr1 (110-138)||(47159311-47159339)
[»] chr2 (28 HSPs)
chr2 (86-346)||(28226536-28226796)
chr2 (85-238)||(28226327-28226480)
chr2 (197-401)||(35414271-35414476)
chr2 (159-239)||(13792583-13792663)
chr2 (336-401)||(35448596-35448661)
chr2 (56-136)||(22062780-22062860)
chr2 (182-293)||(11727758-11727869)
chr2 (336-423)||(22062773-22062860)
chr2 (114-237)||(30219925-30220048)
chr2 (154-287)||(19548086-19548218)
chr2 (427-480)||(30219943-30219996)
chr2 (110-146)||(3672783-3672819)
chr2 (110-146)||(37106006-37106042)
chr2 (336-423)||(28226746-28226833)
chr2 (107-146)||(28254274-28254313)
chr2 (112-146)||(5543040-5543074)
chr2 (304-401)||(13792248-13792339)
chr2 (426-480)||(19548187-19548241)
chr2 (109-147)||(33954301-33954339)
chr2 (187-273)||(44981880-44981965)
chr2 (110-143)||(15511535-15511568)
chr2 (109-146)||(28531353-28531390)
chr2 (109-146)||(30313259-30313296)
chr2 (110-215)||(35414470-35414575)
chr2 (110-146)||(6421813-6421849)
chr2 (110-146)||(36178211-36178247)
chr2 (110-146)||(36178645-36178681)
chr2 (201-282)||(40053398-40053481)
[»] chr8 (19 HSPs)
chr8 (129-307)||(5981501-5981680)
chr8 (63-195)||(18829835-18829967)
chr8 (265-423)||(3671046-3671207)
chr8 (353-423)||(18829838-18829908)
chr8 (154-322)||(2954309-2954477)
chr8 (225-283)||(23753054-23753112)
chr8 (110-146)||(40579309-40579345)
chr8 (105-219)||(3671176-3671290)
chr8 (110-146)||(33113407-33113443)
chr8 (110-161)||(3669754-3669805)
chr8 (110-161)||(34834943-34834994)
chr8 (110-144)||(30359693-30359727)
chr8 (110-146)||(147902-147938)
chr8 (335-423)||(3670777-3670865)
chr8 (108-144)||(3670993-3671029)
chr8 (110-146)||(5915949-5915985)
chr8 (110-146)||(6651576-6651612)
chr8 (110-146)||(20870613-20870649)
chr8 (110-146)||(30441167-30441203)
[»] scaffold0078 (2 HSPs)
scaffold0078 (109-146)||(5064-5101)
scaffold0078 (110-146)||(5439-5475)


Alignment Details
Target: chr4 (Bit Score: 412; Significance: 0; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 16 - 483
Target Start/End: Original strand, 34946058 - 34946523
Alignment:
Q  16 tcaacatagacacatcatcattgataataatttgtgttgagagtccggggagcacatggagcgataataggctaaacgtctaggaccttctaagagagag 115  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34946058 tcaacatagacacatcaacattgataataatttgtgttgagagtccggg-agcacatggagcgataataggctaaacgtctaggaccttctaagagagag 34946156  T
Q  116 acaccacactcttacccaaaatcctaaggcatgaagtttatgagtctcctcccttaaatattcaatgtttgctccatttcgagttgatgtgggacattat 215  Q
    |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||    
T  34946157 acaccacactcttacccaaaatcctaaggcatgaggtttacgagtctcctcccttaaatattcaacgtttgctccatttcaagttgatgtgggacattat 34946256  T
Q  216 cactaacatttgatttccaacaatctccctctcaagtgtgactcacccacatcactaggatgatccaaactatgatccaattcccactcccccagcaaac 315  Q
    |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||    
T  34946257 cactcacacttgatttccaacaatctccctctcaagtgtgactcacccacatcactaggatgatccaaactatgatcccagtcccactcccccagcaaac 34946356  T
Q  316 ctaaccaggctctgataccttgttggggagtctacgaagcgcttggagcggcaataggctaaacgtctaggacccactaagagagagacactacactctt 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34946357 ctaaccaggctctgataccttgttggggagtctacgaagcgcttggagcggcaataggctaaacgtctaggacccactaagagagagacactacactctt 34946456  T
Q  416 acccaaaagaccaaaaccctaagacatcaggtttatgggtctcttctcttaaatatccaacatttgct 483  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  34946457 -cccaaaagaccaaaaccctaagacatcaggtttatgggtctcttctcttaaatatccaacgtttgct 34946523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 72 - 423
Target Start/End: Complemental strand, 11197382 - 11197028
Alignment:
Q  72 tggagcgataataggctaaacgtctaggaccttctaagagagagacaccacactcttacccaaaatcctaaggcatgaagtttatgagtctcctccctta 171  Q
    |||||||  ||| ||||||||  ||||||||  |||||||||||||||||||||||||||||||| |||||||||    ||||||| |||||||| ||||    
T  11197382 tggagcggcaatgggctaaacacctaggaccagctaagagagagacaccacactcttacccaaaaccctaaggcaatgggtttatgggtctcctctctta 11197283  T
Q  172 aatattcaatgtttgctccatttcgagttgatgtgggacattatcactaacatttgatttccaacaatctccctctcaagtgtgactcacccacatcact 271  Q
     |||| ||| |||| ||||||||| ||| |||||| | ||| |||||| ||| ||| |||  |||||||||||  |||||||| ||||||||||||||||    
T  11197282 tatatccaacgtttcctccatttctagtcgatgtgaggcataatcactcacacttggtttttaacaatctcccaatcaagtgttactcacccacatcact 11197183  T
Q  272 aggatgatccaaactatgatccaattcccactcccccagcaaacctaaccaggctctgatacc---ttgttggggagtctacgaagcgcttggagcggca 368  Q
    ||||||||||| || | |||||   ||||||||||||||||| |||||| |||||||||||||   ||||| ||||||||  | |||| |||||||||||    
T  11197182 aggatgatccacaccaggatcccgctcccactcccccagcaagcctaactaggctctgataccagtttgtttgggagtctggggagcgtttggagcggca 11197083  T
Q  369 ataggctaaacgtctaggacccactaagagagagacactacactcttacccaaaa 423  Q
    || ||||||||  ||||||||  |||||||||||||||  |||||||||| ||||    
T  11197082 atgggctaaacacctaggaccagctaagagagagacacctcactcttacctaaaa 11197028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 108 - 423
Target Start/End: Complemental strand, 10396536 - 10396223
Alignment:
Q  108 agagagagacaccacactcttacccaaaatcctaaggcatgaagtttatgagtctcctcccttaaatattcaatgtttgctccatttcgagttgatgtgg 207  Q
    ||||||||| |||||||||||| |||||| |||||||||    ||||||| |||||||| |||| |||| |||  ||| ||||||||| |||  || ||     
T  10396536 agagagagagaccacactcttatccaaaaccctaaggcaatgggtttatgggtctcctctcttatatatccaacatttcctccatttctagtcaatatga 10396437  T
Q  208 gacattatcactaacatttgatttccaacaatctccctctcaagtgtgactcacccacatcactaggatgatccaaactatgatccaattcccactcccc 307  Q
    ||||| |||||| ||| |||||||||||||||||||| ||||||| |||||| |||||||||||||||||||||| |||| ||      |||||||||||    
T  10396436 gacataatcactcacacttgatttccaacaatctccccctcaagtatgactcgcccacatcactaggatgatccacactagga------tcccactcccc 10396343  T
Q  308 cagcaaacctaaccaggctctgatacc---ttgttggg-gagtctacgaagcgcttggagcggcaataggctaaacgtctaggacccactaagagagaga 403  Q
    ||| || |||||| ||||||| || ||   |||||||| |||| |  | |||||| ||||||||||   |||||||||||| ||||| ||||||||||||    
T  10396342 cagaaagcctaactaggctctaatgccagtttgttgggagagtatggggagcgctgggagcggcaacgagctaaacgtctatgacccgctaagagagaga 10396243  T
Q  404 cactacactcttacccaaaa 423  Q
    ||| || |||||||| ||||    
T  10396242 caccaccctcttacctaaaa 10396223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 173 - 399
Target Start/End: Original strand, 12717932 - 12718160
Alignment:
Q  173 atattcaatgtttgctccatttcgagttgatgtgggacattatcactaacatttgatttccaacaatctccctctcaagtgtgactcacccacatcacta 272  Q
    |||||||| |||||||||||||| | |  |||||| |||||||| || ||| |||||||| |||||| |||  ||||||||||||| |||||||||||||    
T  12717932 atattcaacgtttgctccatttctaatcaatgtggaacattatctctcacacttgatttctaacaatttcctcctcaagtgtgactaacccacatcacta 12718031  T
Q  273 ggatgatccaaactatgatccaattcccactcccccagcaaacctaaccaggctctgatacc---ttgttggggagtctacgaagcgcttggagcggcaa 369  Q
    |||||||||| |||| |||||   ||||||||||||||||| |||||| ||||||| |||||   || |||||||| ||| | |||||||  ||||||||    
T  12718032 ggatgatccatactaggatcctgctcccactcccccagcaagcctaactaggctctaataccaatttattggggagactaag-agcgcttaaagcggcaa 12718130  T
Q  370 taggctaaacgtctaggacccactaagaga 399  Q
    |  ||||||||||||| ||| |||||||||    
T  12718131 tgagctaaacgtctagaaccaactaagaga 12718160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 72 - 239
Target Start/End: Original strand, 34946400 - 34946573
Alignment:
Q  72 tggagcgataataggctaaacgtctaggaccttctaagagagagacaccacactcttacc-------caaaatcctaaggcatgaagtttatgagtctcc 164  Q
    |||||||  ||||||||||||||||||||||  ||||||||||||||| |||||||| ||       ||||| |||||| ||| | ||||||| |||||     
T  34946400 tggagcggcaataggctaaacgtctaggacccactaagagagagacactacactcttcccaaaagaccaaaaccctaagacatcaggtttatgggtctct 34946499  T
Q  165 tcccttaaatattcaatgtttgctccatttcgagttgatgtgggacattatcactaacatttgatttccaacaat 239  Q
    || ||||||||| ||| |||||||||||||| ||| |||||| |||||||||||  ||| |||||||||||||||    
T  34946500 tctcttaaatatccaacgtttgctccatttctagtcgatgtgagacattatcac-cacacttgatttccaacaat 34946573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 86 - 239
Target Start/End: Complemental strand, 10396273 - 10396120
Alignment:
Q  86 gctaaacgtctaggaccttctaagagagagacaccacactcttacccaaaatcctaaggcatgaagtttatgagtctcctcccttaaatattcaatgttt 185  Q
    |||||||||||| ||||  |||||||||||||||||| |||||||| |||| |||||||||    ||||||| |||| ||| |||| ||||||||  |||    
T  10396273 gctaaacgtctatgacccgctaagagagagacaccaccctcttacctaaaaccctaaggcaatgggtttatgggtcttctctcttatatattcaacattt 10396174  T
Q  186 gctccatttcgagttgatgtgggacattatcactaacatttgatttccaacaat 239  Q
     |||||||||  || |||||| ||||| |||||| ||| |||||||||||||||    
T  10396173 cctccatttcttgtcgatgtgagacataatcactcacacttgatttccaacaat 10396120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 201 - 274
Target Start/End: Original strand, 2917271 - 2917344
Alignment:
Q  201 gatgtgggacattatcactaacatttgatttccaacaatctccctctcaagtgtgactcacccacatcactagg 274  Q
    ||||||||||||||||||| ||  ||||||||||||||||| || |||||||||||||||||||||||||||||    
T  2917271 gatgtgggacattatcactcacgattgatttccaacaatcttcccctcaagtgtgactcacccacatcactagg 2917344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 129 - 273
Target Start/End: Complemental strand, 47680720 - 47680575
Alignment:
Q  129 acccaaaatcctaaggcatgaagtttatgagtctcctcccttaaatattcaatgtttgctccatttcgagttgatgtgggacattatcactaacatttga 228  Q
    |||||||| | |||||||| | || |||| |||||||| | || ||||||||||||| ||||||||  | | |||||||||||| |||||| ||| || |    
T  47680720 acccaaaaccttaaggcatcaggtatatgggtctcctctcatatatattcaatgtttcctccatttataatcgatgtgggacataatcactcacacttaa 47680621  T
Q  229 -tttccaacaatctccctctcaagtgtgactcacccacatcactag 273  Q
     ||||||||||||| || ||||||||||| ||||||| ||||||||    
T  47680620 ttttccaacaatcttcccctcaagtgtgagtcacccatatcactag 47680575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 206 - 348
Target Start/End: Complemental strand, 47680935 - 47680789
Alignment:
Q  206 gggacattatcactaacatttgatttcc-aacaatctccctctcaagtgtgactcacccacatcactaggatgatccaaactatgatccaattcccactc 304  Q
    ||||||| |||||| ||| ||||||||| ||||||||||| ||||||||||| ||||||||||||||||  ||||||  |||| ||||| | |||| |||    
T  47680935 gggacataatcactcacacttgatttcccaacaatctccccctcaagtgtgagtcacccacatcactagcctgatcctcactaggatcccactcccgctc 47680836  T
Q  305 ccccagcaaacctaacca-ggctctgatacc--ttgttggggagtct 348  Q
    |||||   | |||||||| ||||||||||||  ||||||||| ||||    
T  47680835 ccccactgagcctaaccagggctctgataccagttgttggggtgtct 47680789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 72 - 212
Target Start/End: Complemental strand, 11197092 - 11196948
Alignment:
Q  72 tggagcgataataggctaaacgtctaggaccttctaagagagagacaccacactcttacccaaaatcctaaggcatgaagtttatgagtctcctccct-- 169  Q
    |||||||  ||| ||||||||  ||||||||  |||||||||||||||| |||||||||| ||||||||||||||    ||||| | |||||||| ||      
T  11197092 tggagcggcaatgggctaaacacctaggaccagctaagagagagacacctcactcttacctaaaatcctaaggcaatgggtttaagggtctcctctctct 11196993  T
Q  170 --taaatattcaatgtttgctccatttcgagttgatgtgggacat 212  Q
      || |||| ||| |||| ||||||||| ||||||||||||||||    
T  11196992 tatatatatccaacgtttcctccatttctagttgatgtgggacat 11196948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 353 - 423
Target Start/End: Complemental strand, 11197388 - 11197318
Alignment:
Q  353 agcgcttggagcggcaataggctaaacgtctaggacccactaagagagagacactacactcttacccaaaa 423  Q
    |||| ||||||||||||| ||||||||  ||||||||  ||||||||||||||| ||||||||||||||||    
T  11197388 agcgtttggagcggcaatgggctaaacacctaggaccagctaagagagagacaccacactcttacccaaaa 11197318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 88 - 238
Target Start/End: Complemental strand, 922558 - 922410
Alignment:
Q  88 taaacgtctaggaccttctaagagagagacaccacactcttacccaaaatcctaaggcatgaagtttatgagtctcctcccttaaatattcaatgtttgc 187  Q
    ||||||||||||| |  |||| |||||||||||||||||||| |||||  |||||| ||    ||||||| |||||||| |||  ||||  || ||||||    
T  922558 taaacgtctaggatccgctaaaagagagacaccacactcttatccaaacccctaagacaatgggtttatgggtctcctctcttctatatctaacgtttgc 922459  T
Q  188 tccatttcgagttgatgtgggacattatcactaacatttgatttccaacaa 238  Q
    | |||||| ||| |||||||||||| | ||||  || ||||||||||||||    
T  922458 ttcatttctagtcgatgtgggacataaacact--cacttgatttccaacaa 922410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 85 - 237
Target Start/End: Original strand, 53468011 - 53468164
Alignment:
Q  85 ggctaaacgtctaggaccttctaagagagagacac--cacactcttacccaaaatcctaaggcatgaagtttatgagtctcctcccttaaatattcaatg 182  Q
    |||||||||||||||| ||  ||||||||||| ||  ||||| |||| |||||| | |||  ||   |||||||| ||||||||  ||| ||||||||      
T  53468011 ggctaaacgtctaggatctgttaagagagagagacatcacacacttatccaaaagcttaaaacaatgagtttatgggtctcctct-ttatatattcaaca 53468109  T
Q  183 tttgctccatttcgagttgatgtgggacattatcactaacatttgatttccaaca 237  Q
    ||||||||||||| | | |||||| |||||||||||| ||| |||||||||||||    
T  53468110 tttgctccatttctaatcgatgtgagacattatcactcacacttgatttccaaca 53468164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 201 - 272
Target Start/End: Complemental strand, 8445882 - 8445811
Alignment:
Q  201 gatgtgggacattatcactaacatttgatttccaacaatctccctctcaagtgtgactcacccacatcacta 272  Q
    |||||||||||| |||||| | | ||||   ||||||||||||| ||||||||||| |||||||||||||||    
T  8445882 gatgtgggacataatcacttagacttgaaacccaacaatctccccctcaagtgtgattcacccacatcacta 8445811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 182 - 309
Target Start/End: Complemental strand, 47681205 - 47681075
Alignment:
Q  182 gtttgctccatttcgagttgatgtgggacattatcactaacatttgatttcc-aacaatctccctctcaagtgtg--actcacccacatcactaggatga 278  Q
    |||| ||||||||| | | |||| ||||||| |||||| ||| || |||||| ||||||||||| ||||||||||  | ||||||||||||||||  |||    
T  47681205 gtttcctccatttctaatcgatgcgggacataatcactcacactttatttcccaacaatctccccctcaagtgtgttagtcacccacatcactagcctga 47681106  T
Q  279 tccaaactatgatccaattcccactccccca 309  Q
    |||  |||| ||||| | |||| ||||||||    
T  47681105 tcctcactaggatcccactcccgctccccca 47681075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 163 - 378
Target Start/End: Original strand, 11307383 - 11307599
Alignment:
Q  163 cctcccttaaatattcaatgtttgctccatttcgagttgatgtgggacattatcactaacatttgatttccaacaatctccctctcaagtgtgactcacc 262  Q
    |||| |||| |||| ||| |||| ||||||||| |||||||||| |||||  ||| | ||| ||||||||  |||||||||| ||| ||||  | ||||     
T  11307383 cctctcttatatatccaaggtttcctccatttctagttgatgtgagacatagtcagtcacacttgatttctgacaatctccc-ctcgagtg--aatcaca 11307479  T
Q  263 cacatcactaggatgatccaaactatgatccaattcccactcccccagcaaacctaaccag-gctctgatacc---ttgttggggagtctacgaagcgct 358  Q
    |||||||||||  ||||||| |||| || || | |||| | |||||| ||| ||||||||| ||| |||||||   ||||||||||||||  | ||| ||    
T  11307480 cacatcactagcctgatccacactaggaacccactcccgcacccccatcaagcctaaccagagctatgataccagtttgttggggagtctggggagcact 11307579  T
Q  359 tggagcggcaataggctaaa 378  Q
     |||||| ||||| ||||||    
T  11307580 gggagcgacaataagctaaa 11307599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 349 - 422
Target Start/End: Complemental strand, 922584 - 922511
Alignment:
Q  349 acgaagcgcttggagcggcaataggctaaacgtctaggacccactaagagagagacactacactcttacccaaa 422  Q
    |||||||| |||||||||||||    ||||||||||||| || |||| |||||||||| ||||||||| |||||    
T  922584 acgaagcgtttggagcggcaatgacttaaacgtctaggatccgctaaaagagagacaccacactcttatccaaa 922511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 206 - 269
Target Start/End: Complemental strand, 47680392 - 47680328
Alignment:
Q  206 gggacattatcactaacatttgatttcc-aacaatctccctctcaagtgtgactcacccacatca 269  Q
    ||||||| |||||| ||| ||||||||| ||||||||||| ||||| ||||| ||||||||||||    
T  47680392 gggacataatcactcacacttgatttcccaacaatctccccctcaactgtgagtcacccacatca 47680328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 110 - 161
Target Start/End: Original strand, 34646687 - 34646738
Alignment:
Q  110 agagagacaccacactcttacccaaaatcctaaggcatgaagtttatgagtc 161  Q
    ||||||||||||||||||||||||||| | |||||||   ||||||||||||    
T  34646687 agagagacaccacactcttacccaaaaccttaaggcaatgagtttatgagtc 34646738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 426 - 480
Target Start/End: Complemental strand, 10396513 - 10396459
Alignment:
Q  426 ccaaaaccctaagacatcaggtttatgggtctcttctcttaaatatccaacattt 480  Q
    ||||||||||||| ||   |||||||||||||| ||||||| |||||||||||||    
T  10396513 ccaaaaccctaaggcaatgggtttatgggtctcctctcttatatatccaacattt 10396459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 146
Target Start/End: Complemental strand, 54936315 - 54936278
Alignment:
Q  109 gagagagacaccacactcttacccaaaatcctaaggca 146  Q
    |||||||||||||||||||||||||||| | |||||||    
T  54936315 gagagagacaccacactcttacccaaaaccttaaggca 54936278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 110 - 146
Target Start/End: Original strand, 23817719 - 23817755
Alignment:
Q  110 agagagacaccacactcttacccaaaatcctaaggca 146  Q
    ||||||||||||||||||||||||||| | |||||||    
T  23817719 agagagacaccacactcttacccaaaaccttaaggca 23817755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 110 - 146
Target Start/End: Complemental strand, 25483454 - 25483418
Alignment:
Q  110 agagagacaccacactcttacccaaaatcctaaggca 146  Q
    ||||||||||||||||||||||||||| | |||||||    
T  25483454 agagagacaccacactcttacccaaaaccttaaggca 25483418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 110 - 146
Target Start/End: Complemental strand, 36629355 - 36629319
Alignment:
Q  110 agagagacaccacactcttacccaaaatcctaaggca 146  Q
    ||||||||||||||||||||||||||| | |||||||    
T  36629355 agagagacaccacactcttacccaaaaccttaaggca 36629319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 110 - 146
Target Start/End: Original strand, 39792898 - 39792934
Alignment:
Q  110 agagagacaccacactcttacccaaaatcctaaggca 146  Q
    ||||||||||||||||||||||||||| | |||||||    
T  39792898 agagagacaccacactcttacccaaaaccttaaggca 39792934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 110 - 146
Target Start/End: Original strand, 50630793 - 50630829
Alignment:
Q  110 agagagacaccacactcttacccaaaatcctaaggca 146  Q
    ||||||||||||||||||||||||||| | |||||||    
T  50630793 agagagacaccacactcttacccaaaaccttaaggca 50630829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 110 - 146
Target Start/End: Original strand, 54343046 - 54343082
Alignment:
Q  110 agagagacaccacactcttacccaaaatcctaaggca 146  Q
    ||||||||||||||||||||||||||| | |||||||    
T  54343046 agagagacaccacactcttacccaaaaccttaaggca 54343082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 161; Significance: 1e-85; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 64 - 423
Target Start/End: Original strand, 21416135 - 21416497
Alignment:
Q  64 ggagcacatggagcgataataggctaaacgtctaggaccttctaagagagagacaccacactcttacccaaaatcctaaggcatgaagtttatgagtctc 163  Q
    ||||||| |||||||  ||| | |||||| |||||||||  |||||||||||||||||||||||||||||||| |||||||||    ||||||| |||||    
T  21416135 ggagcacttggagcggcaatggactaaacatctaggacccgctaagagagagacaccacactcttacccaaaaccctaaggcaatgggtttatgggtctc 21416234  T
Q  164 ctcccttaaatattcaatgtttgctccatttcgagttgatgtgggacattatcactaacatttgatttccaacaatctccctctcaagtgtgactcaccc 263  Q
    ||| |||| |||| |||| |||| ||||| || |||||||||||||||| |||||| ||| |||||| | || ||| |||| || |||||||||||||||    
T  21416235 ctctcttatatatccaatttttgttccatgtctagttgatgtgggacataatcactcacacttgattcctaaaaatttccccctgaagtgtgactcaccc 21416334  T
Q  264 acatcactaggatgatccaaactatgatccaattcccactcccccagcaaacctaaccaggctctgatacc---ttgttggggagtctacgaagcgcttg 360  Q
    ||||||||||||||||||| |||| |||||   ||||||||||||||||| |||||| |||||||||||||   ||||||||||||||  ||||||||||    
T  21416335 acatcactaggatgatccacactaggatcccgctcccactcccccagcaagcctaactaggctctgataccaatttgttggggagtctgggaagcgcttg 21416434  T
Q  361 gagcggcaataggctaaacgtctaggacccactaagagagagacactacactcttacccaaaa 423  Q
    ||||| |||| || | ||| |||||||||| ||||||||||||||| ||| ||||||||||||    
T  21416435 gagcgacaatgggttgaacatctaggacccgctaagagagagacaccacattcttacccaaaa 21416497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 121 - 405
Target Start/End: Complemental strand, 27598092 - 27597803
Alignment:
Q  121 acactcttacccaaaatcctaaggcatgaagtttatgagtctcctcccttaaatattcaatgtttgctccatttcgagttgatgtgggacattatcacta 220  Q
    |||||||||| ||||| |||||| ||    ||||||| |||||||| |||| |||| ||| |||||||| ||||  ||| |||||| ||||||||||||     
T  27598092 acactcttacgcaaaaccctaagacaatgggtttatgggtctcctctcttatatatccaacgtttgctcaatttatagtcgatgtgagacattatcactc 27597993  T
Q  221 acatttgatttccaacaatctccctctcaagtgtgactcacccacatcactaggatgatccaaactatgat--ccaattcccactcccccagcaaaccta 318  Q
    ||| |||||||||||| ||||| |  |||||||||||||||||||||||||||||||||||| |||| | |  ||   ||||||||||||||||| ||||    
T  27597992 acacttgatttccaacgatctctccttcaagtgtgactcacccacatcactaggatgatccacactagggtcccccgctcccactcccccagcaagccta 27597893  T
Q  319 accaggctctgatacc---ttgttggggagtctacgaagcgcttggagcggcaataggctaaacgtctaggacccactaagagagagaca 405  Q
    | ||||||||||||||   || |||||||||||  | ||||||||||||| |||| || ||||  |||||||||||| | ||||||||||    
T  27597892 atcaggctctgataccagtttattggggagtctggggagcgcttggagcgacaatgggttaaatatctaggacccacaatgagagagaca 27597803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 260 - 423
Target Start/End: Original strand, 23568901 - 23569068
Alignment:
Q  260 acccacatcactaggatgatccaaactatgatccaattcccactcccccagcaaa-cctaaccaggctctgatacc---ttgttggggagtctacgaagc 355  Q
    ||||||||||||||||||||||| |||| |||||   |||||||||||||||||| |||||||||||| |||||||   ||||||||||||||  | |||    
T  23568901 acccacatcactaggatgatccacactaggatcctgctcccactcccccagcaaagcctaaccaggctatgataccagtttgttggggagtctggggagc 23569000  T
Q  356 gcttggagcggcaataggctaaacgtctaggacccactaagagagagacactacactcttacccaaaa 423  Q
      | | |||||||||  |||||||||||||||||||||||  ||||||||  ||||||||||||||||    
T  23569001 attggtagcggcaatgagctaaacgtctaggacccactaaatgagagacatcacactcttacccaaaa 23569068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 72 - 237
Target Start/End: Original strand, 21416433 - 21416598
Alignment:
Q  72 tggagcgataataggctaaacgtctaggaccttctaagagagagacaccacactcttacccaaaatcctaaggcatgaagtttatgagtctcctccctta 171  Q
    |||||||| ||| || | ||| |||||||||  ||||||||||||||||||| |||||||||||| || ||| ||   |||||||| |||||| | ||||    
T  21416433 tggagcgacaatgggttgaacatctaggacccgctaagagagagacaccacattcttacccaaaacccaaagacaacgagtttatgggtctccgctctta 21416532  T
Q  172 aatattcaatgtttgctccatttcgagttgatgtgggacattatcactaacatttgatttccaaca 237  Q
     |||  |||  ||||||||||||   |||||||||| |||| |||||| ||| |||||||| ||||    
T  21416533 tataaccaacttttgctccatttattgttgatgtggaacataatcactcacacttgatttctaaca 21416598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 105 - 236
Target Start/End: Original strand, 28445164 - 28445297
Alignment:
Q  105 ctaagagagagacaccacactcttacccaaaatcctaagg---catgaagtttatgagtctcctcccttaaatattcaatgtttgctccatttcgagttg 201  Q
    ||||||||||||||||||||||||| ||||||  ||||||   ||  |  |||||| |||| ||| |||| |||| |||| ||||||||||| | ||| |    
T  28445164 ctaagagagagacaccacactcttatccaaaacactaaggaggcaatatatttatgggtcttctctcttatatatccaatatttgctccatt-ctagtcg 28445262  T
Q  202 atgtgggacattatcactaacatttgatttccaac 236  Q
    |||||||||||||||||| ||| ||||||||||||    
T  28445263 atgtgggacattatcactcacagttgatttccaac 28445297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 187 - 282
Target Start/End: Original strand, 11776181 - 11776276
Alignment:
Q  187 ctccatttcgagttgatgtgggacattatcactaacatttgatttccaacaatctccctctcaagtgtgactcacccacatcactaggatgatcca 282  Q
    ||||||| | |||||||||||||||| |||| | ||| |||| | ||||||||||||| ||||||| ||| ||||||||||||||||  |||||||    
T  11776181 ctccattcctagttgatgtgggacataatcattcacacttgaatcccaacaatctccccctcaagtatgagtcacccacatcactagcctgatcca 11776276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 89 - 146
Target Start/End: Complemental strand, 36675723 - 36675666
Alignment:
Q  89 aaacgtctaggaccttctaagagagagacaccacactcttacccaaaatcctaaggca 146  Q
    |||||||||||||||  |||||||||||||||||||| ||| ||||||||||||||||    
T  36675723 aaacgtctaggacctgttaagagagagacaccacactattatccaaaatcctaaggca 36675666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 129 - 237
Target Start/End: Original strand, 11776406 - 11776514
Alignment:
Q  129 acccaaaatcctaaggcatgaagtttatgagtctcctcccttaaatattcaatgtttgctccatttcgagttgatgtgggacattatcactaacatttga 228  Q
    |||||||| | ||||| || | || |||| ||| |||| |||| ||||||||||||| ||||||| | |||||||||||||||| |||||| ||| ||||    
T  11776406 acccaaaaccttaaggtattatgtatatgggtcccctctcttatatattcaatgtttcctccattcctagttgatgtgggacataatcactcacacttga 11776505  T
Q  229 tttccaaca 237  Q
     | ||||||    
T  11776506 atcccaaca 11776514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 159 - 238
Target Start/End: Complemental strand, 36675262 - 36675183
Alignment:
Q  159 gtctcctcccttaaatattcaatgtttgctccatttcgagttgatgtgggacattatcactaacatttgatttccaacaa 238  Q
    ||||| || |||| |||| ||| |||| ||||||||  ||| ||||||||||||||||||| ||||||||||| ||||||    
T  36675262 gtctcatctcttatatatccaacgttttctccatttatagtcgatgtgggacattatcactcacatttgattttcaacaa 36675183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 110 - 160
Target Start/End: Complemental strand, 45433359 - 45433309
Alignment:
Q  110 agagagacaccacactcttacccaaaatcctaaggcatgaagtttatgagt 160  Q
    ||||||||||||||||||||||||||||| |||||||  | ||||||||||    
T  45433359 agagagacaccacactcttacccaaaatcttaaggcaataggtttatgagt 45433309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 86 - 146
Target Start/End: Original strand, 23569018 - 23569078
Alignment:
Q  86 gctaaacgtctaggaccttctaagagagagacaccacactcttacccaaaatcctaaggca 146  Q
    |||||||||||||||||  ||||  |||||||| ||||||||||||||||| | |||||||    
T  23569018 gctaaacgtctaggacccactaaatgagagacatcacactcttacccaaaaccttaaggca 23569078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 427 - 483
Target Start/End: Complemental strand, 27598081 - 27598025
Alignment:
Q  427 caaaaccctaagacatcaggtttatgggtctcttctcttaaatatccaacatttgct 483  Q
    |||||||||||||||   |||||||||||||| ||||||| ||||||||| ||||||    
T  27598081 caaaaccctaagacaatgggtttatgggtctcctctcttatatatccaacgtttgct 27598025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 140 - 389
Target Start/End: Complemental strand, 2463533 - 2463283
Alignment:
Q  140 taaggcatgaagtttatgagtctcctcccttaaatattcaatgtttgctccatttcgagttgatgtgggacattatcactaacatttgatttccaacaat 239  Q
    |||||||| | || |||| ||| |||| |||| |||| |||| ||| ||||||||| |    ||||||||||| || ||| ||| |||||||  || |||    
T  2463533 taaggcatcaggtatatgtgtcccctctcttatatatccaatatttcctccatttctaaccaatgtgggacataattactcacacttgatttttaataat 2463434  T
Q  240 ctccctctcaagtgtgactcacccacatcactaggatgatccaaactatgatccaattcccactcccccagcaaacctaaccaggct-ctgatacc--tt 336  Q
    |||||||  ||||| |  ||||||| ||||||||  | ||||| || ||||||| | ||||||||| ||| | | |||||||||| | ||||||||  ||    
T  2463433 ctccctcataagtgag--tcacccatatcactagcctaatccacacgatgatcccactcccactcctccatcgagcctaaccagggttctgataccactt 2463336  T
Q  337 gttggggagtctacgaagcgcttggagcggcaataggctaaacgtctaggacc 389  Q
    |||| |||||| | | ||||   ||| |||||||||||||||| || ||||||    
T  2463335 gttgaggagtccagggagcgtcgggaacggcaataggctaaacatccaggacc 2463283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 293
Target Start/End: Complemental strand, 8802520 - 8802427
Alignment:
Q  201 gatgtgggacattatcactaacatttgatttcc-aacaatctccctctcaagtgtgactcacccacatcactaggatgatccaaactatgatcc 293  Q
    |||||||||||| |||||| ||| | |||| || ||||||||  | ||||||||||| ||| ||||||||||||  ||||||| |||| |||||    
T  8802520 gatgtgggacataatcactcacactagattacccaacaatctttccctcaagtgtgaatcagccacatcactagcctgatccatactaggatcc 8802427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 146
Target Start/End: Complemental strand, 30244389 - 30244352
Alignment:
Q  109 gagagagacaccacactcttacccaaaatcctaaggca 146  Q
    |||||||||||||||||||||||||||| | |||||||    
T  30244389 gagagagacaccacactcttacccaaaaccttaaggca 30244352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 110 - 146
Target Start/End: Original strand, 23417 - 23453
Alignment:
Q  110 agagagacaccacactcttacccaaaatcctaaggca 146  Q
    ||||||||||||||||||||||||||| | |||||||    
T  23417 agagagacaccacactcttacccaaaaccttaaggca 23453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 109 - 145
Target Start/End: Complemental strand, 7554144 - 7554108
Alignment:
Q  109 gagagagacaccacactcttacccaaaatcctaaggc 145  Q
    |||||||||||||||||||||||||||| | ||||||    
T  7554144 gagagagacaccacactcttacccaaaaccttaaggc 7554108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 110 - 146
Target Start/End: Original strand, 28300293 - 28300329
Alignment:
Q  110 agagagacaccacactcttacccaaaatcctaaggca 146  Q
    |||||||| |||||||||||||||||||| |||||||    
T  28300293 agagagacgccacactcttacccaaaatcttaaggca 28300329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 110 - 146
Target Start/End: Complemental strand, 29157683 - 29157647
Alignment:
Q  110 agagagacaccacactcttacccaaaatcctaaggca 146  Q
    ||||||||||||||||||||||||||| | |||||||    
T  29157683 agagagacaccacactcttacccaaaaccttaaggca 29157647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 110 - 146
Target Start/End: Complemental strand, 30245195 - 30245159
Alignment:
Q  110 agagagacaccacactcttacccaaaatcctaaggca 146  Q
    ||||||||||||||||||||||||||| | |||||||    
T  30245195 agagagacaccacactcttacccaaaaccttaaggca 30245159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 110 - 146
Target Start/End: Complemental strand, 30253610 - 30253574
Alignment:
Q  110 agagagacaccacactcttacccaaaatcctaaggca 146  Q
    ||||||||||||||||||||||||||| | |||||||    
T  30253610 agagagacaccacactcttacccaaaaccttaaggca 30253574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 110 - 146
Target Start/End: Complemental strand, 47129487 - 47129451
Alignment:
Q  110 agagagacaccacactcttacccaaaatcctaaggca 146  Q
    ||||||||||||||||||||||||||| | |||||||    
T  47129487 agagagacaccacactcttacccaaaaccttaaggca 47129451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 129; Significance: 1e-66; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 57 - 423
Target Start/End: Complemental strand, 13113163 - 13112794
Alignment:
Q  57 agtccggggagcacatggagcgataataggctaaacgtctaggaccttctaagagagagacaccacactcttacccaaaatcctaaggcatgaag--ttt 154  Q
    |||||||||||| | ||||||   ||| ||||||| ||||||||||| |||||||||||||||||  ||||||||||||||||||||  |||| |  |||    
T  13113163 agtccggggagcgcttggagcagcaatgggctaaatgtctaggacctgctaagagagagacaccaatctcttacccaaaatcctaag--atgatgggttt 13113066  T
Q  155 atgagtctcctcccttaaatattcaatgtttgctccatttcgagttgatgtgggacattatcactaacatttgatttccaacaatctccctctcaagtgt 254  Q
    ||| |||||||| |||| |||| |||||||||||| ||||| ||| ||||||||| ||||||||| ||  |||||||||||||||||||| |||||||||    
T  13113065 atgggtctcctctcttatatatccaatgtttgctctatttctagtcgatgtgggagattatcactcactcttgatttccaacaatctccccctcaagtgt 13112966  T
Q  255 gactcacccacatcactaggatgatccaaactatgatccaattcccactcccccagcaaacctaaccaggctctgatacc---ttgttgggg-agtctac 350  Q
    ||||||| || ||||||| || ||||||| ||  |||||   || |||| ||||||||| |||||  |||||||||||||   ||||||||| |||||      
T  13112965 gactcactcatatcactaagaagatccaa-ctgggatcccgctctcacttccccagcaagcctaagaaggctctgataccagtttgttgggggagtctgg 13112867  T
Q  351 gaagcgcttggagcggcaataggctaaacgtctaggacccactaagagagagacactacactcttacccaaaa 423  Q
    | |||||| | |||| |||| ||||||| ||||||||||| ||||||||||||||| ||| ||||||||||||    
T  13112866 ggagcgctggaagcgacaatgggctaaatgtctaggacccgctaagagagagacaccacattcttacccaaaa 13112794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 105 - 423
Target Start/End: Complemental strand, 13042662 - 13042346
Alignment:
Q  105 ctaagagagagacaccacactcttacccaaaatcctaaggcatgaagtttatgagtctcctcccttaaatattcaatgtttgctccatttcgagttgatg 204  Q
    ||||||||||||||||||||||||| |||||| | |||||||    ||||||| |||||||| |||| ||||  ||||||||||| ||||| ||| ||||    
T  13042662 ctaagagagagacaccacactcttatccaaaaccttaaggcaatgggtttatgggtctcctctcttatatatctaatgtttgctctatttctagtcgatg 13042563  T
Q  205 tgggacattatcactaacatttgatttccaacaatctccctctcaagtgtgactcacccacatcactaggatgatccaaactatgatccaattcccactc 304  Q
    ||||| ||||||||| ||| |||||||||||||| | |||||||||||||||||||||||||||||||||| |  ||| | |||||| | | ||||||||    
T  13042562 tgggatattatcactcacacttgatttccaacaa-ccccctctcaagtgtgactcacccacatcactaggaaggcccacaatatgattccactcccactc 13042464  T
Q  305 ccccagcaaacctaaccaggctctgataccttgttggggagtctacgaagcgcttggagcggcaataggctaaacgtctaggacccactaagagagagac 404  Q
    ||||| ||| ||||||||| |||  | | |  |||||||||  |  | ||||||||||||| |||| || |||||||||||||||| |||||||||||||    
T  13042463 ccccaacaagcctaaccagactcaaacatc-agttggggaggttggggagcgcttggagcgacaatgggttaaacgtctaggacccgctaagagagagac 13042365  T
Q  405 actacactcttacccaaaa 423  Q
    |  ||||||||||| ||||    
T  13042364 atcacactcttaccaaaaa 13042346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 57 - 423
Target Start/End: Complemental strand, 13043167 - 13042796
Alignment:
Q  57 agtccggggagcacatggagcgataataggctaaacgtctaggaccttctaagagagagacaccacactcttacccaaaatcctaaggcatgaag--ttt 154  Q
    |||||||||||| | ||||||   ||| ||||||| ||||||||||| |||||||||||||||||  ||||||||||||||||||||  |||| |  |||    
T  13043167 agtccggggagcgcttggagcagcaatgggctaaatgtctaggacctgctaagagagagacaccaatctcttacccaaaatcctaag--atgatgggttt 13043070  T
Q  155 atgagtctcctcccttaaatattcaatgtttgctccatttcgagttgatgtgggacattatcactaacatttgatttccaacaatctccctctcaagtgt 254  Q
    ||| |||||||| |||| |||| |||||||||||| ||||| ||| ||||||||| ||||||||| ||  |||||||||||||||||||| |||||||||    
T  13043069 atgggtctcctctcttatatatccaatgtttgctctatttctagtcgatgtgggagattatcactcactcttgatttccaacaatctccccctcaagtgt 13042970  T
Q  255 gactcacccacatcactaggatgatccaaactatgatccaattcccactcccccagcaaacctaaccaggctctgatacc---ttgtt-ggggagtctac 350  Q
    ||||||| || ||||||| || ||||| ||||  |||||    | |||| ||||||||| |||||  |||||||||||||   ||||| |||||||||      
T  13042969 gactcactcatatcactaagaagatcc-aactgggatcccgcactcacttccccagcaagcctaagaaggctctgataccagtttgttgggggagtctgg 13042871  T
Q  351 gaagcgcttggagcggcaataggctaaacgtctaggacccacta--agagagagacactacactcttacccaaaa 423  Q
    | |||| | | |||| |||| ||||||| |||||||| || |||  |||||||||||| ||| ||||||||||||    
T  13042870 ggagcgttggaagcgacaatgggctaaatgtctaggatccgctaagagagagagacaccacattcttacccaaaa 13042796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 105 - 423
Target Start/End: Complemental strand, 13112660 - 13112340
Alignment:
Q  105 ctaagagagagacaccacactcttacccaaaatcctaaggcatgaagtttatgagtctcctcccttaaatattcaatgtttgctccatttcgagttgatg 204  Q
    |||||||| |||||||||||||||| |||||| | |||| ||    ||||||| |||||||| |||| ||||  ||||||||||| ||||| ||| ||||    
T  13112660 ctaagagaaagacaccacactcttatccaaaaccttaagacaatgggtttatgggtctcctctcttatatatctaatgtttgctctatttctagtcgatg 13112561  T
Q  205 tgggacattatcactaacatttgatttccaacaatctccctctcaagtgtgactcacccacatcactaggatgatccaaactatgatccaattcccactc 304  Q
    ||||| ||||||||| ||| |||||||||||||| | ||||||||||||||||||| |||||||||||||| |  ||| | |||||| | | ||||||||    
T  13112560 tgggatattatcactcacacttgatttccaacaa-ccccctctcaagtgtgactcatccacatcactaggaaggcccacaatatgattccactcccactc 13112462  T
Q  305 ccccagcaaacctaaccaggctctgatacc---ttgttggggagtctacgaagcgcttggagcggcaataggctaaacgtctaggacccactaagagaga 401  Q
    ||||| ||| ||||||||| |||  ||| |   |||||||||||  |  | ||||||||||||| |||| || |||||||||||||||| ||||||||||    
T  13112461 ccccaacaagcctaaccagactcaaatatcagtttgttggggaggttggggagcgcttggagcgacaatgggttaaacgtctaggacccgctaagagaga 13112362  T
Q  402 gacactacactcttacccaaaa 423  Q
    ||||  ||||||||||| ||||    
T  13112361 gacatcacactcttaccaaaaa 13112340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 178 - 423
Target Start/End: Original strand, 36389102 - 36389346
Alignment:
Q  178 caatgtttgctccatttcgagttgatgtgggacattatcactaacatttgatttccaacaatctccctctcaagtgtgactcacccacatcactaggatg 277  Q
    |||||||||||||||||| |||||||||||||||||||||||  || |||||| ||||||| ||||| ||||||| |||||  ||||||||||||||| |    
T  36389102 caatgtttgctccatttctagttgatgtgggacattatcactcgcacttgattcccaacaaactccccctcaagtttgact--cccacatcactaggacg 36389199  T
Q  278 atccaaactatgatccaattcccactcccccagcaaacctaaccaggctctgatacc---ttgttggggagtctacgaagcgcttggagcggcaataggc 374  Q
    |||| ||||| ||| |   ||||||||||||||||| |||||  | | |||||||||   |||||| |||| ||    |||||||||||||||||| ||     
T  36389200 atcc-aactaggattccgctcccactcccccagcaagcctaattatgttctgataccagtttgttgaggagactgaagagcgcttggagcggcaat-ggt 36389297  T
Q  375 taaacgtctaggacccactaagagagagacactacactcttacccaaaa 423  Q
    |||||||| |||||||||||| |||||||||  ||||  ||||||||||    
T  36389298 taaacgtccaggacccactaaaagagagacatcacaccgttacccaaaa 36389346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 75 - 268
Target Start/End: Complemental strand, 13112855 - 13112670
Alignment:
Q  75 agcgataataggctaaacgtctaggaccttctaagagagagacaccacactcttacccaaaatcctaaggcatgaagtttatgagtctcctcccttaaat 174  Q
    ||||| ||| ||||||| ||||||||||  ||||||||||||||||||| |||||||||||| | |||||||        ||  |||| ||| |||| ||    
T  13112855 agcgacaatgggctaaatgtctaggacccgctaagagagagacaccacattcttacccaaaaccttaaggca--------ataggtcttctctcttatat 13112764  T
Q  175 attcaatgtttgctccatttcgagttgatgtgggacattatcactaacatttgatttccaacaatctccctctcaagtgtgactcacccacatc 268  Q
    ||  ||||||||||||||||| ||||||||||| |||| |||||| ||| ||||||||||||| || ||| |||||||||||||||||||||||    
T  13112763 atctaatgtttgctccatttctagttgatgtggcacataatcactcacacttgatttccaacagtccccccctcaagtgtgactcacccacatc 13112670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 108 - 268
Target Start/End: Complemental strand, 13042824 - 13042672
Alignment:
Q  108 agagagagacaccacactcttacccaaaatcctaaggcatgaagtttatgagtctcctcccttaaatattcaatgtttgctccatttcgagttgatgtgg 207  Q
    |||||||||||||||| |||||||||||| | |||||||        ||  |||| ||| |||| ||||  ||||||||||||||||| |||||||||||    
T  13042824 agagagagacaccacattcttacccaaaaccttaaggca--------ataggtcttctctcttatatatctaatgtttgctccatttctagttgatgtgg 13042733  T
Q  208 gacattatcactaacatttgatttccaacaatctccctctcaagtgtgactcacccacatc 268  Q
     |||| |||||| ||| ||||||||||||| || ||| |||||||||||||||||||||||    
T  13042732 cacataatcactcacacttgatttccaacagtccccccctcaagtgtgactcacccacatc 13042672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 181 - 287
Target Start/End: Complemental strand, 14168981 - 14168874
Alignment:
Q  181 tgtttgctccatttcgagttgatgtgggacattatcactaacatttgatt-tccaacaatctccctctcaagtgtgactcacccacatcactaggatgat 279  Q
    ||||| ||||||| | ||| |||||||||||| ||| || ||| |||||| |||||||||||||| ||||||| ||| ||| |||||||||||| |||||    
T  14168981 tgtttcctccattcctagtcgatgtgggacataatcccttacacttgattatccaacaatctccccctcaagtatgaatcatccacatcactagcatgat 14168882  T
Q  280 ccaaacta 287  Q
    ||| ||||    
T  14168881 ccacacta 14168874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 202 - 293
Target Start/End: Complemental strand, 41341482 - 41341390
Alignment:
Q  202 atgtgggacattatcactaacatttgatttcc-aacaatctccctctcaagtgtgactcacccacatcactaggatgatccaaactatgatcc 293  Q
    ||||||||||| |||||| ||| |||||| || || |||||||| ||||||||||| ||||||||||||||||  ||||||| |||| |||||    
T  41341482 atgtgggacataatcactcacacttgattacccaataatctccccctcaagtgtgaatcacccacatcactagcctgatccacactaggatcc 41341390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 62 - 136
Target Start/End: Complemental strand, 13042420 - 13042346
Alignment:
Q  62 ggggagcacatggagcgataataggctaaacgtctaggaccttctaagagagagacaccacactcttacccaaaa 136  Q
    ||||||| | |||||||| ||| || |||||||||||||||  |||||||||||||| |||||||||||| ||||    
T  13042420 ggggagcgcttggagcgacaatgggttaaacgtctaggacccgctaagagagagacatcacactcttaccaaaaa 13042346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 62 - 136
Target Start/End: Complemental strand, 13112414 - 13112340
Alignment:
Q  62 ggggagcacatggagcgataataggctaaacgtctaggaccttctaagagagagacaccacactcttacccaaaa 136  Q
    ||||||| | |||||||| ||| || |||||||||||||||  |||||||||||||| |||||||||||| ||||    
T  13112414 ggggagcgcttggagcgacaatgggttaaacgtctaggacccgctaagagagagacatcacactcttaccaaaaa 13112340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 86 - 166
Target Start/End: Original strand, 36388992 - 36389072
Alignment:
Q  86 gctaaacgtctaggaccttctaagagagagacaccacactcttacccaaaatcctaaggcatgaagtttatgagtctcctc 166  Q
    |||||| ||||| ||||  |||||||||| |||||||||||| |||||||| |||||||||   |||||||| ||||||||    
T  36388992 gctaaatgtctaagaccagctaagagagaaacaccacactctgacccaaaaccctaaggcactgagtttatgggtctcctc 36389072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 112 - 161
Target Start/End: Original strand, 42405638 - 42405687
Alignment:
Q  112 agagacaccacactcttacccaaaatcctaaggcatgaagtttatgagtc 161  Q
    ||||||||||||||||||||||||| | |||||||| | |||||||||||    
T  42405638 agagacaccacactcttacccaaaaccttaaggcattaggtttatgagtc 42405687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 110 - 146
Target Start/End: Original strand, 9498694 - 9498730
Alignment:
Q  110 agagagacaccacactcttacccaaaatcctaaggca 146  Q
    ||||||||||||||||||||||||||||| |||||||    
T  9498694 agagagacaccacactcttacccaaaatcttaaggca 9498730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 110 - 157
Target Start/End: Complemental strand, 25328053 - 25328006
Alignment:
Q  110 agagagacaccacactcttacccaaaatcctaaggcatgaagtttatg 157  Q
    ||||||||||||||||||||||||||| | |||||||| | |||||||    
T  25328053 agagagacaccacactcttacccaaaaccttaaggcattaggtttatg 25328006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 146
Target Start/End: Original strand, 26074185 - 26074222
Alignment:
Q  109 gagagagacaccacactcttacccaaaatcctaaggca 146  Q
    |||||||||||||||||||||||||||| | |||||||    
T  26074185 gagagagacaccacactcttacccaaaaccttaaggca 26074222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 146
Target Start/End: Complemental strand, 26074731 - 26074694
Alignment:
Q  109 gagagagacaccacactcttacccaaaatcctaaggca 146  Q
    |||||||||||||||||||||||||||| | |||||||    
T  26074731 gagagagacaccacactcttacccaaaaccttaaggca 26074694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 147
Target Start/End: Complemental strand, 41632900 - 41632863
Alignment:
Q  110 agagagacaccacactcttacccaaaatcctaaggcat 147  Q
    ||||||||||||||||||||||||||||| ||| ||||    
T  41632900 agagagacaccacactcttacccaaaatcttaaagcat 41632863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 110 - 146
Target Start/End: Complemental strand, 301069 - 301033
Alignment:
Q  110 agagagacaccacactcttacccaaaatcctaaggca 146  Q
    |||||||||||||||||||||| |||||| |||||||    
T  301069 agagagacaccacactcttaccaaaaatcttaaggca 301033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 110 - 146
Target Start/End: Complemental strand, 6500568 - 6500532
Alignment:
Q  110 agagagacaccacactcttacccaaaatcctaaggca 146  Q
    ||||||||||||||||||||||||||| | |||||||    
T  6500568 agagagacaccacactcttacccaaaaccttaaggca 6500532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 110 - 146
Target Start/End: Complemental strand, 33747889 - 33747853
Alignment:
Q  110 agagagacaccacactcttacccaaaatcctaaggca 146  Q
    |||||||||||||||||||| |||||||| |||||||    
T  33747889 agagagacaccacactcttatccaaaatcttaaggca 33747853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 109; Significance: 1e-54; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 110 - 423
Target Start/End: Original strand, 11637761 - 11638079
Alignment:
Q  110 agagagacaccacactcttacccaaaatcctaaggcatgaagtttatgagtctcctcccttaaatattcaatgtttgctccatttcgagttgatgtggga 209  Q
    |||||||||||||||||||| |||||||| |||| ||    ||||||| || ||||| |||| |||||||||||||||| || ||| ||| ||||| |||    
T  11637761 agagagacaccacactcttatccaaaatcttaagacaatgggtttatgggtatcctctcttatatattcaatgtttgcttcacttctagtcgatgttgga 11637860  T
Q  210 cattatcactaacatttgatttccaacaatctccctctcaagtgtgactcacccacatcactaggatgatccaaactatgatccaattcccact-ccccc 308  Q
    |||||||||| ||| ||||||| ||||||||| || ||||||||||||||| |||||| ||||| |||||||| |  | ||||| | || |||| |||||    
T  11637861 cattatcactcacacttgattttcaacaatcttcccctcaagtgtgactcaaccacatgactagaatgatccacataaggatcccactctcactcccccc 11637960  T
Q  309 agcaaacctaaccaggctctgatacc---ttgttggggagtctacgaagcgctt-ggagcggcaataggctaaacgtctaggacccactaagagagagac 404  Q
    | ||| ||||| ||||||||||||||   || |||||||||||  | ||||||| ||||||| ||| || |||||||||||||||| | |||||||||||    
T  11637961 aacaagcctaatcaggctctgatacctgtttcttggggagtcttgggagcgcttgggagcggtaatgggttaaacgtctaggacccgcaaagagagagac 11638060  T
Q  405 actacactcttacccaaaa 423  Q
    || | ||||||||||||||    
T  11638061 accatactcttacccaaaa 11638079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 168 - 333
Target Start/End: Original strand, 7301398 - 7301564
Alignment:
Q  168 cttaaatattcaatgtttgctccatttcgagttgatgtgggacattatcactaacatttgatttccaacaatctccctctcaagtgtgactcacccacat 267  Q
    |||| |||| ||| |||| ||||||||| ||| |||||||||||| |||||| ||| || |||| ||||||| |||  ||||| ||||||||||||||||    
T  7301398 cttatatatccaacgtttcctccatttctagtcgatgtgggacataatcactcacacttaattttcaacaatatcctcctcaactgtgactcacccacat 7301497  T
Q  268 cactaggatgatccaaactatgatccaattcccactcccccagcaaacctaacca-ggctctgatac 333  Q
    ||||||  ||||||| | || |||||   ||||||||||||| | | |||||||| |||||||||||    
T  7301498 cactagcctgatccacattaggatcccgctcccactcccccatcgagcctaaccatggctctgatac 7301564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 73 - 146
Target Start/End: Original strand, 11638016 - 11638089
Alignment:
Q  73 ggagcgataataggctaaacgtctaggaccttctaagagagagacaccacactcttacccaaaatcctaaggca 146  Q
    |||||| |||| || |||||||||||||||  | ||||||||||||||| ||||||||||||||||||||||||    
T  11638016 ggagcggtaatgggttaaacgtctaggacccgcaaagagagagacaccatactcttacccaaaatcctaaggca 11638089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 231 - 423
Target Start/End: Complemental strand, 15092347 - 15092151
Alignment:
Q  231 tccaacaatctccctctcaagtgtgactcacccacatcactaggatgatccaaactatgatccaattcccactcccccagcaaacct-aacca-ggctct 328  Q
    ||||||||||| || ||||||||||| ||||| |||| |||||  ||||||| |||| ||||| | |||| |||||  | | | ||| ||||| ||||||    
T  15092347 tccaacaatcttcccctcaagtgtgagtcaccaacattactagtctgatccacactaggatcccactcccgctcccgtaccgagccttaaccatggctct 15092248  T
Q  329 gatacc--ttgttggggagtctacgaagcgcttggagcggcaataggctaaacgtctaggacccactaagagagagacactacactcttacccaaaa 423  Q
    ||||||  ||||||||||||||   ||||||| ||||||||| | | |||||| || || |||| ||||||||||||||  ||||| ||||| ||||    
T  15092247 gataccagttgttggggagtctggaaagcgctaggagcggcagtggactaaacatcaagaacccgctaagagagagacatcacactattacctaaaa 15092151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 110 - 161
Target Start/End: Complemental strand, 8482044 - 8481993
Alignment:
Q  110 agagagacaccacactcttacccaaaatcctaaggcatgaagtttatgagtc 161  Q
    ||||||||||||||||||||||||||||| |||||||   ||||||||||||    
T  8482044 agagagacaccacactcttacccaaaatcttaaggcaatgagtttatgagtc 8481993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 143
Target Start/End: Original strand, 10073655 - 10073689
Alignment:
Q  109 gagagagacaccacactcttacccaaaatcctaag 143  Q
    |||||||||||||||||||||||||||||| ||||    
T  10073655 gagagagacaccacactcttacccaaaatcttaag 10073689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 146
Target Start/End: Original strand, 10074402 - 10074439
Alignment:
Q  109 gagagagacaccacactcttacccaaaatcctaaggca 146  Q
    |||||||||||||||||||||||||||| | |||||||    
T  10074402 gagagagacaccacactcttacccaaaaccttaaggca 10074439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 138
Target Start/End: Original strand, 10902469 - 10902498
Alignment:
Q  109 gagagagacaccacactcttacccaaaatc 138  Q
    ||||||||||||||||||||||||||||||    
T  10902469 gagagagacaccacactcttacccaaaatc 10902498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 110 - 146
Target Start/End: Complemental strand, 3058344 - 3058308
Alignment:
Q  110 agagagacaccacactcttacccaaaatcctaaggca 146  Q
    ||||||||||||||||||||||||||| | |||||||    
T  3058344 agagagacaccacactcttacccaaaaccttaaggca 3058308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 110 - 146
Target Start/End: Complemental strand, 3409377 - 3409341
Alignment:
Q  110 agagagacaccacactcttacccaaaatcctaaggca 146  Q
    ||||||||||||||||||||||||||| | |||||||    
T  3409377 agagagacaccacactcttacccaaaaccttaaggca 3409341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 110 - 146
Target Start/End: Complemental strand, 16107796 - 16107760
Alignment:
Q  110 agagagacaccacactcttacccaaaatcctaaggca 146  Q
    ||||||||||||||||||||||||||| | |||||||    
T  16107796 agagagacaccacactcttacccaaaaccttaaggca 16107760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 94; Significance: 1e-45; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 116 - 334
Target Start/End: Complemental strand, 16143550 - 16143330
Alignment:
Q  116 acaccacactcttacccaaaatcctaaggcatgaagtttatgagtctcctcccttaaatattcaatgtttgctccatttcgagttgatgtgggacattat 215  Q
    |||| ||||||||||||||||   |||||||   || ||||| ||||| || |||| |||| |||  ||||||||||||| ||  ||||||| |||||||    
T  16143550 acactacactcttacccaaaactttaaggcaatgagcttatgggtctcgtctcttatatatccaacatttgctccatttctagcagatgtggaacattat 16143451  T
Q  216 cactaacatttgatttccaacaatctccctctcaagtgtgactcacccacatcactaggatgatccaaactatgatccaattcccactccc--ccagcaa 313  Q
    |||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||  ||||   ||||||||||  |||||||    
T  16143450 cactcacacttgatttccaacaatctccccctcaagtgtgactcacccacatcactaggatgatccacactagaatcccgctcccactcccgtccagcaa 16143351  T
Q  314 acctaaccaggctctgatacc 334  Q
     ||||||||||||||||||||    
T  16143350 gcctaaccaggctctgatacc 16143330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 154 - 345
Target Start/End: Original strand, 40195904 - 40196099
Alignment:
Q  154 tatgagtctcctcccttaaatattcaatgtttgctccatttcgagttgatgtgggacattatcactaacatttgatttcc-aacaatctccctctcaagt 252  Q
    |||| |||||||| |||| |||| ||| |||| ||||||| | ||| ||||||  |||| |||||| ||| ||||||||| ||||||||||| |||||||    
T  40195904 tatgggtctcctctcttatatatccaacgtttcctccattcctagtcgatgtgaaacataatcactcacacttgatttcccaacaatctccccctcaagt 40196003  T
Q  253 gtgactcacccacatcactaggatgatccaaactatgatccaattcccactcccccagcaaacctaaccag-gctctgatacc--ttgttggggag 345  Q
    |||| ||||||||||||||||  ||||||| |||| |||||   |||| || ||||| ||| ||||||||| |||||||||||  |||||||||||    
T  40196004 gtgagtcacccacatcactagcctgatccacactaggatcccgctcccgctaccccaccaagcctaaccagagctctgataccagttgttggggag 40196099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 129 - 287
Target Start/End: Original strand, 43978634 - 43978792
Alignment:
Q  129 acccaaaatcctaaggcatgaagtttatgagtctcctcccttaaatattcaatgtttgctccatttcgagttgatgtgggacattatcactaacatttga 228  Q
    |||||||| | |||||||  | || ||||||||||||| |||| |||| |||||||| ||||||| | ||| |||||||||||| |||||| ||| ||||    
T  43978634 acccaaaaccttaaggcaataggtatatgagtctcctctcttatatatccaatgtttcctccattcctagtcgatgtgggacataatcactcacacttga 43978733  T
Q  229 -tttccaacaatctccctctcaagtgtgactcacccacatcactaggatgatccaaacta 287  Q
     |||||||||||||||| ||||||||||| ||| ||||||||||||  ||||||| ||||    
T  43978734 ttttccaacaatctccccctcaagtgtgaatca-ccacatcactagtttgatccacacta 43978792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 87 - 237
Target Start/End: Original strand, 48127832 - 48127982
Alignment:
Q  87 ctaaacgtctaggaccttctaagagagagacaccacactcttacccaaaatcctaaggcatgaagtttatgagtctcctcccttaaatattcaatgtttg 186  Q
    |||||||||||||||| ||||||||| |||||||||||||||| ||||||   ||| |||    ||||||| |||||||| |||| ||||  || ||||     
T  48127832 ctaaacgtctaggaccatctaagagaaagacaccacactcttatccaaaacattaaagcaatgggtttatgggtctcctctcttatatatcaaacgtttc 48127931  T
Q  187 ctccatttcgagttgatgtgggacattatcactaacatttgatttccaaca 237  Q
    | ||||||  |||||||||| ||||| |||||| |||||||||||||||||    
T  48127932 caccatttatagttgatgtgtgacataatcactcacatttgatttccaaca 48127982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 129 - 280
Target Start/End: Complemental strand, 32201138 - 32200987
Alignment:
Q  129 acccaaaatcctaaggcatgaagtttatgagtctcctcccttaaatattcaatgtttgctccatttcgagttgatgtgggacattatcactaacatttga 228  Q
    |||||||||| |||||||| |||| |||  |||||||| |||  ||||  ||  ||| || |||||  ||| |||||| ||||| |||||| ||||||||    
T  32201138 acccaaaatcttaaggcatcaagtatatatgtctcctctcttgtatatcaaacatttccttcatttttagtcgatgtgagacataatcactcacatttga 32201039  T
Q  229 tttccaacaatctccctctcaagtgtgactcacccacatcactaggatgatc 280  Q
    || ||||||||||||| || ||| ||||||||||||||||||||| ||||||    
T  32201038 ttcccaacaatctcccccttaagcgtgactcacccacatcactagcatgatc 32200987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 112 - 287
Target Start/End: Original strand, 54017590 - 54017766
Alignment:
Q  112 agagacaccacactcttacccaaaatcctaaggcatgaagtttatgagtctcctcccttaaatattcaatgtttgctccatttcgagttgatgtgggaca 211  Q
    ||||||||||||||||||||||||| | |||||||    |||||||  |  |||| |||| |||| |  |||||  |||||| | ||| |||||| ||||    
T  54017590 agagacaccacactcttacccaaaaccttaaggcaatgggtttatggattccctctcttatatatcctttgtttcttccattcctagtcgatgtgagaca 54017689  T
Q  212 ttatcactaacatttgatttcc-aacaatctccctctcaagtgtgactcacccacatcactaggatgatccaaacta 287  Q
    | |||||| ||| |||||| || ||||||||||| ||||||||||| ||||||||||||||||  ||||||| ||||    
T  54017690 taatcactcacacttgattacccaacaatctccccctcaagtgtgaatcacccacatcactagcctgatccacacta 54017766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 116 - 283
Target Start/End: Original strand, 17731950 - 17732118
Alignment:
Q  116 acaccacactcttacccaaaatcctaaggcatgaagtttatgagtctcctcccttaaatattcaatgtttgctccatttcgagttgatgtgggacattat 215  Q
    ||||||||||||||| ||||| | |||||||    ||||||| ||  |||  |||| |||| |  ||||| ||||||| | ||| |||||||||||| ||    
T  17731950 acaccacactcttactcaaaaccttaaggcaatgggtttatgggttccctttcttatatatcctttgtttcctccattcctagtcgatgtgggacataat 17732049  T
Q  216 cactaacatttgatt-tccaacaatctccctctcaagtgtgactcacccacatcactaggatgatccaa 283  Q
    |||| ||| |||||| |||||||| ||||| ||||||||||| ||| ||||||||||||  ||||||||    
T  17732050 cactcacacttgattatccaacaacctcccactcaagtgtgaatcatccacatcactagcctgatccaa 17732118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 116 - 283
Target Start/End: Original strand, 19033181 - 19033349
Alignment:
Q  116 acaccacactcttacccaaaatcctaaggcatgaagtttatgagtctcctcccttaaatattcaatgtttgctccatttcgagttgatgtgggacattat 215  Q
    ||||||||||||||| ||||| | |||||||    ||||||| ||  |||  |||| |||| |  ||||| ||||||| | ||| |||||||||||| ||    
T  19033181 acaccacactcttactcaaaaccttaaggcaatgggtttatgggttccctttcttatatatcctttgtttcctccattcctagtcgatgtgggacataat 19033280  T
Q  216 cactaacatttgatt-tccaacaatctccctctcaagtgtgactcacccacatcactaggatgatccaa 283  Q
    |||| ||| |||||| |||||||| ||||| ||||||||||| ||| ||||||||||||  ||||||||    
T  19033281 cactcacacttgattatccaacaacctcccactcaagtgtgaatcatccacatcactagcctgatccaa 19033349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 109 - 238
Target Start/End: Complemental strand, 53596079 - 53595950
Alignment:
Q  109 gagagagacaccacactcttacccaaaatcctaaggcatgaagtttatgagtctcctcccttaaatattcaatgtttgctccatttcgagttgatgtggg 208  Q
    |||||||||||||||||||||||||||| | ||||| |    ||||||| |||||||| |||| |||| |||  ||| ||| ||||| |||  |||||||    
T  53596079 gagagagacaccacactcttacccaaaaccttaaggtaacgggtttatgggtctcctctcttatatatccaacattttctctatttctagtcaatgtggg 53595980  T
Q  209 acattatcactaacatttgatttccaacaa 238  Q
    |||| ||||||  || ||||||||||||||    
T  53595979 acataatcactcgcacttgatttccaacaa 53595950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 109 - 238
Target Start/End: Complemental strand, 53596394 - 53596265
Alignment:
Q  109 gagagagacaccacactcttacccaaaatcctaaggcatgaagtttatgagtctcctcccttaaatattcaatgtttgctccatttcgagttgatgtggg 208  Q
    |||||||||||||||||||||||||||| | ||||| |    ||||||| |||||||| |||| |||| |||  ||| ||| ||||| |||  |||||||    
T  53596394 gagagagacaccacactcttacccaaaaccttaaggtaacgggtttatgggtctcctctcttatatatccaacattttctctatttctagtcaatgtggg 53596295  T
Q  209 acattatcactaacatttgatttccaacaa 238  Q
    |||| ||||||  || ||||||||||||||    
T  53596294 acataatcactcgcacttgatttccaacaa 53596265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 225 - 273
Target Start/End: Complemental strand, 32201326 - 32201278
Alignment:
Q  225 ttgatttccaacaatctccctctcaagtgtgactcacccacatcactag 273  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||||||    
T  32201326 ttgatttctaacaatctccccctcaagtgtgactcacccacatcactag 32201278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 86 - 143
Target Start/End: Complemental strand, 53596617 - 53596560
Alignment:
Q  86 gctaaacgtctaggaccttctaagagagagacaccacactcttacccaaaatcctaag 143  Q
    |||||||||||||||||  ||| ||||||||||||||||||||||| |||||| ||||    
T  53596617 gctaaacgtctaggacccgctatgagagagacaccacactcttacctaaaatcttaag 53596560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 332 - 399
Target Start/End: Original strand, 43978548 - 43978615
Alignment:
Q  332 accttgttggggagtctacgaagcgcttggagcggcaataggctaaacgtctaggacccactaagaga 399  Q
    ||||||||| |||||||  | |||||||||||||||||| || ||||||||||||||||  |||||||    
T  43978548 accttgttgtggagtctggggagcgcttggagcggcaatgggttaaacgtctaggacccgttaagaga 43978615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 360 - 423
Target Start/End: Original strand, 48127605 - 48127668
Alignment:
Q  360 ggagcggcaataggctaaacgtctaggacccactaagagagagacactacactcttacccaaaa 423  Q
    |||| |||||| || ||||||||||||| ||| |||||||||||||| |||| |||||||||||    
T  48127605 ggagtggcaatgggttaaacgtctaggatccattaagagagagacaccacacacttacccaaaa 48127668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 205 - 292
Target Start/End: Original strand, 16869647 - 16869736
Alignment:
Q  205 tgggacattatcactaacatttgatttcc--aacaatctccctctcaagtgtgactcacccacatcactaggatgatccaaactatgatc 292  Q
    |||||||| |||||| ||| |||||| ||  |||| |||||  ||||||||||| |||||||||||||||| |||||||| |||| ||||    
T  16869647 tgggacataatcactcacacttgattaccctaacattctcctcctcaagtgtgaatcacccacatcactagcatgatccacactaggatc 16869736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 361 - 423
Target Start/End: Original strand, 48127819 - 48127881
Alignment:
Q  361 gagcggcaataggctaaacgtctaggacccactaagagagagacactacactcttacccaaaa 423  Q
    |||||||||| | ||||||||||||||||  |||||||| |||||| ||||||||| ||||||    
T  48127819 gagcggcaatggactaaacgtctaggaccatctaagagaaagacaccacactcttatccaaaa 48127881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 373 - 423
Target Start/End: Complemental strand, 53596617 - 53596567
Alignment:
Q  373 gctaaacgtctaggacccactaagagagagacactacactcttacccaaaa 423  Q
    |||||||||||||||||| ||| ||||||||||| ||||||||||| ||||    
T  53596617 gctaaacgtctaggacccgctatgagagagacaccacactcttacctaaaa 53596567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 109 - 157
Target Start/End: Complemental strand, 8328023 - 8327975
Alignment:
Q  109 gagagagacaccacactcttacccaaaatcctaaggcatgaagtttatg 157  Q
    |||||||||||||||||||||||||||| | |||||||| | |||||||    
T  8328023 gagagagacaccacactcttacccaaaaccttaaggcattacgtttatg 8327975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 88 - 144
Target Start/End: Original strand, 48127620 - 48127676
Alignment:
Q  88 taaacgtctaggaccttctaagagagagacaccacactcttacccaaaatcctaagg 144  Q
    ||||||||||||| |   ||||||||||||||||||| ||||||||||||| |||||    
T  48127620 taaacgtctaggatccattaagagagagacaccacacacttacccaaaatcttaagg 48127676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 110 - 161
Target Start/End: Original strand, 37990679 - 37990730
Alignment:
Q  110 agagagacaccacactcttacccaaaatcctaaggcatgaagtttatgagtc 161  Q
    ||||||||||||||||||||||||||| | |||||||   ||||||||||||    
T  37990679 agagagacaccacactcttacccaaaaccttaaggcaatgagtttatgagtc 37990730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 110 - 161
Target Start/End: Original strand, 54017856 - 54017907
Alignment:
Q  110 agagagacaccacactcttacccaaaatcctaaggcatgaagtttatgagtc 161  Q
    ||||||||||||||||||||||||||| | |||||| | | |||||||||||    
T  54017856 agagagacaccacactcttacccaaaaccttaaggcgttaggtttatgagtc 54017907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 154 - 287
Target Start/End: Complemental strand, 23162259 - 23162126
Alignment:
Q  154 tatgagtctcctcccttaaatattcaatgtttgctccatttcgagttgatgtgggacattatcactaacatttgatttc-caacaatctccctctcaagt 252  Q
    |||||||| |||| |||| || | ||| |||| ||||||| | | | |||||||||||| |||||| ||| || ||||| || ||||| ||| |||||||    
T  23162259 tatgagtcccctctcttatatgtccaacgtttcctccattcctaatcgatgtgggacataatcactcacactttatttctcaccaatccccc-ctcaagt 23162161  T
Q  253 gtgactcacccacatcactaggatgatccaaacta 287  Q
    |||| |||||||||| |||||  ||||||| ||||    
T  23162160 gtgagtcacccacattactagcctgatccacacta 23162126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 162
Target Start/End: Original strand, 39336009 - 39336062
Alignment:
Q  109 gagagagacaccacactcttacccaaaatcctaaggcatgaagtttatgagtct 162  Q
    |||||||||||||||||||||||||||| | |||||||   | |||||||||||    
T  39336009 gagagagacaccacactcttacccaaaaccttaaggcaatgattttatgagtct 39336062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 146
Target Start/End: Original strand, 47964954 - 47964991
Alignment:
Q  109 gagagagacaccacactcttacccaaaatcctaaggca 146  Q
    ||||||||| |||||||||||||||||||| |||||||    
T  47964954 gagagagacgccacactcttacccaaaatcttaaggca 47964991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 146
Target Start/End: Original strand, 53118014 - 53118051
Alignment:
Q  109 gagagagacaccacactcttacccaaaatcctaaggca 146  Q
    ||||||||||| |||||||||||||||||| |||||||    
T  53118014 gagagagacactacactcttacccaaaatcttaaggca 53118051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 114 - 146
Target Start/End: Complemental strand, 4823769 - 4823737
Alignment:
Q  114 agacaccacactcttacccaaaatcctaaggca 146  Q
    ||||||||||||||||||||||||| |||||||    
T  4823769 agacaccacactcttacccaaaatcttaaggca 4823737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 109 - 145
Target Start/End: Complemental strand, 11661639 - 11661603
Alignment:
Q  109 gagagagacaccacactcttacccaaaatcctaaggc 145  Q
    |||||||||||||||||||||||||||| | ||||||    
T  11661639 gagagagacaccacactcttacccaaaaccttaaggc 11661603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 353 - 423
Target Start/End: Complemental strand, 16143597 - 16143530
Alignment:
Q  353 agcgcttggagcggcaataggctaaacgtctaggacccactaagagagagacactacactcttacccaaaa 423  Q
    |||||||||||||||||| |  ||||| | ||||||||  |||||||   |||||||||||||||||||||    
T  16143597 agcgcttggagcggcaatggattaaacatttaggacccgttaagaga---acactacactcttacccaaaa 16143530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 110 - 146
Target Start/End: Complemental strand, 22304687 - 22304651
Alignment:
Q  110 agagagacaccacactcttacccaaaatcctaaggca 146  Q
    ||||||||||||||||||||||||||| | |||||||    
T  22304687 agagagacaccacactcttacccaaaaccttaaggca 22304651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 109 - 157
Target Start/End: Complemental strand, 39914371 - 39914323
Alignment:
Q  109 gagagagacaccacactcttacccaaaatcctaaggcatgaagtttatg 157  Q
    ||||||||||||||||||||| |||||||  |||||||| | |||||||    
T  39914371 gagagagacaccacactcttatccaaaatattaaggcattaggtttatg 39914323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 110 - 146
Target Start/End: Original strand, 43346831 - 43346867
Alignment:
Q  110 agagagacaccacactcttacccaaaatcctaaggca 146  Q
    ||||||||||||||||||||||||||| | |||||||    
T  43346831 agagagacaccacactcttacccaaaaccttaaggca 43346867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 91; Significance: 7e-44; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 85 - 405
Target Start/End: Original strand, 31973350 - 31973674
Alignment:
Q  85 ggctaaacgtctaggaccttctaagagagagacaccacactcttacccaaaatcctaaggcatgaagtttatgagtctcctcccttaaatattcaatgtt 184  Q
    |||||||||||||| | |  |||||||||||||| ||||||||||||||||||| ||||||||   || |||| || ||||| |||| ||||  || | |    
T  31973350 ggctaaacgtctagaatccgctaagagagagacatcacactcttacccaaaatcttaaggcatcgggtatatgtgtatcctctcttatatatgtaacggt 31973449  T
Q  185 tgctccatttcgagttgatgtgggacattatcactaacatttgatttccaacaatctccctctcaagtgtgactcacccacatcactaggatgatccaaa 284  Q
    | ||||||||| ||| | |||| ||||| |||||| ||| |||||||||||||||||||| |||||||||||||||| |||||||||||  ||||||| |    
T  31973450 tcctccatttctagtcggtgtgagacataatcactcacacttgatttccaacaatctccccctcaagtgtgactcactcacatcactagtctgatccaca 31973549  T
Q  285 ctatgatccaattcccactcccccagcaaacctaacc-aggctctgatacc---ttgttggggagtctacgaagcgcttggagcggcaataggctaaacg 380  Q
    ||| |||||   ||||||||| ||| | | ||||||| ||||| |||||||   |||||||||| | |    || | | ||| || |||||||||||| |    
T  31973550 ctaggatcccgctcccactcctccatcgagcctaaccaaggctttgataccaatttgttggggattttggtgagtgttgggaacgacaataggctaaatg 31973649  T
Q  381 tctaggacccactaagagagagaca 405  Q
    |||||||||| ||||||||||||||    
T  31973650 tctaggacccgctaagagagagaca 31973674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 191 - 423
Target Start/End: Original strand, 34665930 - 34666166
Alignment:
Q  191 atttcgagttgatgtgggacattatcactaacatttgatttccaacaatctccctctcaagtgtgactcacccacatcactaggatgatccaaactatga 290  Q
    ||||| ||| ||||||||| || |||||| |||  ||||||||||||||||| | ||||||||||| | || |||||||||||  ||||||| |||| ||    
T  34665930 atttctagtcgatgtgggatataatcactcacacatgatttccaacaatctctccctcaagtgtgatttactcacatcactagtgtgatccacactagga 34666029  T
Q  291 tccaattcccactcccccagcaaacctaaccagg-ctctgatacc---ttgttggggagtctacgaagcgcttggagcggcaataggctaaacgtctagg 386  Q
    |||   ||||||  ||||||| | |||||||||| ||||||||||   ||||||||||||||  |||| |||  ||| |||||| |  |||||||| | |    
T  34666030 tcccgctcccaccaccccagcgagcctaaccaggactctgataccagtttgttggggagtctcagaagtgctgtgaggggcaatggagtaaacgtccaag 34666129  T
Q  387 acccactaagagagagacactacactcttacccaaaa 423  Q
    ||||  ||||||| |||||| ||||| ||||||||||    
T  34666130 acccgttaagagaaagacaccacacttttacccaaaa 34666166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 88 - 244
Target Start/End: Complemental strand, 12466423 - 12466267
Alignment:
Q  88 taaacgtctaggaccttctaagagagagacaccacactcttacccaaaatcctaaggcatgaagtttatgagtctcctcccttaaatattcaatgtttgc 187  Q
    |||| |||||||||||  |||||||||||||||||||||||||| |||| | |||||||| |||| |||  | |  ||| | || |||| ||| |||| |    
T  12466423 taaatgtctaggacctgttaagagagagacaccacactcttaccaaaaaccttaaggcattaagtatataggcccactctcgtatatatccaacgttttc 12466324  T
Q  188 tccatttcgagttgatgtgggacattatcactaacatttgatttccaacaatctccc 244  Q
    |||||||| |||||||||||||||| |||||| ||| |||||||| |||||| ||||    
T  12466323 tccatttctagttgatgtgggacataatcacttacacttgatttctaacaatatccc 12466267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 191 - 423
Target Start/End: Original strand, 47159103 - 47159337
Alignment:
Q  191 atttcgagttgatgtgggacattatcactaacatttgatttccaacaatctccctctcaagtgtgactcacccacatcactaggatgatccaaactatga 290  Q
    ||||| ||| |||||| || || |||||| ||  || |||||||||||||| ||| | |||||||||||| ||||||||||||||||||||| |||| ||    
T  47159103 atttccagtcgatgtgagatataatcacttacgattaatttccaacaatcttccttttaagtgtgactcatccacatcactaggatgatccacactagga 47159202  T
Q  291 tccaattcccactcccccagcaaacctaaccagg-ctctgatacc---ttgttggggagtctacgaagcgcttggagcggcaataggctaaacgtctagg 386  Q
    ||| | || ||||| | || | | |||||||||| ||||||||||   |||||||| |||||  ||| || |  ||||||||||  |||||| || ||||    
T  47159203 tcccactcacactctctcatcgagcctaaccaggactctgataccaatttgttgggaagtctgagaatcgttgtgagcggcaatgagctaaatgtttagg 47159302  T
Q  387 acccactaagagagagacactacactcttacccaaaa 423  Q
    | |   ||  |||||||||| ||||||||||||||||    
T  47159303 atctgtta--agagagacaccacactcttacccaaaa 47159337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 110 - 161
Target Start/End: Complemental strand, 11977062 - 11977011
Alignment:
Q  110 agagagacaccacactcttacccaaaatcctaaggcatgaagtttatgagtc 161  Q
    ||||||||||||||||||||||||||| | |||||||| | |||||||||||    
T  11977062 agagagacaccacactcttacccaaaaccttaaggcattaggtttatgagtc 11977011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 152 - 237
Target Start/End: Complemental strand, 26231596 - 26231511
Alignment:
Q  152 tttatgagtctcctcccttaaatattcaatgtttgctccatttcgagttgatgtgggacattatcactaacatttgatttccaaca 237  Q
    |||||| | |||||| ||||||||| ||| |||| ||||||||  ||||||||||  | ||||||||||||| |||| ||||||||    
T  26231596 tttatgggcctcctctcttaaatatccaacgtttcctccatttttagttgatgtgaaatattatcactaacacttgagttccaaca 26231511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 81 - 237
Target Start/End: Original strand, 31973637 - 31973793
Alignment:
Q  81 aataggctaaacgtctaggaccttctaagagagagacaccacactcttacccaaaatcct-aaggcatgaagtttatgagtctcctcccttaaatattca 179  Q
    ||||||||||| ||||||||||  |||||||||||||| |||| |||| ||| ||| | | ||| ||  |  ||||||||||||||| |||| || ||||    
T  31973637 aataggctaaatgtctaggacccgctaagagagagacaacaca-tcttgccccaaaactttaagacaatagatttatgagtctcctctcttatattttca 31973735  T
Q  180 atgtttgctccatttcgagttgatgtgggacattatcactaacatttgatttccaaca 237  Q
    |||||| || |||||  ||| ||| | |||||| |||||  ||| |||||||||||||    
T  31973736 atgtttccttcatttttagtcgatatcggacataatcacgcacacttgatttccaaca 31973793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 372 - 423
Target Start/End: Original strand, 31973350 - 31973401
Alignment:
Q  372 ggctaaacgtctaggacccactaagagagagacactacactcttacccaaaa 423  Q
    |||||||||||||| | || ||||||||||||||  ||||||||||||||||    
T  31973350 ggctaaacgtctagaatccgctaagagagagacatcacactcttacccaaaa 31973401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 110 - 160
Target Start/End: Complemental strand, 11977398 - 11977348
Alignment:
Q  110 agagagacaccacactcttacccaaaatcctaaggcatgaagtttatgagt 160  Q
    ||||||||| ||||||||||||||||| | |||||||| | ||||||||||    
T  11977398 agagagacatcacactcttacccaaaaccttaaggcattaggtttatgagt 11977348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 232 - 346
Target Start/End: Complemental strand, 43834491 - 43834374
Alignment:
Q  232 ccaacaatctccctctcaagtgtgactcacccacatcactaggatgatccaaactatgatccaattcccactcccccagcaaacctaacca-ggctctga 330  Q
    ||||||||||||  ||||||||||| |||| |||||||||||  ||||||| |||| ||||| | | || |||||||| |   |||||||| || |||||    
T  43834491 ccaacaatctccacctcaagtgtgagtcactcacatcactagcctgatccacactaggatcccacttccgctcccccatcgggcctaaccagggttctga 43834392  T
Q  331 tacc--ttgttggggagt 346  Q
    ||||  ||||||||||||    
T  43834391 taccagttgttggggagt 43834374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 146
Target Start/End: Complemental strand, 17294696 - 17294659
Alignment:
Q  109 gagagagacaccacactcttacccaaaatcctaaggca 146  Q
    |||||||||||||||||||||||||||| | |||||||    
T  17294696 gagagagacaccacactcttacccaaaaccttaaggca 17294659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 146
Target Start/End: Original strand, 26661561 - 26661598
Alignment:
Q  109 gagagagacaccacactcttacccaaaatcctaaggca 146  Q
    |||||||||||||||||||||||||||| | |||||||    
T  26661561 gagagagacaccacactcttacccaaaaccttaaggca 26661598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 143
Target Start/End: Original strand, 44043812 - 44043845
Alignment:
Q  110 agagagacaccacactcttacccaaaatcctaag 143  Q
    ||||||||||||||||||||||||||||| ||||    
T  44043812 agagagacaccacactcttacccaaaatcttaag 44043845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 110 - 146
Target Start/End: Complemental strand, 14318985 - 14318949
Alignment:
Q  110 agagagacaccacactcttacccaaaatcctaaggca 146  Q
    ||||||||||||||||||||||||||| | |||||||    
T  14318985 agagagacaccacactcttacccaaaaccttaaggca 14318949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 110 - 146
Target Start/End: Original strand, 26661938 - 26661974
Alignment:
Q  110 agagagacaccacactcttacccaaaatcctaaggca 146  Q
    ||||||||||||||||||||||||||| | |||||||    
T  26661938 agagagacaccacactcttacccaaaaccttaaggca 26661974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 109 - 145
Target Start/End: Complemental strand, 34365044 - 34365008
Alignment:
Q  109 gagagagacaccacactcttacccaaaatcctaaggc 145  Q
    |||||||||||||||||||||||||||| | ||||||    
T  34365044 gagagagacaccacactcttacccaaaaccttaaggc 34365008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 110 - 146
Target Start/End: Complemental strand, 41759601 - 41759565
Alignment:
Q  110 agagagacaccacactcttacccaaaatcctaaggca 146  Q
    ||||||||||||||||||||||||||| | |||||||    
T  41759601 agagagacaccacactcttacccaaaaccttaaggca 41759565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 110 - 138
Target Start/End: Original strand, 47159311 - 47159339
Alignment:
Q  110 agagagacaccacactcttacccaaaatc 138  Q
    |||||||||||||||||||||||||||||    
T  47159311 agagagacaccacactcttacccaaaatc 47159339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 78; Significance: 4e-36; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 86 - 346
Target Start/End: Complemental strand, 28226796 - 28226536
Alignment:
Q  86 gctaaacgtctaggaccttctaagagagagacaccacactcttacccaaaatcctaaggcatgaagtttatgagtctcctcccttaaatattcaatgttt 185  Q
    ||||||||||||||| |    ||||||||||||||||||||||||| |||| |||||| ||    |||||||||||||||| |||| |||| |||| |||    
T  28226796 gctaaacgtctaggatccgtaaagagagagacaccacactcttaccaaaaa-cctaagacaatgggtttatgagtctcctctcttatatatccaatattt 28226698  T
Q  186 gctccatttcgagttgatgtgggacattatcactaacatttgatttccaacaatctccctctcaagtgtgactcacccacatcactaggatgatccaaac 285  Q
    || |||||||  || |||||| || ||||||| | ||| |||||||||||||||||||| |||||| |||||||| || |||||||||| |||| | |||    
T  28226697 gccccatttcttgtcgatgtgtgatattatcagtcacacttgatttccaacaatctccccctcaagcgtgactca-cctcatcactaggttgattc-aac 28226600  T
Q  286 tatgatccaattcccactcccccagcaaacctaaccaggctctgatacc---ttgttggggagt 346  Q
    || |||||   |||||||| ||||||||  ||||| |||||||||||||   ||||||||||||    
T  28226599 taggatcccgctcccactctcccagcaagtctaactaggctctgataccagtttgttggggagt 28226536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 85 - 238
Target Start/End: Complemental strand, 28226480 - 28226327
Alignment:
Q  85 ggctaaacgtctaggaccttctaagagagagacaccacactcttacccaaaatcctaaggcatgaagtttatgagtctcctcccttaaatattcaatgtt 184  Q
    |||||||| | |||||||| | ||||||||||||||||||||||||| |||| |||||| ||    ||||||| |||||||| |||| |||| ||| |||    
T  28226480 ggctaaacatataggacctgcaaagagagagacaccacactcttacctaaaaccctaagacaatgtgtttatgggtctcctctcttatatatccaacgtt 28226381  T
Q  185 tgctccatttcgagttgatgtgggacattatcactaacatttgatttccaacaa 238  Q
    | ||||||||| ||| |||||||||||||| |||| ||| ||||||||||||||    
T  28226380 tcctccatttctagtcgatgtgggacattaacactcacacttgatttccaacaa 28226327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 197 - 401
Target Start/End: Original strand, 35414271 - 35414476
Alignment:
Q  197 agttgatgtgggacattatcactaacatttgatttccaacaatctccctctcaagtgtgactcacccacatcactaggatgatccaaactatgatccaat 296  Q
    ||||||||| ||| || |||| | ||||||||||||||||||| ||  ||| |||||||||||| ||| | ||||| || | |||| |||| |||||  |    
T  35414271 agttgatgtaggatataatcattcacatttgatttccaacaatttc--tctgaagtgtgactcatccaaaccactaagacggtccacactaggatcccgt 35414368  T
Q  297 tcccactcccccagcaaacctaaccaggctctgatacc---ttgttggggagtctacgaagcgcttggagcggcaataggctaaacgtctaggacccact 393  Q
    || |||||||  ||||| |||||| || ||||||||||   || |||||||||||  | | |||||| ||| |||||  |||||| |||||||||||| |    
T  35414369 tcacactcccttagcaagcctaacaagactctgataccaaattattggggagtctggggaacgcttgaagcagcaatgagctaaatgtctaggacccatt 35414468  T
Q  394 aagagaga 401  Q
    ||||||||    
T  35414469 aagagaga 35414476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 159 - 239
Target Start/End: Original strand, 13792583 - 13792663
Alignment:
Q  159 gtctcctcccttaaatattcaatgtttgctccatttcgagttgatgtgggacattatcactaacatttgatttccaacaat 239  Q
    |||||||| |||| ||||  ||| ||| ||||||||| |||||||||||||||| |||||| ||| |||||||||||||||    
T  13792583 gtctcctctcttatatatcaaatatttcctccatttctagttgatgtgggacataatcactcacacttgatttccaacaat 13792663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 336 - 401
Target Start/End: Original strand, 35448596 - 35448661
Alignment:
Q  336 tgttggggagtctacgaagcgcttggagcggcaataggctaaacgtctaggacccactaagagaga 401  Q
    |||||||||||||    |||||||||||||||||||| ||||||||||| || |||||||||||||    
T  35448596 tgttggggagtctggagagcgcttggagcggcaatagactaaacgtctaagatccactaagagaga 35448661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 56 - 136
Target Start/End: Original strand, 22062780 - 22062860
Alignment:
Q  56 gagtccggggagcacatggagcgataataggctaaacgtctaggaccttctaagagagagacaccacactcttacccaaaa 136  Q
    ||||||||||||||| |||||||  |||  ||||||| | |||||||   ||||||||| |||||||||||||||||||||    
T  22062780 gagtccggggagcacttggagcggcaatgagctaaacatttaggacccgttaagagagaaacaccacactcttacccaaaa 22062860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 182 - 293
Target Start/End: Original strand, 11727758 - 11727869
Alignment:
Q  182 gtttgctccatttcgagttgatgtgggacattatcactaacatttgatttccaacaatctccctctcaagtgtgactcacccacatcactaggatgatcc 281  Q
    |||| ||||||||| |||  |||| | |||| || ||| ||| || |||| ||| |||||||||||| ||||||| ||||||||||||||||  ||||||    
T  11727758 gttttctccatttctagtcaatgtagaacataattactcacacttaattttcaataatctccctctcgagtgtgagtcacccacatcactagtctgatcc 11727857  T
Q  282 aaactatgatcc 293  Q
    | |||| |||||    
T  11727858 acactaggatcc 11727869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 336 - 423
Target Start/End: Original strand, 22062773 - 22062860
Alignment:
Q  336 tgttggggagtctacgaagcgcttggagcggcaataggctaaacgtctaggacccactaagagagagacactacactcttacccaaaa 423  Q
    ||||||||||||   | ||| ||||||||||||||  ||||||| | ||||||||  ||||||||| |||| ||||||||||||||||    
T  22062773 tgttggggagtccggggagcacttggagcggcaatgagctaaacatttaggacccgttaagagagaaacaccacactcttacccaaaa 22062860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 114 - 237
Target Start/End: Original strand, 30219925 - 30220048
Alignment:
Q  114 agacaccacactcttacccaaaatcctaaggcatgaagtttatgagtctcctcccttaaatattcaatgtttgctccatttcgagttgatgtgggacatt 213  Q
    ||||||||||||| ||| ||||| |||||| ||    ||||||| |||||||| ||||| ||| |||  ||| ||||| ||| ||| ||||||||||||     
T  30219925 agacaccacactcctacacaaaaccctaagacaattggtttatgggtctcctctcttaagtatccaacatttcctccagttctagtcgatgtgggacata 30220024  T
Q  214 atcactaacatttgatttccaaca 237  Q
    ||| || ||| |||||||||||||    
T  30220025 atcgctcacacttgatttccaaca 30220048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 154 - 287
Target Start/End: Complemental strand, 19548218 - 19548086
Alignment:
Q  154 tatgagtctcctcccttaaatattcaatgtttgctccatttcgagttgatgtgggacattatcactaacatttgatttccaacaatctccctctcaagtg 253  Q
    |||| |||||||| |||| |||| |||  ||| ||| ||||| ||| |||||||||||| | |||| ||  ||||   ||||||||| | | ||||||||    
T  19548218 tatgggtctcctctcttatatatccaacatttcctctatttctagtcgatgtgggacataaccactcacgcttgaaacccaacaatccctc-ctcaagtg 19548120  T
Q  254 tgactcacccacatcactaggatgatccaaacta 287  Q
    ||| ||||||||||||||||  ||||||||||||    
T  19548119 tgagtcacccacatcactagcctgatccaaacta 19548086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 427 - 480
Target Start/End: Original strand, 30219943 - 30219996
Alignment:
Q  427 caaaaccctaagacatcaggtttatgggtctcttctcttaaatatccaacattt 480  Q
    |||||||||||||||   |||||||||||||| |||||||| ||||||||||||    
T  30219943 caaaaccctaagacaattggtttatgggtctcctctcttaagtatccaacattt 30219996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 110 - 146
Target Start/End: Complemental strand, 3672819 - 3672783
Alignment:
Q  110 agagagacaccacactcttacccaaaatcctaaggca 146  Q
    ||||||||||||||||||||||||||||| |||||||    
T  3672819 agagagacaccacactcttacccaaaatcttaaggca 3672783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 110 - 146
Target Start/End: Complemental strand, 37106042 - 37106006
Alignment:
Q  110 agagagacaccacactcttacccaaaatcctaaggca 146  Q
    ||||||||||||||||||||||||||||| |||||||    
T  37106042 agagagacaccacactcttacccaaaatcttaaggca 37106006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 336 - 423
Target Start/End: Complemental strand, 28226833 - 28226746
Alignment:
Q  336 tgttggggagtctacgaagcgcttggagcggcaataggctaaacgtctaggacccactaagagagagacactacactcttacccaaaa 423  Q
    ||||||||||| |  ||| ||||||||| | ||||  ||||||||||||||| ||   ||||||||||||| ||||||||||| ||||    
T  28226833 tgttggggagtttgagaaacgcttggagtgacaatgtgctaaacgtctaggatccgtaaagagagagacaccacactcttaccaaaaa 28226746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 107 - 146
Target Start/End: Original strand, 28254274 - 28254313
Alignment:
Q  107 aagagagagacaccacactcttacccaaaatcctaaggca 146  Q
    |||||||||||||||||||||||||||||| | |||||||    
T  28254274 aagagagagacaccacactcttacccaaaaccttaaggca 28254313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 112 - 146
Target Start/End: Original strand, 5543040 - 5543074
Alignment:
Q  112 agagacaccacactcttacccaaaatcctaaggca 146  Q
    ||||||||||||||||||||||||||| |||||||    
T  5543040 agagacaccacactcttacccaaaatcttaaggca 5543074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 304 - 401
Target Start/End: Original strand, 13792248 - 13792339
Alignment:
Q  304 cccccagcaaacctaaccaggctctgatacc---ttgttggggagtctacgaagcgcttggagcggcaataggctaaacgtctaggacccactaagagag 400  Q
    |||||||||| |||||| |||||||||||||   ||||||||||||||| ||         ||||||||  || ||||||||||||||||||||||||||    
T  13792248 cccccagcaagcctaactaggctctgataccagtttgttggggagtctagga---------agcggcaaggggttaaacgtctaggacccactaagagag 13792338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 426 - 480
Target Start/End: Complemental strand, 19548241 - 19548187
Alignment:
Q  426 ccaaaaccctaagacatcaggtttatgggtctcttctcttaaatatccaacattt 480  Q
    |||||||| |||||||| || | |||||||||| ||||||| |||||||||||||    
T  19548241 ccaaaaccttaagacattagatatatgggtctcctctcttatatatccaacattt 19548187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 147
Target Start/End: Original strand, 33954301 - 33954339
Alignment:
Q  109 gagagagacaccacactcttacccaaaatcctaaggcat 147  Q
    ||||||||| |||||||||||||||||||| ||||||||    
T  33954301 gagagagacgccacactcttacccaaaatcgtaaggcat 33954339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 187 - 273
Target Start/End: Original strand, 44981880 - 44981965
Alignment:
Q  187 ctccatttcgagttgatgtgggacattatcactaacatttgatttccaacaatctccctctcaagtgtgactcacccacatcactag 273  Q
    ||||||||| ||| |||| ||||| | | |||| ||| |||| ||||| |||| |||| ||||||||||| ||||||||||||||||    
T  44981880 ctccatttctagtcgatgcgggac-taaccactcacacttgaattccagcaatttccccctcaagtgtgagtcacccacatcactag 44981965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 143
Target Start/End: Original strand, 15511535 - 15511568
Alignment:
Q  110 agagagacaccacactcttacccaaaatcctaag 143  Q
    ||||||||||||||||||||||||||||| ||||    
T  15511535 agagagacaccacactcttacccaaaatcttaag 15511568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 146
Target Start/End: Original strand, 28531353 - 28531390
Alignment:
Q  109 gagagagacaccacactcttacccaaaatcctaaggca 146  Q
    ||||||| |||||||||||||||||||||| |||||||    
T  28531353 gagagagtcaccacactcttacccaaaatcttaaggca 28531390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 146
Target Start/End: Complemental strand, 30313296 - 30313259
Alignment:
Q  109 gagagagacaccacactcttacccaaaatcctaaggca 146  Q
    ||||||||| |||||||||||||||||||| |||||||    
T  30313296 gagagagacgccacactcttacccaaaatcttaaggca 30313259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 215
Target Start/End: Original strand, 35414470 - 35414575
Alignment:
Q  110 agagagacaccacactcttacccaaaatcctaaggcatgaagtttatgagtctcctcccttaaatattcaatgtttgctccatttcgagttgatgtggga 209  Q
    |||||||||||||| | ||| ||||||| ||||||||  || ||||||| | | ||| |||| ||||  || |||||||||||||| | |||| ||| ||    
T  35414470 agagagacaccacagttttatccaaaattctaaggcaataaatttatgaattttctctcttatatatcaaacgtttgctccatttctaattgacgtgaga 35414569  T
Q  210 cattat 215  Q
    ||||||    
T  35414570 cattat 35414575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 110 - 146
Target Start/End: Complemental strand, 6421849 - 6421813
Alignment:
Q  110 agagagacaccacactcttacccaaaatcctaaggca 146  Q
    ||||||||||||||||||||||||||| | |||||||    
T  6421849 agagagacaccacactcttacccaaaaccttaaggca 6421813  T

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Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 110 - 146
Target Start/End: Original strand, 36178211 - 36178247
Alignment:
Q  110 agagagacaccacactcttacccaaaatcctaaggca 146  Q
    |||||| |||||||||||||||||||||| |||||||    
T  36178211 agagaggcaccacactcttacccaaaatcttaaggca 36178247  T

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Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 110 - 146
Target Start/End: Original strand, 36178645 - 36178681
Alignment:
Q  110 agagagacaccacactcttacccaaaatcctaaggca 146  Q
    ||||||||||||||||||||||||||| | |||||||    
T  36178645 agagagacaccacactcttacccaaaaccttaaggca 36178681  T

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Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 201 - 282
Target Start/End: Complemental strand, 40053481 - 40053398
Alignment:
Q  201 gatgtgggacattatcactaacatttgatttccaacaat--ctccctctcaagtgtgactcacccacatcactaggatgatcca 282  Q
    |||||||||||| || | | ||| |||||| ||||||||  | ||| ||||||||||| ||||||||||||||||  |||||||    
T  40053481 gatgtgggacataattattcacacttgattcccaacaatagccccccctcaagtgtgagtcacccacatcactagcctgatcca 40053398  T

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Target: chr8 (Bit Score: 56; Significance: 5e-23; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 129 - 307
Target Start/End: Original strand, 5981501 - 5981680
Alignment:
Q  129 acccaaaatcctaaggcatgaagtttatgagtctcctcccttaaatattcaatgtttgctccatttcgagttgatgtgggacattatcactaacatttga 228  Q
    |||||||| | |||||||| | ||  ||| ||| |||| |||| |||| ||| |||| ||||||| | ||| |||||||||||| |||||| ||| ||||    
T  5981501 acccaaaaccttaaggcatcaggtacatgggtcccctctcttatatatccaacgttttctccattcctagtcgatgtgggacataatcactcacacttga 5981600  T
Q  229 tttccaa-caatctccctctcaagtgtgactcacccacatcactaggatgatccaaactatgatccaattcccactcccc 307  Q
    ||||||| ||||||||| |||||| |||| ||||||||||||||||  ||||||| |||| |||||   |||||||||||    
T  5981601 tttccaaacaatctccccctcaagcgtgagtcacccacatcactagcctgatccacactaggatcccgctcccactcccc 5981680  T

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Target: chr8; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 63 - 195
Target Start/End: Original strand, 18829835 - 18829967
Alignment:
Q  63 gggagcacatggagcgataataggctaaacgtctaggaccttctaagagagagacaccacactcttacccaaaatcctaaggcatgaagtttatgagtct 162  Q
    |||||| | |||||||  ||| ||||||||||||||||||  |||||||| ||| |||||||||||| ||||||||||||||||    ||||||  || |    
T  18829835 gggagcgcttggagcggcaatgggctaaacgtctaggacccgctaagagaaagataccacactcttatccaaaatcctaaggcaatgggtttataggttt 18829934  T
Q  163 cctcccttaaatattcaatgtttgctccatttc 195  Q
     ||| ||||||||| ||||||||||||||||||    
T  18829935 actctcttaaatatccaatgtttgctccatttc 18829967  T

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Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 265 - 423
Target Start/End: Original strand, 3671046 - 3671207
Alignment:
Q  265 catcactaggatgatccaaactatgatccaattcccactcccccagcaaacctaaccaggctctgatacc---ttgttggggagtctacgaagcgcttgg 361  Q
    ||||||||||| |||||| |||| |||||   ||||||||||||||||| |||| |||| ||||||||||   ||||||||||||||  | | ||| |||    
T  3671046 catcactaggacgatccacactaggatcccgctcccactcccccagcaagcctagccagactctgataccaatttgttggggagtctggggaacgcctgg 3671145  T
Q  362 agcggcaataggctaaacgtctaggacccactaagagagagacactacactcttacccaaaa 423  Q
    |||||||||  || ||| ||||| ||||| ||||||||||||||| | ||| ||| ||||||    
T  3671146 agcggcaatgagcgaaatgtctaagacccgctaagagagagacaccaaactattatccaaaa 3671207  T

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Target: chr8; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 353 - 423
Target Start/End: Original strand, 18829838 - 18829908
Alignment:
Q  353 agcgcttggagcggcaataggctaaacgtctaggacccactaagagagagacactacactcttacccaaaa 423  Q
    |||||||||||||||||| ||||||||||||||||||| |||||||| ||| || ||||||||| ||||||    
T  18829838 agcgcttggagcggcaatgggctaaacgtctaggacccgctaagagaaagataccacactcttatccaaaa 18829908  T

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Target: chr8; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 154 - 322
Target Start/End: Original strand, 2954309 - 2954477
Alignment:
Q  154 tatgagtctcctcccttaaatattcaatgtttgctccatttcgagttgatgtgggacattatcactaacatttgatttccaacaatctccctctcaagtg 253  Q
    |||| |||||||| |||| |||| |||  ||| ||||||| | ||| ||||||||| || |||||| ||| ||||    |||||||||||| ||||||||    
T  2954309 tatgggtctcctctcttatatatccaacattttctccattcctagtcgatgtgggaaataatcactcacacttgaaactcaacaatctccccctcaagtg 2954408  T
Q  254 tgactcacccacatcactaggatgatccaaactatgatccaattcccactcccccagcaaacctaacca 322  Q
    ||| ||||||||||||||||  ||||||| |||| ||||    ||||||||||||| | | ||||||||    
T  2954409 tgagtcacccacatcactagcttgatccacactaggatcttgctcccactcccccaccgagcctaacca 2954477  T

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Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 225 - 283
Target Start/End: Original strand, 23753054 - 23753112
Alignment:
Q  225 ttgatttccaacaatctccctctcaagtgtgactcacccacatcactaggatgatccaa 283  Q
    |||||||||| ||||||||| ||||||||||| ||||||||||||||| ||||||||||    
T  23753054 ttgatttccatcaatctccccctcaagtgtgattcacccacatcactacgatgatccaa 23753112  T

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Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 110 - 146
Target Start/End: Original strand, 40579309 - 40579345
Alignment:
Q  110 agagagacaccacactcttacccaaaatcctaaggca 146  Q
    |||||||||||||||||||||||||||||||||||||    
T  40579309 agagagacaccacactcttacccaaaatcctaaggca 40579345  T

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Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 105 - 219
Target Start/End: Original strand, 3671176 - 3671290
Alignment:
Q  105 ctaagagagagacaccacactcttacccaaaatcctaaggcatgaagtttatgagtctcctcccttaaatattcaatgtttgctccatttcgagttgatg 204  Q
    ||||||||||||||||| ||| ||| |||||| |||||||||  | |||||||  ||||||| |||| |||| ||| |||| ||  ||| | ||| ||||    
T  3671176 ctaagagagagacaccaaactattatccaaaaccctaaggcagtaggtttatggttctcctctcttatatatccaacgtttcctatattcctagtcgatg 3671275  T
Q  205 tgggacattatcact 219  Q
    |||||||| ||||||    
T  3671276 tgggacataatcact 3671290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 110 - 146
Target Start/End: Original strand, 33113407 - 33113443
Alignment:
Q  110 agagagacaccacactcttacccaaaatcctaaggca 146  Q
    ||||||||||||||||||||||||||||| |||||||    
T  33113407 agagagacaccacactcttacccaaaatcttaaggca 33113443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 110 - 161
Target Start/End: Complemental strand, 3669805 - 3669754
Alignment:
Q  110 agagagacaccacactcttacccaaaatcctaaggcatgaagtttatgagtc 161  Q
    ||||||||||||||||||||||||||| | |||||||   ||||||||||||    
T  3669805 agagagacaccacactcttacccaaaaccttaaggcaatgagtttatgagtc 3669754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 110 - 161
Target Start/End: Complemental strand, 34834994 - 34834943
Alignment:
Q  110 agagagacaccacactcttacccaaaatcctaaggcatgaagtttatgagtc 161  Q
    ||||||||||||||||||||||||||| | |||||||   ||||||||||||    
T  34834994 agagagacaccacactcttacccaaaaccttaaggcaatgagtttatgagtc 34834943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 110 - 144
Target Start/End: Complemental strand, 30359727 - 30359693
Alignment:
Q  110 agagagacaccacactcttacccaaaatcctaagg 144  Q
    ||||||||||||||||||||||||||||| |||||    
T  30359727 agagagacaccacactcttacccaaaatcttaagg 30359693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 110 - 146
Target Start/End: Complemental strand, 147938 - 147902
Alignment:
Q  110 agagagacaccacactcttacccaaaatcctaaggca 146  Q
    ||||||||||||||||||||||||||| | |||||||    
T  147938 agagagacaccacactcttacccaaaaccttaaggca 147902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 335 - 423
Target Start/End: Original strand, 3670777 - 3670865
Alignment:
Q  335 ttgttggggagtctacgaagcgcttggagcggcaataggctaaacgtctaggacccactaagagagagacactacactcttacccaaaa 423  Q
    ||||||||||||||| |  ||||||||||||| ||  ||  ||||||||| ||||| | ||||||||||||| ||| | ||| ||||||    
T  3670777 ttgttggggagtctagggggcgcttggagcggtaacgggtgaaacgtctaagacccgccaagagagagacaccacattattatccaaaa 3670865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 108 - 144
Target Start/End: Original strand, 3670993 - 3671029
Alignment:
Q  108 agagagagacaccacactcttacccaaaatcctaagg 144  Q
    ||||||||| |||||||| ||||||||||||||||||    
T  3670993 agagagagagaccacactattacccaaaatcctaagg 3671029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 110 - 146
Target Start/End: Complemental strand, 5915985 - 5915949
Alignment:
Q  110 agagagacaccacactcttacccaaaatcctaaggca 146  Q
    ||||||||||||||||||||||||||| | |||||||    
T  5915985 agagagacaccacactcttacccaaaaccttaaggca 5915949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 110 - 146
Target Start/End: Complemental strand, 6651612 - 6651576
Alignment:
Q  110 agagagacaccacactcttacccaaaatcctaaggca 146  Q
    ||||||||||||||||||||||||||| | |||||||    
T  6651612 agagagacaccacactcttacccaaaaccttaaggca 6651576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 110 - 146
Target Start/End: Original strand, 20870613 - 20870649
Alignment:
Q  110 agagagacaccacactcttacccaaaatcctaaggca 146  Q
    |||||||||||||||||||| |||||||| |||||||    
T  20870613 agagagacaccacactcttatccaaaatcttaaggca 20870649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 110 - 146
Target Start/End: Complemental strand, 30441203 - 30441167
Alignment:
Q  110 agagagacaccacactcttacccaaaatcctaaggca 146  Q
    ||||||||||||||||||||||||||| | |||||||    
T  30441203 agagagacaccacactcttacccaaaaccttaaggca 30441167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 146
Target Start/End: Complemental strand, 5101 - 5064
Alignment:
Q  109 gagagagacaccacactcttacccaaaatcctaaggca 146  Q
    |||||||||||||||||||||||||||| | |||||||    
T  5101 gagagagacaccacactcttacccaaaaccataaggca 5064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 110 - 146
Target Start/End: Complemental strand, 5475 - 5439
Alignment:
Q  110 agagagacaccacactcttacccaaaatcctaaggca 146  Q
    |||||||||||||||||||| |||||||| |||||||    
T  5475 agagagacaccacactcttatccaaaatcttaaggca 5439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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