View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4018_high_4 (Length: 349)
Name: NF4018_high_4
Description: NF4018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4018_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 9 - 333
Target Start/End: Complemental strand, 28059563 - 28059237
Alignment:
| Q |
9 |
acatcatcatatataatcattgcttaaaatattattcatatatagtacagtttttactttgcaccaaaacacaaataataatatattagtttttactaat |
108 |
Q |
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| T |
28059563 |
acatcatcatatataatcattgcttaaaatattattcatatatagtatagtttttactttgcaccaaaacacaaataataatagattagtttttactaat |
28059464 |
T |
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| Q |
109 |
ttatttatctgtggaccactaaactatgagtgccgcccgtcacgtgatagcatgggatttatattt-tat-ataaacttagaaactcacaacagtggtca |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||| |
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| T |
28059463 |
ttatttatctgtggaccactaaactatgagtgccgcccgtcacgtgatagcatgggatttatatttatataataaacttagaaactcaccacagtggtca |
28059364 |
T |
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| Q |
207 |
gtttagaatacatataatggttggttgggagtttaattttcttttgagaaataataatattggttggaagtaagaacatgctagaattgtagtacgtccc |
306 |
Q |
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| T |
28059363 |
gtttagaatacatataatggttagttgggagtttaattttcttttgagaaataataatattggttggaagtaagaacatgctagaattgtagtacgtccc |
28059264 |
T |
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| Q |
307 |
gttgccaataaagtaatcgctgcatat |
333 |
Q |
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||||||||||||||||||||||||||| |
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| T |
28059263 |
gttgccaataaagtaatcgctgcatat |
28059237 |
T |
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