View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4018_low_3 (Length: 470)
Name: NF4018_low_3
Description: NF4018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4018_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 419; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 19 - 465
Target Start/End: Complemental strand, 31106351 - 31105905
Alignment:
| Q |
19 |
caagggatatcaaagacctagcagaaatactgaaactatcagcactcatatagttgaagagactaaataagatgatggaaaactacaagctagttgtcag |
118 |
Q |
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| T |
31106351 |
caagggatatcaaagacctagcagaaatactgaaactatcagcactcatatagttgaagagactaaataagatgatggaaaactacaagctagttgtcag |
31106252 |
T |
|
| Q |
119 |
caccattagagtaaattattttgaaccattcaatatcaacattatatgtcaaaatgaaatgctgttcattttaatgataaaagaaatttttggatagaat |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31106251 |
caccattagagtaaattattttgaaccattcaatatcaacattatatgtcaaaatgaaatgctgttcattttaatgataaaagaaatttttggatagaat |
31106152 |
T |
|
| Q |
219 |
gacattttttagatcacattattatatcctttaacacagcctagttaggtgcaaatgacattttctatttcacaaatgttagttagataaaatgaatttg |
318 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
31106151 |
tacattttttagatcacatcattatatcctttaacacagcctagttagatgcaaatgacattttctatttcacaaatgttagttagataaaatgagtttg |
31106052 |
T |
|
| Q |
319 |
attttgcacggaaaagttgtaaactctctcaagacacacaactacccaagccccaagtacaatcaatagactagggatgttcggggcgaagaaaactcaa |
418 |
Q |
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| T |
31106051 |
attttgcacggaaaagttgtaaactctctcaagacacacaactacccaagccccaagtacaaccagtagactagggatgttcggggtgaagaaaactcaa |
31105952 |
T |
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| Q |
419 |
tataactctatatttataacaactttctagctattttttcatctcac |
465 |
Q |
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| T |
31105951 |
tataactctatatttataacaactttctagctattttttcatctcac |
31105905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 25 - 133
Target Start/End: Complemental strand, 31042699 - 31042595
Alignment:
| Q |
25 |
atatcaaagacctagcagaaatactgaaactatcagcactcatatagttgaagagactaaataagatgatggaaaactacaagctagttgtcagcaccat |
124 |
Q |
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||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||| ||||||||| || || ||||||| ||| ||||||||||| |
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| T |
31042699 |
atatcaaagacctagcagaaatagtgaaactatcaccactcatatagttgaatagaataaataagacaattgagaactaca----agtagtcagcaccat |
31042604 |
T |
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| Q |
125 |
tagagtaaa |
133 |
Q |
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||||||||| |
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| T |
31042603 |
tagagtaaa |
31042595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 27 - 90
Target Start/End: Complemental strand, 31107988 - 31107925
Alignment:
| Q |
27 |
atcaaagacctagcagaaatactgaaactatcagcactcatatagttgaagagactaaataaga |
90 |
Q |
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| T |
31107988 |
atcaaagacctagcagaaatcatgaaactatcaccactcatatagttgaagagaataaataaga |
31107925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 238 - 309
Target Start/End: Complemental strand, 31107895 - 31107828
Alignment:
| Q |
238 |
tattatatcctttaacacagcctagttaggtgcaaatgacattttctatttcacaaatgttagttagataaa |
309 |
Q |
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| T |
31107895 |
tattatatcctttaacacagcctct----gtgcagatgacattttctattgcacaaatgttagttagataaa |
31107828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 339 - 427
Target Start/End: Original strand, 3511677 - 3511763
Alignment:
| Q |
339 |
aaactctctcaagacacacaactacccaagccccaagtacaatcaatagactagggatgttcggggcgaagaaaactcaatataactct |
427 |
Q |
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||||||||||||||||||||||||||||| |||||| |||| ||| ||||||| | |||| | || || ||||||||||||||||||| |
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| T |
3511677 |
aaactctctcaagacacacaactacccaatccccaa-tacacccaaaagactagagttgtt-gtggtgatgaaaactcaatataactct |
3511763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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