View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4018_low_6 (Length: 249)
Name: NF4018_low_6
Description: NF4018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4018_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 3405437 - 3405196
Alignment:
| Q |
1 |
tgagatcaatgtgttgttt-tttcaaaacatgtacttatttaaatgttgtaagagttttgttgaaaatatgttaggatctttatattttttgtttatgga |
99 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3405437 |
tgagatcaatgtgttgtttgtttcaaaacatgtacttatttaaattttgtaagagttttgttgaaaatatgttaggatctttatattttttgtttatgga |
3405338 |
T |
|
| Q |
100 |
tataatatcatgtaaattgagataatatctcattcatttgtataaaaaacgtcctcatttatttgttatttattgtctcgagtctataaacataattttg |
199 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3405337 |
tataatatcatgtaaattgaaataatatctcattcatttgtataaaaaacgtcctcatttatttgttatttattgtctcgagtctataaacataattttg |
3405238 |
T |
|
| Q |
200 |
ctgaatagttaaaa--cacagtttcacaatattatgtctctg |
239 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||| |
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| T |
3405237 |
ctgaatagttaaaacacacagtttcacaatattatgtctctg |
3405196 |
T |
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