View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4018_low_7 (Length: 216)
Name: NF4018_low_7
Description: NF4018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4018_low_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 167; Significance: 1e-89; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 13 - 207
Target Start/End: Complemental strand, 27521516 - 27521322
Alignment:
| Q |
13 |
acatcatcaatgcttcatcatcacactcacaacaactctgtcaaatgccgttcaccatcatcattatctgctcaccaaccatcatccaagaagcattctt |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||| |
|
|
| T |
27521516 |
acatcatcaatgcttcatcatcacactcacaacaactctgtcaaacgccgttcaccatcatcatcatctgcccaccaaccatcatccaagaagcattctt |
27521417 |
T |
|
| Q |
113 |
ttgacgcaagcaatctcatgcgtaatggcttctctgccattacacttcctttcagtctccgtgggaatgctcttagccactgtgtctctgatcct |
207 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |
|
|
| T |
27521416 |
ttgacgcaagcaatctcacccgtaatggcttctctgccattacacttcctttcagtctccgcgggaatgctcttagccgctgtgtctctgatcct |
27521322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 13 - 206
Target Start/End: Original strand, 27461919 - 27462112
Alignment:
| Q |
13 |
acatcatcaatgcttcatcatcacactcacaacaactctgtcaaatgccgttcaccatcatcattatctgctcaccaaccatcatccaagaagcattctt |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
27461919 |
acatcatcaatgcttcatcatcacactcacaacaacactgtcaaacgccgttcaccatcatcatcatcttatcaccaaccatcatccaagaagcattctt |
27462018 |
T |
|
| Q |
113 |
ttgacgcaagcaatctcatgcgtaatggcttctctgccattacacttcctttcagtctccgtgggaatgctcttagccactgtgtctctgatcc |
206 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
27462019 |
ttgacgcaagcaatctcacccgtaatggcttctctgccattacacttcctttcagtctccgtggaaatgctcttagccgctgtgtctctgatcc |
27462112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 13 - 206
Target Start/End: Original strand, 27482058 - 27482251
Alignment:
| Q |
13 |
acatcatcaatgcttcatcatcacactcacaacaactctgtcaaatgccgttcaccatcatcattatctgctcaccaaccatcatccaagaagcattctt |
112 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| |||||||| |||||||||||||||||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
27482058 |
acatcatcaatgcctcatcatcacactcacaacaacactgtcaaacgccgttcaccatcatcatcatcttatcaccaaccatcatccaagaagcattctt |
27482157 |
T |
|
| Q |
113 |
ttgacgcaagcaatctcatgcgtaatggcttctctgccattacacttcctttcagtctccgtgggaatgctcttagccactgtgtctctgatcc |
206 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
27482158 |
ttgacgcaagcaatctcacccgtaatggcttctctgccattacaattcctttcagtctccgcgggaatgctcttagccgctgtgtctctgatcc |
27482251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 13 - 206
Target Start/End: Original strand, 18986019 - 18986212
Alignment:
| Q |
13 |
acatcatcaatgcttcatcatcacactcacaacaactctgtcaaatgccgttcaccatcatcattatctgctcaccaaccatcatccaagaagcattctt |
112 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| |||||||| | ||||||||||||||| ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
18986019 |
acatcatcaatgcttcatcatcaccctcacaacaacactgtcaaactctgttcaccatcatcatcatctgctcaccaaccgtcatccaagaagcattctt |
18986118 |
T |
|
| Q |
113 |
ttgacgcaagcaatctcatgcgtaatggcttctctgccattacacttcctttcagtctccgtgggaatgctcttagccactgtgtctctgatcc |
206 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
18986119 |
ttgacgcaagcaatctcacccgtaatggcttctccgccattacactttctttcagtctccgtgggaatactcttagccgctgtgtctctgatcc |
18986212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 151; Significance: 5e-80; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 33 - 206
Target Start/End: Original strand, 29425232 - 29425408
Alignment:
| Q |
33 |
tcacactcacaacaactctgtcaaatgccgttcacc---atcatcattatctgctcaccaaccatcatccaagaagcattcttttgacgcaagcaatctc |
129 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29425232 |
tcacactcacaacaactctgtcaaacgccgttcaccaccatcatcatcatctgctcaccaaccatcatccaagaagcattcttttgacgcaagcaatctc |
29425331 |
T |
|
| Q |
130 |
atgcgtaatggcttctctgccattacacttcctttcagtctccgtgggaatgctcttagccactgtgtctctgatcc |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
29425332 |
atgcgtaatggcttctctgccattacacttcctttcagtctccgtgggaatgctcttagccgctgtgtctctgatcc |
29425408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 13 - 206
Target Start/End: Original strand, 1758067 - 1758260
Alignment:
| Q |
13 |
acatcatcaatgcttcatcatcacactcacaacaactctgtcaaatgccgttcaccatcatcattatctgctcaccaaccatcatccaagaagcattctt |
112 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||| ||||||||||||||||||| |||||||||||||| |
|
|
| T |
1758067 |
acatcatcaatgcttcatcatcactctcacaaaaactctgtcaaacgccgttcaccatcatcatcatctgctcaccaaccatcactcaagaagcattctt |
1758166 |
T |
|
| Q |
113 |
ttgacgcaagcaatctcatgcgtaatggcttctctgccattacacttcctttcagtctccgtgggaatgctcttagccactgtgtctctgatcc |
206 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
1758167 |
ttgacgcaagcaatctcacccgtaatggcttctccgccattacacttcctttcagtctccgcgggaatgctcttagccgctgtgtctctgatcc |
1758260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 27 - 206
Target Start/End: Complemental strand, 29568536 - 29568357
Alignment:
| Q |
27 |
tcatcatcacactcacaacaactctgtcaaatgccgttcaccatcatcattatctgctcaccaaccatcatccaagaagcattcttttgacgcaagcaat |
126 |
Q |
| |
|
|||||||||||||||||| |||||| ||||| ||| |||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||||||| |
|
|
| T |
29568536 |
tcatcatcacactcacaaaaactctttcaaacgccattcaccatcatcatcttctgctcaccaactatcatccaagaagcattctttcgacgcaagcaat |
29568437 |
T |
|
| Q |
127 |
ctcatgcgtaatggcttctctgccattacacttcctttcagtctccgtgggaatgctcttagccactgtgtctctgatcc |
206 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
29568436 |
ctcacccgtaatggcttctccgccattacacttcctttcagtctccgtgggaatgctcttagccgctgtgtctctgatcc |
29568357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 13 - 206
Target Start/End: Original strand, 29168171 - 29168367
Alignment:
| Q |
13 |
acatcatcaatgcttcat---catcacactcacaacaactctgtcaaatgccgttcaccatcatcattatctgctcaccaaccatcatccaagaagcatt |
109 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||| | |||||||||||||||| ||||||||||||| ||||||||| ||||||| |
|
|
| T |
29168171 |
acatcatcaatgcttcatcatcatcacactcacaacaactctgtcaaacgtcgttcaccatcatcatcttctgctcaccaactatcatccaataagcatt |
29168270 |
T |
|
| Q |
110 |
cttttgacgcaagcaatctcatgcgtaatggcttctctgccattacacttcctttcagtctccgtgggaatgctcttagccactgtgtctctgatcc |
206 |
Q |
| |
|
|||| ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
29168271 |
ctttcaacgcaagcaatctcacccgtaatggcttctccaccattacacttcctttcagtctccgtgggaatgctcttagctgctgtgtctctgatcc |
29168367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 28 - 186
Target Start/End: Complemental strand, 29569866 - 29569708
Alignment:
| Q |
28 |
catcatcacactcacaacaactctgtcaaatgccgttcaccatcatcattatctgctcaccaaccatcatccaagaagcattcttttgacgcaagcaatc |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||| |
|
|
| T |
29569866 |
catcatcacactcacaacaactctgtcaaacgccgttcaccatcatcatcatctgctcaccaactatcatccaagaagcattcttccgacgcaagcaatc |
29569767 |
T |
|
| Q |
128 |
tcatgcgtaatggcttctctgccattacacttcctttcagtctccgtgggaatgctctt |
186 |
Q |
| |
|
||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
29569766 |
tcacccgtaatggcttctccgccattacacttcctttcagtctccgtggcaatgctctt |
29569708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 27 - 186
Target Start/End: Original strand, 27918583 - 27918742
Alignment:
| Q |
27 |
tcatcatcacactcacaacaactctgtcaaatgccgttcaccatcatcattatctgctcaccaaccatcatccaagaagcattcttttgacgcaagcaat |
126 |
Q |
| |
|
||||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||||||| |||||||||||||||||||| || |||||||||| |
|
|
| T |
27918583 |
tcatcatcacactcacaacaactctgtcaaacgcagttcaccatcatcatcttctgctcaccaactatcatccaagaagcattcttctggcgcaagcaat |
27918682 |
T |
|
| Q |
127 |
ctcatgcgtaatggcttctctgccattacacttcctttcagtctccgtgggaatgctctt |
186 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
27918683 |
ctcacccgtaatggcttctccgccattacacttcctttcagtctccgtggcaacgctctt |
27918742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 127; Significance: 9e-66; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 13 - 206
Target Start/End: Original strand, 25518400 - 25518596
Alignment:
| Q |
13 |
acatcatcaatgctt---catcatcacactcacaacaactctgtcaaatgccgttcaccatcatcattatctgctcaccaaccatcatccaagaagcatt |
109 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
25518400 |
acatcatcaatgcttggtcatcatcacactcacaacaactctgtcaaacgccgttcaccatcatcatcttctcctcaccaaccatcatccaagaagcatt |
25518499 |
T |
|
| Q |
110 |
cttttgacgcaagcaatctcatgcgtaatggcttctctgccattacacttcctttcagtctccgtgggaatgctcttagccactgtgtctctgatcc |
206 |
Q |
| |
|
|||| |||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||| ||||||||| || ||||||| ||||||| |
|
|
| T |
25518500 |
ctttcgacgcaagcaatctcacccgtaatggcttctccgccattacacttcctttcagtcttcgtggtaatgctcttcgctgctgtgtcgctgatcc |
25518596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University