View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4019_low_1 (Length: 773)

Name: NF4019_low_1
Description: NF4019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4019_low_1
NF4019_low_1
[»] chr5 (5 HSPs)
chr5 (263-532)||(19302305-19302574)
chr5 (1-222)||(12614289-12614510)
chr5 (609-705)||(19302132-19302228)
chr5 (723-756)||(19302081-19302114)
chr5 (195-224)||(12851042-12851071)
[»] chr3 (3 HSPs)
chr3 (191-222)||(36864830-36864861)
chr3 (195-229)||(3089659-3089693)
chr3 (192-222)||(40328069-40328099)
[»] chr8 (2 HSPs)
chr8 (192-222)||(3890412-3890442)
chr8 (192-222)||(37132478-37132508)
[»] chr6 (4 HSPs)
chr6 (192-222)||(29693683-29693713)
chr6 (192-222)||(34238885-34238915)
chr6 (195-228)||(18365366-18365399)
chr6 (195-228)||(18370630-18370663)
[»] chr4 (2 HSPs)
chr4 (192-222)||(11314049-11314079)
chr4 (192-222)||(25063372-25063402)
[»] chr2 (2 HSPs)
chr2 (192-222)||(22592950-22592980)
chr2 (195-228)||(35160999-35161032)
[»] chr1 (1 HSPs)
chr1 (198-227)||(33786672-33786701)


Alignment Details
Target: chr5 (Bit Score: 262; Significance: 1e-145; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 262; E-Value: 1e-145
Query Start/End: Original strand, 263 - 532
Target Start/End: Complemental strand, 19302574 - 19302305
Alignment:
Q  263 gtgtattaaaatgagaagaaggtaccaataaatagaattaaatcatatatcgttttcaacaataataagggaggttgcaagtgaatgagatagagctaaa 362  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  19302574 gtgtattaaaatgagaagaaggtaacaataaatagaattaaatcatatatcgttttcaaccataataagggaggttgcaagtgaatgagatagagctaaa 19302475  T
Q  363 cctcaaaaacaataacggttgtagattctgacctttcacttgtgtaagcttagaaaaacaaagacaatttaaggcttagtttggatgtttcagtttttgg 462  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19302474 cctcaaaaacaataacggttgtagattctgacctttcacttgtgtaagcttagaaaaacaaagacaatttaaggcttagtttggatgtttcagtttttgg 19302375  T
Q  463 tttgccaaatttggtactacccttaatcatagggatcttcaaaaacaaatatttaatcctagtcgtccaa 532  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19302374 tttgccaaatttggtactacccttaatcatagggatcttcaaaaacaaatatttaatcctagtcgtccaa 19302305  T

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Target: chr5; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 12614289 - 12614510
Alignment:
Q  1 tctctctatcgaaattaaaattaaaatagaaaatgttatgagaatgtaatctggccctaatattttacacataatattaagtctcttataaattttgtat 100  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |||||||||    
T  12614289 tctctctatcgaaattaaatttaaaatagaaaatgttatgagaatgtaatctggccctaatattttacgcataatattaagtctcttgtacattttgtat 12614388  T
Q  101 aaggcctcaaatttccttgacacggctctgtacctaccatttcctcaactagcatttgatgcgaattaacttcaaccatggacaatattatttgataaaa 200  Q
    ||||||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| || ||||||||||    
T  12614389 aaggcctcaaatttccttgacacagctctgtacctaccatttcatcaactaggatttgatgcgaattaacttcaaccatggacaattttctttgataaaa 12614488  T
Q  201 tcattcttgatatctagcattt 222  Q
    ||||||||||||||||||||||    
T  12614489 tcattcttgatatctagcattt 12614510  T

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Target: chr5; HSP #3
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 609 - 705
Target Start/End: Complemental strand, 19302228 - 19302132
Alignment:
Q  609 catgcatggaattctcctctaactacaacaccacaccaacaagagagagatcatagcctatccaataccaccattagcatcaacccttttcttcaaa 705  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19302228 catgcatggaattctcctctaactacaacaccacaccaacaagagagagatcatagcctatccaataccaccattagcatcaacccttttcttcaaa 19302132  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 723 - 756
Target Start/End: Complemental strand, 19302114 - 19302081
Alignment:
Q  723 ccattgctaacccattaaattcggttgctttgga 756  Q
    ||||||||||||||||||||||||||||||||||    
T  19302114 ccattgctaacccattaaattcggttgctttgga 19302081  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 224
Target Start/End: Original strand, 12851042 - 12851071
Alignment:
Q  195 ataaaatcattcttgatatctagcatttcc 224  Q
    ||||||||||||||||||||||||||||||    
T  12851042 ataaaatcattcttgatatctagcatttcc 12851071  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 222
Target Start/End: Complemental strand, 36864861 - 36864830
Alignment:
Q  191 tttgataaaatcattcttgatatctagcattt 222  Q
    ||||||||||||||||||||||||||||||||    
T  36864861 tttgataaaatcattcttgatatctagcattt 36864830  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 195 - 229
Target Start/End: Original strand, 3089659 - 3089693
Alignment:
Q  195 ataaaatcattcttgatatctagcatttcccaata 229  Q
    |||||||||||||||||||||||||||| ||||||    
T  3089659 ataaaatcattcttgatatctagcattttccaata 3089693  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 192 - 222
Target Start/End: Original strand, 40328069 - 40328099
Alignment:
Q  192 ttgataaaatcattcttgatatctagcattt 222  Q
    |||||||||||||||||||||||||||||||    
T  40328069 ttgataaaatcattcttgatatctagcattt 40328099  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 192 - 222
Target Start/End: Complemental strand, 3890442 - 3890412
Alignment:
Q  192 ttgataaaatcattcttgatatctagcattt 222  Q
    |||||||||||||||||||||||||||||||    
T  3890442 ttgataaaatcattcttgatatctagcattt 3890412  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 192 - 222
Target Start/End: Complemental strand, 37132508 - 37132478
Alignment:
Q  192 ttgataaaatcattcttgatatctagcattt 222  Q
    |||||||||||||||||||||||||||||||    
T  37132508 ttgataaaatcattcttgatatctagcattt 37132478  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000007; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 192 - 222
Target Start/End: Original strand, 29693683 - 29693713
Alignment:
Q  192 ttgataaaatcattcttgatatctagcattt 222  Q
    |||||||||||||||||||||||||||||||    
T  29693683 ttgataaaatcattcttgatatctagcattt 29693713  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 192 - 222
Target Start/End: Complemental strand, 34238915 - 34238885
Alignment:
Q  192 ttgataaaatcattcttgatatctagcattt 222  Q
    |||||||||||||||||||||||||||||||    
T  34238915 ttgataaaatcattcttgatatctagcattt 34238885  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 228
Target Start/End: Complemental strand, 18365399 - 18365366
Alignment:
Q  195 ataaaatcattcttgatatctagcatttcccaat 228  Q
    |||||||||||||||||||||||||||| |||||    
T  18365399 ataaaatcattcttgatatctagcattttccaat 18365366  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 228
Target Start/End: Complemental strand, 18370663 - 18370630
Alignment:
Q  195 ataaaatcattcttgatatctagcatttcccaat 228  Q
    |||||||||||||||||||||||||||| |||||    
T  18370663 ataaaatcattcttgatatctagcattttccaat 18370630  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 192 - 222
Target Start/End: Complemental strand, 11314079 - 11314049
Alignment:
Q  192 ttgataaaatcattcttgatatctagcattt 222  Q
    |||||||||||||||||||||||||||||||    
T  11314079 ttgataaaatcattcttgatatctagcattt 11314049  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 192 - 222
Target Start/End: Complemental strand, 25063402 - 25063372
Alignment:
Q  192 ttgataaaatcattcttgatatctagcattt 222  Q
    |||||||||||||||||||||||||||||||    
T  25063402 ttgataaaatcattcttgatatctagcattt 25063372  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 192 - 222
Target Start/End: Original strand, 22592950 - 22592980
Alignment:
Q  192 ttgataaaatcattcttgatatctagcattt 222  Q
    |||||||||||||||||||||||||||||||    
T  22592950 ttgataaaatcattcttgatatctagcattt 22592980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 228
Target Start/End: Original strand, 35160999 - 35161032
Alignment:
Q  195 ataaaatcattcttgatatctagcatttcccaat 228  Q
    |||||||||||||||||||||||||||| |||||    
T  35160999 ataaaatcattcttgatatctagcattttccaat 35161032  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 227
Target Start/End: Original strand, 33786672 - 33786701
Alignment:
Q  198 aaatcattcttgatatctagcatttcccaa 227  Q
    ||||||||||||||||||||||||||||||    
T  33786672 aaatcattcttgatatctagcatttcccaa 33786701  T

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