View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4019_low_5 (Length: 231)

Name: NF4019_low_5
Description: NF4019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4019_low_5
NF4019_low_5
[»] scaffold0111 (1 HSPs)
scaffold0111 (7-231)||(46707-46931)
[»] chr1 (3 HSPs)
chr1 (7-231)||(21493267-21493491)
chr1 (34-231)||(33066322-33066519)
chr1 (65-121)||(27186248-27186304)
[»] chr3 (3 HSPs)
chr3 (22-231)||(10288640-10288848)
chr3 (22-231)||(10304356-10304562)
chr3 (21-231)||(20950683-20950893)
[»] chr4 (2 HSPs)
chr4 (6-227)||(38501355-38501576)
chr4 (6-231)||(9283002-9283224)
[»] chr8 (2 HSPs)
chr8 (22-231)||(28975473-28975681)
chr8 (70-231)||(29041540-29041701)
[»] chr7 (1 HSPs)
chr7 (23-227)||(20380704-20380908)
[»] scaffold0041 (1 HSPs)
scaffold0041 (6-231)||(4883-5103)


Alignment Details
Target: scaffold0111 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 7 - 231
Target Start/End: Complemental strand, 46931 - 46707
Alignment:
Q  7 tcgaagaatatcgaggacaagcttagaaaacaatggaagactactgcagcttggtcattgctttctctaggtaggggcttctatgaattcttttttgcca 106  Q
    |||||| | ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  46931 tcgaaggaaatcaaggacaagcttagaaaacaatggaagactactgcagcttgatcattgctttctctaggtaggggcttctatgaattcttttttgcca 46832  T
Q  107 atgaatctgatatgcaaaatgtttgggcaatgagaactttaaacttgaagtcgggggttttacgactatttgaatggactacggattttgatatgcataa 206  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  46831 atgaatctgatatgcaaaatgtttgggcaatgggaactttaaacttgaagccgggggttttacgactatttgaatggactgcggattttgatatgcataa 46732  T
Q  207 ccagagaaacacacatgcgcaagta 231  Q
    |||||||||||||||||||||||||    
T  46731 ccagagaaacacacatgcgcaagta 46707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 177; Significance: 1e-95; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 7 - 231
Target Start/End: Complemental strand, 21493491 - 21493267
Alignment:
Q  7 tcgaagaatatcgaggacaagcttagaaaacaatggaagactactgcagcttggtcattgctttctctaggtaggggcttctatgaattcttttttgcca 106  Q
    |||||| | ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||||||    
T  21493491 tcgaaggaaatcgaggacaagcttagaaaacaatggaagactactgcaccttggtctttgctttctctaggtaggggcttctatgaattcgtttttgcca 21493392  T
Q  107 atgaatctgatatgcaaaatgtttgggcaatgagaactttaaacttgaagtcgggggttttacgactatttgaatggactacggattttgatatgcataa 206  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||  ||| ||||||||||||||    
T  21493391 atgaatctgatatgcaaaatgtttgggcaatgggaactttaaacttgaagccaggggttttacgactatttgaatggactgtggactttgatatgcataa 21493292  T
Q  207 ccagagaaacacacatgcgcaagta 231  Q
    ||||||||||||||||||| |||||    
T  21493291 ccagagaaacacacatgcgtaagta 21493267  T

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Target: chr1; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 34 - 231
Target Start/End: Complemental strand, 33066519 - 33066322
Alignment:
Q  34 aaacaatggaagactactgcagcttggtcattgctttctctaggtaggggcttctatgaattcttttttgccaatgaatctgatatgcaaaatgtttggg 133  Q
    |||||||||||||||| |||| ||||||| ||||| ||| ||||||||||||| ||||||||||||||||||| |||||||||| |||||| ||||||||    
T  33066519 aaacaatggaagactattgcaccttggtcgttgctatctttaggtaggggcttttatgaattcttttttgccactgaatctgatttgcaaattgtttggg 33066420  T
Q  134 caatgagaactttaaacttgaagtcgggggttttacgactatttgaatggactacggattttgatatgcataaccagagaaacacacatgcgcaagta 231  Q
    ||||| ||||  | ||||||||| ||||||| |||||  ||||||||||| |   |||||||||||||||||| || ||| | |||||| ||||||||    
T  33066419 caatgggaaccgtgaacttgaagccgggggtgttacgtttatttgaatggtcagtggattttgatatgcataatcatagagatacacatacgcaagta 33066322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 121
Target Start/End: Original strand, 27186248 - 27186304
Alignment:
Q  65 tgctttctctaggtaggggcttctatgaattcttttttgccaatgaatctgatatgc 121  Q
    |||| |||||||| ||||| |||||||||||||||||  | |||||| |||||||||    
T  27186248 tgctctctctaggaaggggattctatgaattctttttctctaatgaaactgatatgc 27186304  T

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Target: chr3 (Bit Score: 102; Significance: 8e-51; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 22 - 231
Target Start/End: Complemental strand, 10288848 - 10288640
Alignment:
Q  22 gacaagcttagaaaacaatggaagactactgcagcttggtcattgctttctctaggtaggggcttctatgaattcttttttgccaatgaatctgatatgc 121  Q
    ||||||||| ||||||||||||| |||| |||| ||||| | ||||| ||| ||||||||||||| ||||||||||||||||||| |||||||||| |||    
T  10288848 gacaagcttcgaaaacaatggaatacta-tgcaccttggacgttgctatctttaggtaggggcttttatgaattcttttttgccactgaatctgatttgc 10288750  T
Q  122 aaaatgtttgggcaatgagaactttaaacttgaagtcgggggttttacgactatttgaatggactacggattttgatatgcataaccagagaaacacaca 221  Q
    ||| ||||||||||||| ||||| | ||||||||| ||||| | |||||| ||||||||||| |   |||| ||||||||||||| |||||||| |||||    
T  10288749 aaattgtttgggcaatgggaactgtgaacttgaagccggggatgttacgattatttgaatggtcagtggatattgatatgcataatcagagaaatacaca 10288650  T
Q  222 tgcgcaagta 231  Q
    ||||||||||    
T  10288649 tgcgcaagta 10288640  T

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Target: chr3; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 22 - 231
Target Start/End: Complemental strand, 10304562 - 10304356
Alignment:
Q  22 gacaagcttagaaaacaatggaagactactgcagcttggtcattgctttctctaggtaggggcttctatgaattcttttttgccaatgaatctgatatgc 121  Q
    ||||||||| | ||||||||||||||| ||||| ||||| | ||||| ||| ||||||||||||| ||||||||||||||||||| |||||   || |||    
T  10304562 gacaagcttcggaaacaatggaagactgctgcaccttggacgttgctatctttaggtaggggcttttatgaattcttttttgccattgaat---atttgc 10304466  T
Q  122 aaaatgtttgggcaatgagaactttaaacttgaagtcgggggttttacgactatttgaatggactacggattttgatatgcataaccagagaaacacaca 221  Q
    ||| ||||||||||||| ||||| | ||||||||| || |||| |||||| ||||||||||| | |  ||||||||||||||||| |||||||| |||||    
T  10304465 aaattgtttgggcaatgggaactgtgaacttgaagccgagggtgttacgattatttgaatggtcaatagattttgatatgcataatcagagaaatacaca 10304366  T
Q  222 tgcgcaagta 231  Q
    ||||||||||    
T  10304365 tgcgcaagta 10304356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 21 - 231
Target Start/End: Original strand, 20950683 - 20950893
Alignment:
Q  21 ggacaagcttagaaaacaatggaagactactgcagcttggtcattgctttctctaggtaggggcttctatgaattcttttttgccaatgaatctgatatg 120  Q
    |||||||||||  ||||| ||||||||||||||  ||||| | || || |||||||| ||||| |  ||| ||||||||||||| |||||||||||||||    
T  20950683 ggacaagcttaagaaacagtggaagactactgctccttggacgttactatctctaggcaggggttattataaattcttttttgctaatgaatctgatatg 20950782  T
Q  121 caaaatgtttgggcaatgagaactttaaacttgaagtcgggggttttacgactatttgaatggactacggattttgatatgcataaccagagaaacacac 220  Q
    |||| |||||||||| || ||||  || | ||||| ||||||||||||||  |||||||| ||| |   |||||||||||| |||| ||||| ||||| |    
T  20950783 caaactgtttgggcagtgggaacgatagatttgaaatcgggggttttacgcttatttgaacggagtgtcgattttgatatgtataatcagaggaacaccc 20950882  T
Q  221 atgcgcaagta 231  Q
    ||| |||||||    
T  20950883 atgtgcaagta 20950893  T

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Target: chr4 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 6 - 227
Target Start/End: Complemental strand, 38501576 - 38501355
Alignment:
Q  6 gtcgaagaatatcgaggacaagcttagaaaacaatggaagactactgcagcttggtcattgctttctctaggtaggggcttctatgaattcttttttgcc 105  Q
    ||||||| | || |||||||||||||  ||||| ||||||||| ||||  ||||| | || || |||||||||||||| || || ||||||||||||||     
T  38501576 gtcgaaggaaattgaggacaagcttaagaaacagtggaagactgctgctccttggacgttactatctctaggtaggggtttttacgaattcttttttgct 38501477  T
Q  106 aatgaatctgatatgcaaaatgtttgggcaatgagaactttaaacttgaagtcgggggttttacgactatttgaatggactacggattttgatatgcata 205  Q
    ||||||||||||||||||| |||||||||| || ||||| |||| |||||  |||||||||||||  ||||||||||||||   |||||||||||| |||    
T  38501476 aatgaatctgatatgcaaactgtttgggcagtgggaactataaatttgaaaccgggggttttacgcttatttgaatggactgtcgattttgatatgtata 38501377  T
Q  206 accagagaaacacacatgcgca 227  Q
    | ||||| ||||| ||||||||    
T  38501376 atcagaggaacacccatgcgca 38501355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 6 - 231
Target Start/End: Original strand, 9283002 - 9283224
Alignment:
Q  6 gtcgaagaatatcgaggacaagcttagaaaacaatggaagactactgcagcttggtcattgctttctctaggtaggggcttctatgaattcttttttgcc 105  Q
    ||||||| | || |||||||||||| | ||||||||||||||| || || ||||| | ||||| ||| ||||||||||||| ||||| ||||||||||||    
T  9283002 gtcgaaggaaattgaggacaagcttcggaaacaatggaagactgctacaccttggacgttgctatctttaggtaggggcttttatgacttcttttttgcc 9283101  T
Q  106 aatgaatctgatatgcaaaatgtttgggcaatgagaactttaaacttgaagtcgggggttttacgactatttgaatggactacggattttgatatgcata 205  Q
    | | |   |||| |||||| ||||||||||||| ||||| | ||||||||| ||||||| |||||  ||||||||||| |   ||||||| |||||||||    
T  9283102 actaa---tgatttgcaaattgtttgggcaatgggaactgtgaacttgaagccgggggtgttacgtttatttgaatggtcggtggattttaatatgcata 9283198  T
Q  206 accagagaaacacacatgcgcaagta 231  Q
    | || || ||||| || || ||||||    
T  9283199 atcataggaacactcaagcacaagta 9283224  T

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Target: chr8 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 22 - 231
Target Start/End: Complemental strand, 28975681 - 28975473
Alignment:
Q  22 gacaagcttagaaaacaatggaagactactgcagcttggtcattgctttctctaggtaggggcttctatgaattcttttttgccaatgaatctgatatgc 121  Q
    ||||||||| | ||||||||||||||| ||||| |||||   ||||| ||| |||||| |||||| |||||||||||||||| || |||||||||| |||    
T  28975681 gacaagcttcggaaacaatggaagactgctgcaccttggaggttgctatctttaggtaagggcttttatgaattcttttttgtcactgaatctgatttgc 28975582  T
Q  122 aaaatgtttgggcaatgagaactttaaacttgaagtcgggggttttacgactatttgaatggactacggattttgatatgcataaccagagaaacacaca 221  Q
    ||| ||||||||||||| ||||| | ||||||||| ||| ||| |||||  ||||||||||| |   |||||||||||||||||| |||||||| ||| |    
T  28975581 aaattgtttgggcaatgggaactgtgaacttgaagccggcggtgttacgtttatttgaatggtcagtggattttgatatgcataatcagagaaataca-a 28975483  T
Q  222 tgcgcaagta 231  Q
    ||||||||||    
T  28975482 tgcgcaagta 28975473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 70 - 231
Target Start/End: Original strand, 29041540 - 29041701
Alignment:
Q  70 tctctaggtaggggcttctatgaattcttttttgccaatgaatctgatatgcaaaatgtttgggcaatgagaactttaaacttgaagtcgggggttttac 169  Q
    |||||||||||||| |  || |||||||||||||||||||||||||||||||||| |||||||||| || ||||  |||| |||||  ||||||||||||    
T  29041540 tctctaggtaggggttattaggaattcttttttgccaatgaatctgatatgcaaactgtttgggcagtgggaacgataaatttgaaaccgggggttttac 29041639  T
Q  170 gactatttgaatggactacggattttgatatgcataaccagagaaacacacatgcgcaagta 231  Q
    |  ||||||||||||||   |||||||||||| |||| || || ||||| |||| |||||||    
T  29041640 gcttatttgaatggactgtcgattttgatatgtataaacaaaggaacactcatgtgcaagta 29041701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 23 - 227
Target Start/End: Original strand, 20380704 - 20380908
Alignment:
Q  23 acaagcttagaaaacaatggaagactactgcagcttggtcattgctttctctaggtaggggcttctatgaattcttttttgccaatgaatctgatatgca 122  Q
    |||||||||  ||||||||||||||| ||||  ||||| | || || |||||||||||||| || || |||||||||||||| |||||||||||||||||    
T  20380704 acaagcttaagaaacaatggaagactgctgctccttggacgttactatctctaggtaggggtttttacgaattcttttttgctaatgaatctgatatgca 20380803  T
Q  123 aaatgtttgggcaatgagaactttaaacttgaagtcgggggttttacgactatttgaatggactacggattttgatatgcataaccagagaaacacacat 222  Q
    || | |||||||| || ||||  |||| |||||  |||||||||||||  ||||||||||||||   |||||||||||| |||| ||||| ||||| |||    
T  20380804 aactatttgggcagtgggaacgataaatttgaaaccgggggttttacgcttatttgaatggactgtcgattttgatatgtataatcagaggaacacccat 20380903  T
Q  223 gcgca 227  Q
    |||||    
T  20380904 gcgca 20380908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 6 - 231
Target Start/End: Complemental strand, 5103 - 4883
Alignment:
Q  6 gtcgaagaatatcgaggacaagcttagaaaacaatggaagactactgcagcttggtcattgctttctctaggtaggggcttctatgaattcttttttgcc 105  Q
    ||||||| | || |||||||||||||  ||||| |||||||||  |||  ||||| | || || |||||||||||||| |  || ||||||||||||||     
T  5103 gtcgaaggaaattgaggacaagcttaagaaacagtggaagactgttgctccttggacgttactatctctaggtaggggttattacgaattcttttttgct 5004  T
Q  106 aatgaatctgatatgcaaaatgtttgggcaatgagaactttaaacttgaagtcgggggttttacgactatttgaatggactacggattttgatatgcata 205  Q
    ||||||||| ||||||||| |||||||||| || ||||  |||| |||||  |||||||||||||  ||||||||||||||      ||||||||| |||    
T  5003 aatgaatcttatatgcaaattgtttgggcagtgggaacgataaatttgaaaccgggggttttacgcttatttgaatggact-----gtttgatatgtata 4909  T
Q  206 accagagaaacacacatgcgcaagta 231  Q
    | ||||| ||||| ||||| ||||||    
T  4908 atcagaggaacacccatgcacaagta 4883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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