View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4020_high_10 (Length: 387)
Name: NF4020_high_10
Description: NF4020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4020_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 12 - 370
Target Start/End: Original strand, 51715626 - 51715983
Alignment:
| Q |
12 |
atgaatgaaactgaaccctaacaaaatcagtaaactctaatcactactaattaaaaagaaggtgtgattcaggtaagcttgttgagaattttcgatgccc |
111 |
Q |
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| T |
51715626 |
atgaatgaaactgaaccctaacaaaatcagtaaactctaatcactactaattaaaaagaaggt-tgattcaggtaagcttgttgagaattttggatgccc |
51715724 |
T |
|
| Q |
112 |
aacgcttaacacgacctctgagtgtgtaaccaaaaataactccaccaacaaagcaaattgcacaaagcttggagcatgtccaataagacagaacttgtct |
211 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51715725 |
aacgcttaacacgacctctaagtgtgtaaccaaaaataactccaccaacaaagcaaattgcacaaagcttggagcatgtccaataagacagaacttgtct |
51715824 |
T |
|
| Q |
212 |
gcaagaataataaaaactatctcaattcaaatactaatgaattcacacaaacaatagtgatatcgaaattcccaacaaacaaattaatgcaaaaatcaac |
311 |
Q |
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||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
51715825 |
gcaagaataataaaatttatctcaattcaaatcctaatgaattcacacaaacaatagtgatatcgaaattcccaacaaacaaattaatggaaaaatcaac |
51715924 |
T |
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| Q |
312 |
atcagaaaagagacagagacatgcctggaaggtctggtagccaaaacatatgatgaatc |
370 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51715925 |
atcagaaaagagacagagacatgcctggaaggtctggtagccaaaacatatgatgaatc |
51715983 |
T |
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