View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4020_high_13 (Length: 375)
Name: NF4020_high_13
Description: NF4020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4020_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 12 - 359
Target Start/End: Complemental strand, 38483674 - 38483327
Alignment:
| Q |
12 |
atcatcataatttctccatctcgtatgtggttccgttccattaccactcctaatctcagcctcaaacttcaccattttataaatcggcttcacaacatcg |
111 |
Q |
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| T |
38483674 |
atcatcataatttctccatcttgtatgtggttccgttccattaccactcctaatctcagcctcaaacttcaccattttataaatcggcttcacaacatcg |
38483575 |
T |
|
| Q |
112 |
tttaaaaaaccatattgcgaatgaaagaacggttcataatcataatgatcattgtttttcttactccgcaagattttatttaaatcatttgccatatgat |
211 |
Q |
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| T |
38483574 |
tttaaaaaaccatattgcgaatgaaagaacggttcataatcataatgatcattgtttttcttactccgcaagattttatttaaatcatttgtcatatgat |
38483475 |
T |
|
| Q |
212 |
gaaaaatatagcaaatacattcaggaataaaacgtaaattcgcagactccccccaaatgagaagataaagagaaacatacagaatctcacgacgatgatc |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||| |
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| T |
38483474 |
gaaaaatatagcaaatacattcaggaataaaacgtaaattcgcagattccccccaaataaggagataaagagaaacatacagaatctcacgacgatgatc |
38483375 |
T |
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| Q |
312 |
agagttattatttttaagatcaggaagcgagacacttgacttaacatg |
359 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38483374 |
agagttattatttttaagatcaggaagcgagacacttgacttaacatg |
38483327 |
T |
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